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vignettes/mapmetadata.Rmd

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@@ -41,7 +41,7 @@ It is recommended to view the descriptions of each table to give you more contex
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# Understanding mapping outputs
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Running [metadata_map](https://docs.ropensci.org/mapmetadata/ reference/metadata_map.html) will run this function in demo mode (as explained in the README) and generate six files in your project directory.
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Running [metadata_map](https://docs.ropensci.org/mapmetadata/reference/metadata_map.html) will run this function in demo mode (as explained in the README) and generate six files in your project directory.
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By default, the demo mode processes the first 5 variables in a table. Running `metadata_map(demo_number = 20)` will process the first 20 variables in a table.
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Here you can [view outputs generated from this longer demo run](https://github.com/ropensci/mapmetadata/tree/main/inst/outputs/), which include:
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- **MAPPING_360_NCCHD_CHILD_timestamp.csv**
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- The mappings between variables in the CHILD table and the research domains.
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- **L-MAPPING_360_NCCHD_CHILD_timestamp.csv**
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- The same mappings as the previous file, but saved in a longer format. See the argument `long_output = TRUE` in [metadata_map](https://docs.ropensci.org/mapmetadata/ reference/metadata_map.html). If `long_output = FALSE` was used, the long outputs can be generated by directly calling the [map_convert](https://docs.ropensci.org/mapmetadata/ reference/map_convert.html) function.
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- The same mappings as the previous file, but saved in a longer format. See the argument `long_output = TRUE` in [metadata_map](https://docs.ropensci.org/mapmetadata/reference/metadata_map.html). If `long_output = FALSE` was used, the long outputs can be generated by directly calling the [map_convert](https://docs.ropensci.org/mapmetadata/reference/map_convert.html) function.
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- **MAPPING_LOG_360_NCCHD_CHILD_timestamp.csv**
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- A log file that accompanies the MAPPING file, describing features of the session and the table processed.
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- **MAPPING_PLOT_360_NCCHD_CHILD_timestamp.png**
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- A simple visual representation of the mappings, displaying the count of each domain code.
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# Compare mapping
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Running the function [map_compare](https://docs.ropensci.org/mapmetadata/ reference/map_compare.html) will allow you to compare the mappings from two sessions, perhaps two different researchers. This function compares csv outputs from two sessions, finds their differences, and asks for a consensus, creating a new output file:
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Running the function [map_compare](https://docs.ropensci.org/mapmetadata/reference/map_compare.html) will allow you to compare the mappings from two sessions, perhaps two different researchers. This function compares csv outputs from two sessions, finds their differences, and asks for a consensus, creating a new output file:
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**CONSENSUS_MAPPING_360_NCCHD_CHILD_timestamp.csv**
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GNDR_CD DEMOGRAPHICS
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```
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The default lookup table (printed above) governs the automatic categorisations within the [metadata_map](https://docs.ropensci.org/mapmetadata/ reference/metadata_map.html) function:
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The default lookup table (printed above) governs the automatic categorisations within the [metadata_map](https://docs.ropensci.org/mapmetadata/reference/metadata_map.html) function:
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1. When a variable needs to be mapped to a domain, before asking the user it searches the lookup table
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2. If the variable name is contained within the 'Variable' column of the lookup table, this triggers the auto-categorisation
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# Copying across tables
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If you're processing multiple tables (i.e. in run one of [metadata_map](https://docs.ropensci.org/mapmetadata/ reference/metadata_map.html) select table one, in run two select table two) save all outputs in the same directory to enable table copying. This feature will speed up categorisation and ensure consistency.
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If you're processing multiple tables (i.e. in run one of [metadata_map](https://docs.ropensci.org/mapmetadata/reference/metadata_map.html) select table one, in run two select table two) save all outputs in the same directory to enable table copying. This feature will speed up categorisation and ensure consistency.
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If it finds other MAPPING files with the same ID_Name in the output directory, and they contain overlapping variables, it will automatically copy the mappings from this previous table to the current table.
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```r

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