diff --git a/_data/publications.yml b/_data/publications.yml index 72882dd..561cb87 100644 --- a/_data/publications.yml +++ b/_data/publications.yml @@ -22,7 +22,7 @@ slug: flusion authors: Ray EL, Wang Y, Wolfinger RD, Reich NG preprint: https://arxiv.org/abs/2407.19054 - #pdf: https://arxiv.org/pdf/2407.19054 [update when published] + pdf: https://arxiv.org/pdf/2407.19054 year: 2024 journal: arXiv github: reichlab/flusion-manuscript @@ -76,7 +76,7 @@ slug: hubEnsembles authors: Shandross L, Howerton E, Contamin L, Hochheiser H, Krystalli A, Consortium of Infectious Disease Modeling Hubs, Reich NG, Ray EL preprint: https://www.medrxiv.org/content/10.1101/2024.06.24.24309416v1 - #pdf: https://www.medrxiv.org/content/10.1101/2024.06.24.24309416v1.full-text [update when published] + pdf: https://www.medrxiv.org/content/10.1101/2024.06.24.24309416v1.full.pdf year: 2024 journal: medRxiv github: hubverse-org/hubEnsemblesManuscript @@ -123,7 +123,7 @@ slug: alloscore authors: Gerding A, Reich NG, Rogers B, Ray EL preprint: https://arxiv.org/abs/2312.16201 - #pdf: https://arxiv.org/pdf/2312.16201.pdf [update when published] + pdf: https://arxiv.org/pdf/2312.16201 year: 2023 journal: arXiv github: aaronger/utility-eval-papers @@ -175,6 +175,7 @@ slug: gibson-mortality authors: Gibson GC, Reich NG, Sheldon D preprint: https://www.medrxiv.org/content/10.1101/2020.12.22.20248736v2 + pdf: https://pmc.ncbi.nlm.nih.gov/articles/PMC11229176/pdf/nihms-2005126.pdf year: 2023 volume: 17(3) pages: 1801-1819 @@ -203,7 +204,7 @@ slug: mix-distrib authors: Wadsworth S, Niemi J, Reich NG preprint: https://arxiv.org/abs/2310.11939 - #pdf: https://arxiv.org/pdf/2310.11939.pdf [update when published] + pdf: https://arxiv.org/pdf/2310.11939 year: 2023 journal: arXiv #doi: 10.48550/arXiv.2310.11939 [update when published] @@ -569,7 +570,7 @@ slug: reich-zoltar-forecast authors: Reich NG, Cornell M, Ray EL, House K, Le K preprint: https://arxiv.org/abs/2006.03922 - pdf: reich-zoltar-forecast + pdf: https://www.nature.com/articles/s41597-021-00839-5.pdf year: 2021 volume: 8(59) journal: Scientific Data @@ -743,7 +744,7 @@ slug: bi-dengue-patterns authors: Bi Q, Cummings DAT, Reich NG, Keegan LT, Kaminsky J, Salje H, Clapham H, Doung-ngern P, Iamsirithaworn S, Lessler J preprint: https://www.medrxiv.org/content/10.1101/2020.11.25.20186056v1 - #pdf: https://www.medrxiv.org/content/10.1101/2020.11.25.20186056v1.full.pdf [update when published] + pdf: https://www.medrxiv.org/content/10.1101/2020.11.25.20186056v1.full.pdf year: 2020 journal: medRxiv #doi: 10.1101/2020.11.25.20186056 [update when published] @@ -771,7 +772,7 @@ slug: ray-ensemble-covid19 authors: Ray EL, Wattanachit N, Niemi J, Kanji AH, House K, Cramer EY, ... Reich NG on behalf of the COVID-19 Forecast Hub Consortium preprint: https://www.medrxiv.org/content/10.1101/2020.08.19.20177493v1 - #pdf: https://www.medrxiv.org/content/10.1101/2020.08.19.20177493v1.full.pdf [update when published] + pdf: https://www.medrxiv.org/content/10.1101/2020.08.19.20177493v1.full.pdf year: 2020 journal: medRxiv github: reichlab/covidEnsembles @@ -843,7 +844,7 @@ slug: lauer-public-health authors: Lauer SA, Brown AC, Reich NG preprint: https://arxiv.org/abs/2006.00073 - #pdf: https://arxiv.org/pdf/2006.00073.pdf [update when published] + pdf: https://arxiv.org/pdf/2006.00073 year: 2020 journal: arXiv #doi: 10.48550/arXiv.2006.00073 [update when published] @@ -1069,7 +1070,7 @@ slug: covariate-adjusted authors: Lauer SA, Reich NG, Balzer LB preprint: https://arxiv.org/abs/1910.11397 - #pdf: https://arxiv.org/pdf/1910.11397.pdf [update when published] + pdf: https://arxiv.org/pdf/1910.11397 year: 2019 journal: arXiv #doi: 10.48550/arXiv.1910.11397 [update when published] @@ -1321,6 +1322,7 @@ slug: reich-active-monitoring authors: Reich NG, Lessler J, Varma JK, Vora NM preprint: https://www.biorxiv.org/content/early/2017/06/28/156497 + pdf: https://www.nature.com/articles/s41598-018-19406-x.pdf year: 2018 volume: 8 pages: 1093 @@ -1347,6 +1349,7 @@ - title: 'Protecting Healthcare Personnel in Outpatient Settings: The Influence of Mandatory Versus Nonmandatory Influenza Vaccination Policies on Workplace Absenteeism During Multiple Respiratory Virus Seasons' slug: frederick-absenteeism authors: Frederick J, Brown AC, Cummings DAT, Gaydos CA, Gibert CL, Gorse GJ, Los JG, Nyquist AC, Perl TM, Price CS, Radonovich LJ, Reich NG, Rodriguez-Barradas MC, Bessesen MT, Simberkoff MS, for the ResPECT Teama + pdf: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10241003/pdf/nihms-1880614.pdf year: 2018 volume: 39 journal: Infect Control Hosp Epidemiol @@ -1366,6 +1369,7 @@ - title: 'Infectious Disease Prediction with Kernel Conditional Density Estimation' slug: ray-kcde authors: Ray EL, Sakrejda K, Lauer SA, Johansson MA, Reich NG + pdf: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5771499/pdf/nihms903505.pdf year: 2017 volume: 36 pages: 4908-4929 @@ -1397,6 +1401,7 @@ - title: 'flusight: interactive visualizations for infectious disease forecasts' authors: Tushar A, Reich NG slug: tushar-flusight + pdf: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5565220/pdf/nihms888278.pdf year: 2017 volume: 2 journal: JOSS @@ -1425,6 +1430,7 @@ slug: wang-confidence authors: Wang X, Reich NG, Horton NJ preprint: https://arxiv.org/abs/1701.08452 + pdf: https://www.tandfonline.com/doi/epdf/10.1080/00031305.2017.1305294?needAccess=true year: 2017 journal: The American Statistician doi: 10.1080/00031305.2017.1305294 @@ -1447,6 +1453,7 @@ - title: 'Challenges in Real-Time Prediction of Infectious Disease: A Case Study of Dengue in Thailand' slug: reich-realtime-dengue-prediction preprint: https://arxiv.org/abs/1511.04812 + pdf: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909288/pdf/pntd.0004761.pdf volume: 10 pages: e0004761 authors: > @@ -1479,6 +1486,7 @@ - title: 'Evaluating the performance of infectious disease forecasts: A comparison of climate-driven and seasonal dengue forecasts for Mexico' authors: Johansson MA, Reich NG, Hota A, Brownstein JS, Santillana M + pdf: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5036038/pdf/srep33707.pdf year: 2016 slug: johansson-dengue-mexico volume: 6 @@ -1492,6 +1500,7 @@ slug: reich-mae-case-study authors: > Reich NG, Lessler J, Sakrejda K, Lauer SA, Iamsirithaworn S, Cummings DAT + pdf: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5270768/pdf/nihms-810008.pdf year: 2016 volume: 70 pages: 285-292 @@ -1522,6 +1531,7 @@ slug: lessler-zika-key-events year: 2016 preprint: https://www.biorxiv.org/content/early/2016/03/02/041913 + pdf: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5096355/pdf/BLT.16.174540.pdf volume: 94 journal: Bulletin of the World Health Organization github: HopkinsIDD/ZikaLitReview @@ -1531,8 +1541,9 @@ OBJECTIVE: To estimate the timing of key events in the natural history of Zika virus infection. METHODS: In February 2016, we searched PubMed, Scopus and the Web of Science for publications containing the term Zika. By pooling data, we estimated the incubation period, the time to seroconversion and the duration of viral shedding. We estimated the risk of Zika virus contaminated blood donations. FINDINGS: We identified 20 articles on 25 patients with Zika virus infection. The median incubation period for the infection was estimated to be 5.9 days (95% credible interval, CrI: 4.4-7.6), with 95% of people who developed symptoms doing so within 11.2 days (95% CrI: 7.6-18.0) after infection. On average, seroconversion occurred 9.1 days (95% CrI: 7.0-11.6) after infection. The virus was detectable in blood for 9.9 days (95% CrI: 6.9-21.4) on average. Without screening, the estimated risk that a blood donation would come from an infected individual increased by approximately 1 in 10 000 for every 1 per 100 000 person-days increase in the incidence of Zika virus infection. Symptom-based screening may reduce this rate by 7% (relative risk, RR: 0.93; 95% CrI: 0.89-0.99) and antibody screening, by 29% (RR: 0.71; 95% CrI: 0.28-0.88). CONCLUSION: Neither symptom- nor antibody-based screening for Zika virus infection substantially reduced the risk that blood donations would be contaminated by the virus. Polymerase chain reaction testing should be considered for identifying blood safe for use in pregnant women in high-incidence areas. - title: 'The Respiratory Protection Effectiveness Clinical Trial (ResPECT): A Cluster-Randomized Comparison of Respirator and Medical Mask Effectiveness against Respiratory Infections in Healthcare Personnel' - authors: Radonovich LJ, Bessesen M, Cummings DAT, Eagan A, Gaydos C, Gibert C, Gorse G, Nyquist C, Reich NG, Rodriguez-Barradas M, Savor-Price C, Shaffer R, Simberkoff M, Perl TM slug: radonovich-protocol + authors: Radonovich LJ, Bessesen M, Cummings DAT, Eagan A, Gaydos C, Gibert C, Gorse G, Nyquist C, Reich NG, Rodriguez-Barradas M, Savor-Price C, Shaffer R, Simberkoff M, Perl TM + pdf: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4890247/pdf/12879_2016_Article_1494.pdf year: 2016 volume: 16 pages: 243 @@ -1581,6 +1592,7 @@ - title: 'The Effect of Cluster Size Variability on Statistical Power in Cluster-Randomized Trials' slug: lauer-cluster-power authors: Lauer SA, Kleinman K, Reich NG + pdf: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4382318/pdf/pone.0119074.pdf year: 2015 volume: 10 pages: e0119074 @@ -1597,6 +1609,7 @@ authors: > Reich NG, Shrestha S, King AA, Rohani P, Lessler J, Kalayanarooj S, Yoon IK, Gibbons RV, Burke DS, Cummings DAT. + pdf: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3730691/pdf/rsif20130414.pdf year: 2013 volume: 10 pages: 20130414 @@ -1627,6 +1640,7 @@ - title: 'Empirical power and sample size calculations for cluster-randomized and cluster-randomized crossover studies' slug: reich-cluster-power authors: Reich NG, Myers JA, Obeng D, Milstone AM, Perl TM + pdf: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338707/pdf/pone.0035564.pdf year: 2012 volume: 7 number: 4