diff --git a/README.md b/README.md index 55a0793..48eb3c7 100644 --- a/README.md +++ b/README.md @@ -36,10 +36,7 @@ cd `mktemp -d` wget --user $RB_USERNAME \ --password $RB_PASSWORD \ -O repeatmaskerlibraries.tar.gz \ - http://www.girinst.org/server/RepBase/protected/repeatmaskerlibraries/repeatmaskerlibraries-20140131.tar.gz - -# Rename the tar.gz archive to 'repeatmaskerlibraries.tar.gz' -mv repeatmaskerlibraries-20140131.tar.gz repeatmaskerlibraries.tar.gz + http://www.girinst.org/server/RepBase/protected/repeatmaskerlibraries/RepBaseRepeatMaskerEdition-20170127.tar.gz # Make an (almost) empty Dockerfile. # All of the important instructions are in the repeatmasker-onbuild image diff --git a/dockerfiles/nf-repeatmasking/Dockerfile b/dockerfiles/nf-repeatmasking/Dockerfile index 1e9310b..6e606c0 100644 --- a/dockerfiles/nf-repeatmasking/Dockerfile +++ b/dockerfiles/nf-repeatmasking/Dockerfile @@ -127,11 +127,11 @@ RUN apt-get install -qqy aragorn # I can't bundle the girinst RepBase libraries with the docker image, # so you'll need to get them yourself. Download them from -# http://www.girinst.org/server/RepBase/protected/repeatmaskerlibraries/repeatmaskerlibraries-20140131.tar.gz +# http://www.girinst.org/server/RepBase/protected/repeatmaskerlibraries/RepBaseRepeatMaskerEdition-20170127.tar.gz ONBUILD WORKDIR /usr/local/RepeatMasker ONBUILD ADD repeatmaskerlibraries.tar.gz /usr/local/RepeatMasker -ONBUILD RUN cd /usr/local/RepeatMasker && util/buildRMLibFromEMBL.pl Libraries/RepeatMaskerLib.embl > Libraries/RepeatMasker.lib \ +ONBUILD RUN cd /usr/local/RepeatMasker && util/buildRMLibFromEMBL.pl Libraries/RMRBSeqs.embl > Libraries/RepeatMasker.lib \ && makeblastdb -dbtype nucl -in Libraries/RepeatMasker.lib > /dev/null 2>&1 \ && makeblastdb -dbtype prot -in Libraries/RepeatPeps.lib > /dev/null 2>&1