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Added File Size to Examples
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saenopy/examples.py

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -68,7 +68,7 @@ def get_examples():
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image_path = Path(resource_path("thumbnails"))
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return {
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"ClassicSingleCellTFM": {
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"desc": "Hepatic stellate cells in 1.2mg/ml collagen with relaxed and deformed stacks.\nRelaxed state induced with cytochalasin D.\n3 examples",
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"desc": "Hepatic stellate cells in 1.2mg/ml collagen with relaxed and deformed stacks.\nRelaxed state induced with cytochalasin D.\n3 examples (~800MB)",
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"img": image_path / "liver_fibroblast_icon.png",
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"voxel_size": [0.7211, 0.7211, 0.988],
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"stack": example_path / '1_ClassicSingleCellTFM/Deformed/Mark_and_Find_001/Pos*_S001_z{z}_ch{c:00}.tif',
@@ -83,7 +83,7 @@ def get_examples():
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"url_evaluated_file": ["Pos004_S001_z{z}_ch{c00}.saenopy", "Pos007_S001_z{z}_ch{c00}.saenopy", "Pos008_S001_z{z}_ch{c00}.saenopy"],
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},
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"DynamicalSingleCellTFM": {
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"desc": "Single natural killer cell that migrated through 1.2mg/ml collagen, recorded for 24min.\n1 example",
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"desc": "Single natural killer cell that migrated through 1.2mg/ml collagen, recorded for 24min.\n1 example (~1.3GB)",
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"img": image_path / "Dynamic_icon.png",
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"voxel_size": [0.2407, 0.2407, 1.0071],
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"time_delta": 60,
@@ -99,7 +99,7 @@ def get_examples():
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"url_evaluated_file": ["Pos002_S001_t{t}_z{z}_ch{c00}.saenopy"],
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},
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"OrganoidTFM": {
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"desc": "Intestinal organoid in 1.2mg/ml collagen",
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"desc": "Intestinal organoid in 1.2mg/ml collagen (~20MB)",
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"img": image_path / "StainedOrganoid_icon.png",
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"voxel_size": [1.444, 1.444, 1.976],
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"stack": example_path / '4_OrganoidTFM/Pos007_S001_t50_z{z}_ch00.tif',
@@ -114,7 +114,7 @@ def get_examples():
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"url_evaluated_file": ["Pos007_S001_t50_z{z}_ch00.saenopy"],
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},
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"BrightfieldTFM": {
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"desc": "Traction forces around an immune cell in collagen 1.2mg/ml calculated on simple brightfield images",
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"desc": "Traction forces around an immune cell in collagen 1.2mg/ml calculated on simple brightfield images (~1GB)",
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"img": image_path / "BFTFM_2.png",
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"voxel_size": [0.15, 0.15, 2.0],
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"crop": {'x': (1590, 2390), 'y': (878, 1678), 'z': (30, 90)},

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