Run targets pipeline

Author: actions-user

README.md

@@ -3,29 +3,30 @@
 
 # Overview
 
-Project to facilitate phenotype extraction from the UK Biobank dataset.
-Please see [project
-website](https://rmgpanw.gitlab.io/ukb_extract_phenotypes) for further
-details.
+A data science project built with
+[workflowr](https://workflowr.github.io/workflowr/index.html) and
+[targets](https://books.ropensci.org/targets/).
 
 # Setup
 
--   Create an R script called `_targets_config.R` in the project root
+  - Create an R script called `_targets_config.R` in the project root
     directory with the following objects and populate:
 
-<!-- -->
+<!-- end list -->
 
     # Config file for targets pipeline (not tracked by git). Defines global
     # objects that may differ between local instances of a project.
-
+    
     # File paths ---------------------------------------------------------------
-
+    
     # input files
-
+    
     ## My file - typically may be located outside this project, but can be local
     ## also
-    MY_FILE <-
+    MY_FILE_IN_PATH <-
 
--   Install required R packages with `renv::restore()`
--   Run [targets pipeline](https://books.ropensci.org/targets/) with
+  - Install required R packages, ideally using
+    [renv](https://rstudio.github.io/renv/) with `renv::init()`, or
+    `renv::restore()` if a `renv.lock` file is already present.
+  - Run [targets pipeline](https://books.ropensci.org/targets/) with
     `tar_make()` in the R console, or using the ‘Build’ tab in RStudio.