From 28a7ed6e406c670d7783daaa6d37b12679a21476 Mon Sep 17 00:00:00 2001
From: redndgreen8 <37352469+redndgreen8@users.noreply.github.com>
Date: Mon, 14 Dec 2020 17:21:45 -0800
Subject: [PATCH] Update README.md

---
 README.md | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index 1e7150f..bcbf788 100644
--- a/README.md
+++ b/README.md
@@ -26,7 +26,7 @@ https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environme
 - gcc
 - tabix
 
-`conda create --name <proj_env> bedtools samtools snakemake boost gcc=7.3.0`
+`conda create --name <proj_env> bedtools samtools snakemake boost R gcc=7.3.0`
 
 conda install can be used to further add packages to <proj> environment with explicit version numbers.
  
@@ -49,7 +49,7 @@ viterbi.cpp needs boost to compile
 
 `g++ -W -I {boost_install}/boost/include/ viterbi.noclip.cpp -o viterbi`
 
-6. fai file has to be in the same dir as asm.fa / hg38.fa
+6. fai file has to be in the same dir as asm.fa / hg38.fa / reference.fa
 
 ## Running program