diff --git a/saenopy/examples.py b/saenopy/examples.py index e5fc3720..28c4942c 100644 --- a/saenopy/examples.py +++ b/saenopy/examples.py @@ -168,6 +168,18 @@ def get_examples_spheroid(): "url_evaluated": "https://github.com/rgerum/saenopy/releases/download/v0.7.4/Jointforces_MCF7-time-lapse_evaluated.zip", "url_evaluated_file": ["20160912-122130_Mic3_rep{t}_pos6_x0_y0_modeBF_zMinProj.saenopySpheroid"], }, + "Human fibroblast spheroids": { + "desc": "Human liver fibroblast spheroids (4000 cells) treated with and without inhibition of contractile forces using Rho-kinase inhibitor (added at 0h) for 12h in 1.2mg/ml collagen (~1GB)", + "img": image_path / "SpheroidBlue.png", + "pixel_size": 1.02385, + "time_delta": 900, + "input": example_path / 'Jointforces_FibroblastSpheroids_RockInhibition/*/*Mic5_rep?_pos*_in-focus_modeBF_slice0_z0.tif', + "output_path": example_path / 'Jointforces_FibroblastSpheroids_RockInhibition/example_output', + "url": "https://github.com/rgerum/saenopy/releases/download/v0.7.4/Jointforces_FibroblastSpheroids_RockInhibition.zip", + "url_evaluated": "https://github.com/rgerum/saenopy/releases/download/v0.7.4/Jointforces_FibroblastSpheroids_RockInhibition_evaluated.zip", + "url_evaluated_file": ["Control/20201021-180200_Mic5_rep{t}_pos09_in-focus_modeBF_slice0_z0.saenopySpheroid", + "RockInhibitor10um/20201021-180200_Mic5_rep{t}_pos29_in-focus_modeBF_slice0_z0.saenopySpheroid"], + }, "Mouse organoids": { "desc": "Mouse intestinal organoid responding to mechanosensitive agonist (added after 48h) for 3 days in 1.2mg/ml collagen (~1GB)", "img": image_path / "StainedOrganoid_icon.png", diff --git a/saenopy/img/thumbnails/SpheroidBlue.png b/saenopy/img/thumbnails/SpheroidBlue.png new file mode 100644 index 00000000..46a5c516 Binary files /dev/null and b/saenopy/img/thumbnails/SpheroidBlue.png differ