From 5eb3ad288e6d1263b7f4f3838831aeb07203c066 Mon Sep 17 00:00:00 2001
From: rmgpanw <rmgpanw@ucl.ac.uk>
Date: Fri, 19 Apr 2024 06:53:57 +0100
Subject: [PATCH] update shiny-apps-deploy.yaml - instll devtools system
 requirements

---
 .github/workflows/shinyapps-deploy.yaml | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/shinyapps-deploy.yaml b/.github/workflows/shinyapps-deploy.yaml
index 1e8bf55..1bee888 100644
--- a/.github/workflows/shinyapps-deploy.yaml
+++ b/.github/workflows/shinyapps-deploy.yaml
@@ -26,7 +26,12 @@ jobs:
           rm -r renv
           rm .Rprofile
       - name: install gtexr
-        run: devtools::install_github("rmgpanw/gtexr@dev_shiny")
+        run: |
+          Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04", package = "devtools"))' | \
+            while read -r cmd; do \
+            echo $cmd && eval sudo $cmd; \
+            done
+          devtools::install_github("rmgpanw/gtexr@dev_shiny")
         shell: Rscript {0}
       - name: deploy
         uses: BDSI-Utwente/shinyapps-deploy-github-action@v1