From 063dc7486822d7e240d9f2efc54e570052d1aad7 Mon Sep 17 00:00:00 2001 From: "Lataretu, Marie" Date: Wed, 13 Mar 2024 10:15:31 +0100 Subject: [PATCH] updated nextclade output --- tests/test.yml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/tests/test.yml b/tests/test.yml index 669010c..de502d8 100644 --- a/tests/test.yml +++ b/tests/test.yml @@ -100,14 +100,14 @@ - path: "results/05-Linages_Mutations/SAMPLE1_PE/SAMPLE1_PE.aligned.fasta" md5sum: 59ee3f944dcda28f16c20f00a819aa0e - path: "results/05-Linages_Mutations/SAMPLE1_PE/SAMPLE1_PE_clade.tsv" - md5sum: 6cdd6ae28611b295d06594993f8ab3bc + md5sum: 92f74146db907b4c8086ccbb550953c8 - path: "results/05-Linages_Mutations/SAMPLE1_PE/SAMPLE1_PE_lineage_report.csv" contains: - "taxon,lineage,conflict,ambiguity_score,scorpio_call,scorpio_support,scorpio_conflict,scorpio_notes,version,pangolin_version,scorpio_version,constellation_version,is_designated,qc_status,qc_notes,note" - path: "results/05-Linages_Mutations/SAMPLE2_PE/SAMPLE2_PE.aligned.fasta" md5sum: e1936924ec8fe26dbc87a2277e4a3dac - path: "results/05-Linages_Mutations/SAMPLE2_PE/SAMPLE2_PE_clade.tsv" - md5sum: ac2e403922170a07a41a48947b768a12 + md5sum: aa9ff26b8308444690ce986dfe7bed59 - path: "results/05-Linages_Mutations/SAMPLE2_PE/SAMPLE2_PE_lineage_report.csv" contains: - "taxon,lineage,conflict,ambiguity_score,scorpio_call,scorpio_support,scorpio_conflict,scorpio_notes,version,pangolin_version,scorpio_version,constellation_version,is_designated,qc_status,qc_notes,note" @@ -127,7 +127,7 @@ md5sum: b649f9400fe6842b2f8a2537e137f66a - path: "results/Report/report_datatable.xlsx" - path: "results/Report/single_tables/nextclade_results.tsv" - md5sum: 58b42101676f5fab5d82c94b8dd91671 + md5sum: 7823b5b56e31a5412263384f10d7f204 - path: "results/Report/single_tables/pangolin_results.csv" md5sum: fcf7e3bc0b3c852a08a8ba801c406920 - path: "results/Report/single_tables/president_results.tsv" @@ -236,14 +236,14 @@ - path: "results/05-Linages_Mutations/SAMPLE1_PE/SAMPLE1_PE.aligned.fasta" md5sum: 59ee3f944dcda28f16c20f00a819aa0e - path: "results/05-Linages_Mutations/SAMPLE1_PE/SAMPLE1_PE_clade.tsv" - md5sum: a4ac4a5a69067232f1d9919a45f9ecab + md5sum: 92f74146db907b4c8086ccbb550953c8 - path: "results/05-Linages_Mutations/SAMPLE1_PE/SAMPLE1_PE_lineage_report.csv" contains: - "taxon,lineage,conflict,ambiguity_score,scorpio_call,scorpio_support,scorpio_conflict,scorpio_notes,version,pangolin_version,scorpio_version,constellation_version,is_designated,qc_status,qc_notes,note" - path: "results/05-Linages_Mutations/SAMPLE2_PE/SAMPLE2_PE.aligned.fasta" md5sum: e1936924ec8fe26dbc87a2277e4a3dac - path: "results/05-Linages_Mutations/SAMPLE2_PE/SAMPLE2_PE_clade.tsv" - md5sum: a8bd3d4e09ae750f07ae6cd5d8a83def + md5sum: aa9ff26b8308444690ce986dfe7bed59 - path: "results/05-Linages_Mutations/SAMPLE2_PE/SAMPLE2_PE_lineage_report.csv" contains: - "taxon,lineage,conflict,ambiguity_score,scorpio_call,scorpio_support,scorpio_conflict,scorpio_notes,version,pangolin_version,scorpio_version,constellation_version,is_designated,qc_status,qc_notes,note" @@ -263,7 +263,7 @@ md5sum: b649f9400fe6842b2f8a2537e137f66a - path: "results/Report/report_datatable.xlsx" - path: "results/Report/single_tables/nextclade_results.tsv" - md5sum: dc7a07bc062837349d151c8946ae29c2 + md5sum: 7823b5b56e31a5412263384f10d7f204 - path: "results/Report/single_tables/pangolin_results.csv" - path: "results/Report/single_tables/president_results.tsv" - path: "results/Report/single_tables/sc2rf_results.csv"