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empirical distributions #37

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roblanf opened this issue Apr 9, 2019 · 1 comment
Open

empirical distributions #37

roblanf opened this issue Apr 9, 2019 · 1 comment
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feature request if you want something new that's not a new dataset

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@roblanf
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roblanf commented Apr 9, 2019

Suha's idea:

Include empirical distributions of all the things for all the datasets.

E.g.:

branch lengths
GTR model parameters (also NonRev model parameters)
base frequencies (these are already in the AMAS files)
tree balance (per locus?? per dataset)

Lots of decisions to make here, but this has the potential to be a very useful resource.
@roblanf roblanf added the feature request if you want something new that's not a new dataset label Apr 9, 2019
@roblanf
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roblanf commented Apr 10, 2019

Other things to include:

likelihood mapping
treelikeness
proportion of all possible quartets from the tree that are in the various 'zones' (e.g. felsenstein, farris, etc.)

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