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confTest.rmto
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confTest.rmto
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MUnumber_SOL-S,100,
MUnumber_SOL-FR,0,
MUnumber_SOL-FF,0,
Number_RC_ext,0,
Number_CMExt,400,
Number_Ia-SOL,400,
Number_Ia-LG,160,
Number_Ia-TA,280,
NumberAxonNodes,0,
timeStep,0.05,
simDuration,500,
nerveLength_PTN,0.8,
nerveLength_CPN,0.8,
MNSomaRefPer,5.0,
RCSomaRefPer,1.0,
AFRefPer,5.0,
skinThickness,1.5,
MUSpatialDistribution,random,
MUParameterDistribution,linear,
EMGAttenuationFactor,5,
EMGWideningFactor,0.1,
EMGNoiseEMG,0.7,
% Model options
activationModel,SOCDS,
hillModel,No,
EMGModel,HR,
StateType,pulse,
% Inputs
GammaOrder_CMExt,10,
DriveTarget_CMExt,ISI,
DriveFunction_CMExt,12+0*t,
%Stimulus
stimDistToTerm_PTN,0.2,
stimStart_PTN,0,
stimStop_PTN,3000,
stimIntensity_PTN,10,
stimFrequency_PTN,10,
stimPulseDuration_PTN,1,
stimModulation_PTN,5+0*t,
stimModulationStart_PTN,200,
stimModulationStop_PTN,400,
% Synapses
%% SOL
EqPotSyn:SOL-S|excitatory,70.0,
EqPotSyn:SOL-FR|excitatory,70.0,
EqPotSyn:SOL-FF|excitatory,70.0,
EqPotSyn:SOL-S|inhibitory,-16.0,
EqPotSyn:SOL-FR|inhibitory,-16.0,
EqPotSyn:SOL-FF|inhibitory,-16.0,
alphaSyn:SOL-S|excitatory,0.5,
alphaSyn:SOL-FR|excitatory,0.5,
alphaSyn:SOL-FF|excitatory,0.5,
betaSyn:SOL-S|excitatory,2.5,
betaSyn:SOL-FR|excitatory,2.5,
betaSyn:SOL-FF|excitatory,2.5,
alphaSyn:SOL-S|inhibitory,0.5,
alphaSyn:SOL-FR|inhibitory,0.5,
alphaSyn:SOL-FF|inhibitory,0.5,
betaSyn:SOL-S|inhibitory,1.2,
betaSyn:SOL-FR|inhibitory,1.2,
betaSyn:SOL-FF|inhibitory,1.2,
TmaxSyn:SOL-S|excitatory,1.0,
TmaxSyn:SOL-FR|excitatory,1.0,
TmaxSyn:SOL-FF|excitatory,1.0,
TmaxSyn:SOL-S|inhibitory,1.0,
TmaxSyn:SOL-FR|inhibitory,1.0,
TmaxSyn:SOL-FF|inhibitory,1.0,
tPeakSyn:SOL-S|excitatory,0.2,
tPeakSyn:SOL-FR|excitatory,0.2,
tPeakSyn:SOL-FF|excitatory,0.2,
tPeakSyn:SOL-S|inhibitory,0.4,
tPeakSyn:SOL-FR|inhibitory,0.4,
tPeakSyn:SOL-FF|inhibitory,0.4,
Con:CMExt->SOL-S@dendrite|excitatory,30,
Con:CMExt->SOL-FR@dendrite|excitatory,30,
Con:CMExt->SOL-FF@dendrite|excitatory,30,
gmax:CMExt->SOL-S@dendrite|excitatory,0.6,
gmax:CMExt->SOL-FR@dendrite|excitatory,0.6,
gmax:CMExt->SOL-FF@dendrite|excitatory,0.6,
delay:CMExt->SOL-S@dendrite|excitatory,0.3,
delay:CMExt->SOL-FR@dendrite|excitatory,0.3,
delay:CMExt->SOL-FF@dendrite|excitatory,0.3,
dyn:CMExt->SOL-S@dendrite|excitatory,None,
dyn:CMExt->SOL-FR@dendrite|excitatory,None,
dyn:CMExt->SOL-FF@dendrite|excitatory,None,
dec:CMExt->SOL-S@dendrite|excitatory,inf,
dec:CMExt->SOL-FR@dendrite|excitatory,inf,
dec:CMExt->SOL-FF@dendrite|excitatory,inf,
Con:RC_ext->SOL-S@soma|inhibitory,4,
Con:RC_ext->SOL-FR@soma|inhibitory,4,
Con:RC_ext->SOL-FF@soma|inhibitory,4,
gmax:RC_ext->SOL-S@soma|inhibitory,0.44,
gmax:RC_ext->SOL-FR@soma|inhibitory,0.44,
gmax:RC_ext->SOL-FF@soma|inhibitory,0.44,
delay:RC_ext->SOL-S@soma|inhibitory,0.3,
delay:RC_ext->SOL-FR@soma|inhibitory,0.3,
delay:RC_ext->SOL-FF@soma|inhibitory,0.3,
dyn:RC_ext->SOL-S@soma|inhibitory,None,
dyn:RC_ext->SOL-FR@soma|inhibitory,None,
dyn:RC_ext->SOL-FF@soma|inhibitory,None,
dec:RC_ext->SOL-S@soma|inhibitory,0.22,
dec:RC_ext->SOL-FR@soma|inhibitory,0.22,
dec:RC_ext->SOL-FF@soma|inhibitory,0.22,
Con:Ia-SOL>SOL-S@dendrite|excitatory,90,
Con:Ia-SOL>SOL-FR@dendrite|excitatory,90,
Con:Ia-SOL>SOL-FF@dendrite|excitatory,90,
gmax:Ia-SOL>SOL-S@dendrite|excitatory,0.6,
gmax:Ia-SOL>SOL-FR@dendrite|excitatory,0.6,
gmax:Ia-SOL>SOL-FF@dendrite|excitatory,0.6,
delay:Ia-SOL>SOL-S@dendrite|excitatory,0.3,
delay:Ia-SOL>SOL-FR@dendrite|excitatory,0.3,
delay:Ia-SOL>SOL-FF@dendrite|excitatory,0.3,
dyn:Ia-SOL>SOL-S@dendrite|excitatory,None,
dyn:Ia-SOL>SOL-FR@dendrite|excitatory,None,
dyn:Ia-SOL>SOL-FF@dendrite|excitatory,None,
dec:Ia-SOL>SOL-S@dendrite|excitatory,inf,
dec:Ia-SOL>SOL-FR@dendrite|excitatory,inf,
dec:Ia-SOL>SOL-FF@dendrite|excitatory,inf,
Con:Ia-LG>SOL-S@dendrite|excitatory,15,
Con:Ia-LG>SOL-FR@dendrite|excitatory,15,
Con:Ia-LG>SOL-FF@dendrite|excitatory,15,
gmax:Ia-LG>SOL-S@dendrite|excitatory,0.6,
gmax:Ia-LG>SOL-FR@dendrite|excitatory,0.6,
gmax:Ia-LG>SOL-FF@dendrite|excitatory,0.6,
delay:Ia-LG>SOL-S@dendrite|excitatory,0.3,
delay:Ia-LG>SOL-FR@dendrite|excitatory,0.3,
delay:Ia-LG>SOL-FF@dendrite|excitatory,0.3,
dyn:Ia-LG>SOL-S@dendrite|excitatory,None,
dyn:Ia-LG>SOL-FR@dendrite|excitatory,None,
dyn:Ia-LG>SOL-FF@dendrite|excitatory,None,
dec:Ia-LG>SOL-S@dendrite|excitatory,inf,
dec:Ia-LG>SOL-FR@dendrite|excitatory,inf,
dec:Ia-LG>SOL-FF@dendrite|excitatory,inf,
%% RC
EqPotSyn:RC_ext-|excitatory,70.0,
EqPotSyn:RC_ext-|inhibitory,-16.0,
alphaSyn:RC_ext-|excitatory,0.5,
betaSyn:RC_ext-|excitatory,0.07,
alphaSyn:RC_ext-|inhibitory,0.5,
betaSyn:RC_ext-|inhibitory,1.2,
TmaxSyn:RC_ext-|excitatory,1.0,
TmaxSyn:RC_ext-|inhibitory,1.0,
tPeakSyn:RC_ext-|excitatory,3,
tPeakSyn:RC_ext-|inhibitory,0.4,
Con:SOL-S>RC_ext-@soma|excitatory,6,
gmax:SOL-S>RC_ext-@soma|excitatory,0.15,
delay:SOL-S>RC_ext-@soma|excitatory,0.3,
dyn:SOL-S>RC_ext-@soma|excitatory,Depressing,
dec:SOL-S>RC_ext-@soma|excitatory,0.01,
var:SOL-S>RC_ext-@soma|excitatory,0.5,
tau:SOL-S>RC_ext-@soma|excitatory,200,
Con:Noise>RC_ext-@soma|excitatory,100,
gmax:Noise>RC_ext-@soma|excitatory,0.015,
delay:Noise>RC_ext-@soma|excitatory,0.3,
dyn:Noise>RC_ext-@soma|excitatory,None,
dec:Noise>RC_ext-@soma|excitatory,inf,
NoiseGammaOrder_RC_ext,10,
NoiseTarget_RC_ext,FR,
NoiseFunction_RC_ext,7 + 0*t,
% Channel conductance
%% Equilibrium Potential
EqPot_Kf@soma,-10,
EqPot_Ks@soma,-10,
EqPot_Na@soma,120,
EqPot_Na@node,116,
EqPot_Nap@node,116,
EqPot_KsAxon@node,-25,
EqPot_Kf@node,-25,
EqPot_KsAxon@internode,-25,
EqPot_Kf@internode,-25,
EqPot_H@internode,15,
%% Conductance density
%%% SOL
gmax_Na:SOL-S@soma,30000,
gmax_Kf:SOL-S@soma,4000,
gmax_Ks:SOL-S@soma,17000,
gmax_Na:SOL-FR@soma,30000,
gmax_Kf:SOL-FR@soma,4000,
gmax_Ks:SOL-FR@soma,37500,
gmax_Na:SOL-FF@soma,30000,
gmax_Kf:SOL-FF@soma,500,
gmax_Ks:SOL-FF@soma,8000,
gmax_Na:SOL-S@node,552000,
gmax_Nap:SOL-S@node,590,
gmax_Kf:SOL-S@node,13000,
gmax_KsAxon:SOL-S@node,40500,
gmax_H:SOL-S@internode,9,
gmax_Kf:SOL-S@internode,630,
gmax_KsAxon:SOL-S@internode,2,
%%% RC
gmax_Na:RC_ext-@soma,30000,
gmax_Kf:RC_ext-@soma,1000,
gmax_Ks:RC_ext-@soma,4000,
%States
PulseDur_m,0.6,
PulseDur_h,0.6,
PulseDur_n,0.6,
PulseDur_q,0.6,
PulseDur_mp,0.6,
PulseDur_qh,0.6,
PulseDur_s,0.6,
%% SOL
alpha_m:SOL-S@soma,22,
alpha_h:SOL-S@soma,0.5,
alpha_n:SOL-S@soma,1.5,
alpha_q:SOL-S@soma,1.5,
beta_m:SOL-S@soma,13,
beta_h:SOL-S@soma,4,
beta_n:SOL-S@soma,0.1,
beta_q:SOL-S@soma,0.025,
alpha_m:SOL-FR@soma,22,
alpha_h:SOL-FR@soma,0.5,
alpha_n:SOL-FR@soma,1.5,
alpha_q:SOL-FR@soma,1.5,
beta_m:SOL-FR@soma,13,
beta_h:SOL-FR@soma,4,
beta_n:SOL-FR@soma,0.1,
beta_q:SOL-FR@soma,0.05,
alpha_m:SOL-FF@soma,22,
alpha_h:SOL-FF@soma,0.5,
alpha_n:SOL-FF@soma,1.5,
alpha_q:SOL-FF@soma,1.5,
beta_m:SOL-FF@soma,13,
beta_h:SOL-FF@soma,4,
beta_n:SOL-FF@soma,0.1,
beta_q:SOL-FF@soma,0.05,
alpha_m:SOL-S@node,256,
alpha_h:SOL-S@node,0.62,
alpha_mp:SOL-S@node,186,
alpha_n:SOL-S@node,2.45,
alpha_s:SOL-S@node,0.21,
beta_m:SOL-S@node,18.5,
beta_h:SOL-S@node,8.1,
beta_mp:SOL-S@node,6.58,
beta_n:SOL-S@node,0.54,
beta_s:SOL-S@node,0.017,
alpha_n:SOL-S@internode,2.45,
alpha_s:SOL-S@internode,0.21,
alpha_qh:SOL-S@internode,0.00077,
beta_n:SOL-S@internode,0.54,
beta_s:SOL-S@internode,0.017,
beta_qh:SOL-S@internode,177.54,
%% RC
alpha_m:RC_ext-@soma,22,
alpha_h:RC_ext-@soma,0.5,
alpha_n:RC_ext-@soma,1.5,
alpha_q:RC_ext-@soma,1.5,
beta_m:RC_ext-@soma,13,
beta_h:RC_ext-@soma,4,
beta_n:RC_ext-@soma,0.1,
beta_q:RC_ext-@soma,0.07,
% Motoneurons
cytR,70,
membCapac,1,
%% SOL
%%% S
position:SOL-,0,18
threshold:SOL-S,12.35,16.45
threshold:SOL-FR,16.45,19.3
threshold:SOL-FF,19.3,20.9
d@dendrite:SOL-S,41.5,62.5
d@dendrite:SOL-FR,62.5,83.5
d@dendrite:SOL-FF,83.5,92.5
d@soma:SOL-S,77.5,82.5
d@soma:SOL-FR,82.5,87.5
d@soma:SOL-FF,87.5,112.5
d@node:SOL-S,6,6
d@internode:SOL-S,12.5,12.5
l@dendrite:SOL-S,5519,6789
l@dendrite:SOL-FR,6789,8058
l@dendrite:SOL-FF,8058,10578
l@soma:SOL-S,77.5,82.5
l@soma:SOL-FR,82.5,87.5
l@soma:SOL-FF,87.5,112.5
l@node:SOL-S,75,75
l@internode:SOL-S,1700,1700
res@dendrite:SOL-S,14350,10650
res@dendrite:SOL-FR,10650,6950
res@dendrite:SOL-FF,6950,6050
res@soma:SOL-S,1150,1050
res@soma:SOL-FR,1050,950
res@soma:SOL-FF,950,650
res@node:SOL-S,120,120
res@internode:SOL-S,280000,280000
EqPot@dendrite,0,
EqPot@soma,0,
EqPot@node,-14.4,
EqPot@internode,-14.6,
IPump@dendrite,0,
IPump@soma,0,
IPump@internode,0.00786,
IPump@node,0.0333,
twitchTimePeak:SOL-S,170.0,132.5
twitchTimePeak:SOL-FR,135.5,100.5
twitchTimePeak:SOL-FF,100.5,86
twitchPeak:SOL-S,0.03,1.9
twitchPeak:SOL-FR,1.9,2.5
twitchPeak:SOL-FF,2.5,3
bSatSOCDS:SOL-S,0.7,0.5
bSatSOCDS:SOL-FR,0.5,0.3
bSatSOCDS:SOL-FF,0.3,0.23
twTetSOCDS:SOL-S,2.97,4.08
twTetSOCDS:SOL-FR,4.08,6.71
twTetSOCDS:SOL-FF,6.71,8.73
EMGAmplitude:SOL-S,0.003,0.19
EMGAmplitude:SOL-FR,0.19,0.25
EMGAmplitude:SOL-FF,0.25,0.3
EMGDuration:SOL-S,0.8,0.7
EMGDuration:SOL-FR,0.7,0.6
EMGDuration:SOL-FF,0.6,0.5
axonDelayThreshold:SOL-S,18,12.4
axonDelayThreshold:SOL-FR,12.4,12.2
axonDelayThreshold:SOL-FF,12.2,12.0
axonDelayCondVel:SOL-S,44,51
axonDelayCondVel:SOL-FR,51,52
axonDelayCondVel:SOL-FF,52,53
axonDelayRefPeriod_PTN,5,
axonDelayLeakTimeConstant:SOL-S,10,10
axonDelayLeakTimeConstant:SOL-FR,10,10
axonDelayLeakTimeConstant:SOL-FF,10,10
% Interneurons
%% RC
position:RC_ext-,0,18
threshold:RC_ext-,5,15
d@soma:RC_ext-,25,25
l@soma:RC_ext-,242,242
res@soma:RC_ext-,760,760
% Afferents
axonDelayCondVel:Ia-SOL-,55,66
axonDelayThreshold:Ia-SOL-,18,8
axonDelayLeakTimeConstant:Ia-SOL-,10,10
threshold:Ia-SOL,12.35,19
axonDelayCondVel:Ia-LG-,55,66
axonDelayThreshold:Ia-LG-,18,8
axonDelayLeakTimeConstant:Ia-LG-,10,10
threshold:Ia-LG,12.35,19
axonDelayCondVel:Ia-TA-,55,66
axonDelayThreshold:Ia-TA-,18,8
axonDelayLeakTimeConstant:Ia-TA-,10,10
threshold:Ia-TA,12.35,19
GammaOrder_Ia-SOL,25,
GammaOrder_Ia-LG,25,
GammaOrder_Ia-TA,25,
frequencyThreshold:Ia-SOL-,0,50
frequencyThreshold:Ia-LG-,0,50
frequencyThreshold:Ia-TA-,0,50
% Muscles
%% SOL
Fmax:SOL,3586,
optimalMuscleLength:SOL,0.0490,
initialMuscleLength:SOL,0.0525,
optimalPennationAngle:SOL,0.4939,
bTypeI:SOL,2.3,
bTypeII:SOL,1.55,
pTypeI:SOL,1.62,
pTypeII:SOL,2.12,
wTypeI:SOL,1.12,
wTypeII:SOL,0.75,
dTypeI:SOL,0.00035,
dTypeII:SOL,0.00069,
a0TypeI:SOL,-0.0047,
a0TypeII:SOL,-0.00153,
a1TypeI:SOL,0.00841,
a1TypeII:SOL,0,
a2TypeI:SOL,-0.00534,
a2TypeII:SOL,0,
c0TypeI:SOL,5.88,
c0TypeII:SOL,-5.7,
c1TypeI:SOL,0,
c1TypeII:SOL,9.18,
m0:SOL,0.32284,
m1:SOL,7.2186e-4,
m2:SOL,-2.2431e-6,
m3:SOL,-3.1478e-8,
m4:SOL,9.2739e-11,
n0:SOL,-0.041363,
n1:SOL,2.5739e-4,
n2:SOL,5.4507e-6,
n3:SOL,-2.2185e-8,
n4:SOL,-5.4944e-11,
VmaxTypeI:SOL,-0.00788,
VmaxTypeII:SOL,-0.00915,
muscleElasticity:SOL,5,
muscleViscosity:SOL,5,
muscleStrain:SOL,0.5,
muscleMass:SOL,0.68,
tendonElasticity:SOL,27.8,
tendonLinearOnsetLength:SOL,0.96,
tendonCurvatureConstant:SOL,0.005,
optimalTendonLength:SOL,0.289,
thickness:SOL,18.4,
%Muscle Spindles
freqBag1,60,
freqBag2,60,
freqChain,90,
tauBag1,149,
tauBag2,205,
beta0Bag1,60.5,
beta0Bag2,82.2,
beta0Chain,82.2,
beta1Bag1,259.2,
beta2Bag2,-46,
beta2Chain,-69,
GAMMA1Bag1,0.0289,
GAMMA2Bag2,0.0636,
GAMMA2Chain,0.0954,
KsrBag1,10.4649,
KsrBag2,10.4649,
KsrChain,10.4649,
MBag1,0.000200,
MBag2,0.000200,
MChain,0.000200,
L0SrBag1,0.04,
L0SrBag2,0.04,
L0SrChain,0.04,
RBag1,0.46,
RBag2,0.46,
RChain,0.46,
KPrBag1,0.46,
KPrBag2,0.15,
KPrChain,0.15,
L0PrBag1,0.76,
L0PrBag2,0.76,
L0PrChain,0.76,
GPrimaryBag1,20000,
GPrimaryBag2,10000,
GPrimaryChain,10000,
LNSrBag1,0.0423,
LNSrBag2,0.0423,
LNSrChain,0.0423,
LNPrBag2,0.89,
LNPrChain,0.89,
SOcclusionFactor,0.152,