This utility prints out the commands needed to convert and rename the files in a raw data directory to BIDS. The raw directory should contain DICOM and/or CTF files in a BIDS-like organization in the format of raw data that is automatically streamed at the Donders.
Prior to using this tool, you can use the reorganize_dicom_files and the reorganize_ctf_files tools to reorganize existing data into a BIDS-like structure.
After converting the data, you can use the create_sidecar_files tool to create the additional JSON and TSV sidecar files and/or to the MATLAB-based data2bids function that is part of FieldTrip.
This utility prints out the commands needed to convert and rename the
files in a raw data directory to BIDS. The raw directory should contain
the DICOM and the CTF data files in a BIDS-like organization, like we
have them at the Donders.
Prior to using this tool, you can use the reorganize_dicom_dataset and
the reorganize_ctf_dataset tools to reorganize existing data into a
BIDS-like structure.
Use as
./convert_raw_to_bids -s <SOURCEDIR> -t <TARGETDIR>