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<h1 class="title toc-ignore">R. Bruel > Coding/programming</h1>
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<div id="codingprogramming" class="section level3">
<h3>Coding/programming</h3>
<hr />
<p>When I first used R, I would have never thought I would like it that
much (heard that before?). I do most of my work in R because I don’t
have any limitation in term of analyses, and it grants reproducibility
of my results. I am also very reluctant to use any software that is not
freely available, because it limits potential collaboration.</p>
<p>My GitHub gathers some of my past and current projects. While you’re
here, have a look at:</p>
<ul>
<li>The code to reproduce the analyses from our paper
<a href="https://www.researchgate.net/publication/323394346_Seeking_alternative_stable_states_in_a_deep_lake" target="_blank">‘Seeking
alternative stable states in a deep lake’</a> (Bruel et al, 2018) is
available
<a href="https://github.com/rosalieb/AltStableStates" target="_blank">here</a>.</li>
<li>Our R package
<a href="https://github.com/rosalieb/serac" target="_blank"><em>serac</em></a>.
See the accompanying paper in Journal of Environmental Radioactivity
(Bruel & Sabatier, 2020).
<a href="https://eartharxiv.org/repository/view/461/">Link</a> to the
preprint (DOI: 10.31223/osf.io/f4yma).
<a href="files/serac.html">Link</a> to the vignette.</li>
<li>The code to reproduce the analyses from our paper
<a href="https://www.sciencedirect.com/science/article/pii/S1470160X20310359" target="_blank">‘Sampling
requirements and approaches to detect ecosystem shifts’</a> (Bruel &
White, 2021) is available
<a href="https://github.com/rosalieb/temporal-sampling" target="_blank">here</a>.</li>
<li>The code to reproduce this website is on my GitHub as well,
<a href="https://github.com/rosalieb/rosaliebruelweb" target="_blank">here</a>.
I used
<a href="https://www.emilyzabor.com/tutorials/rmarkdown_websites_tutorial.html">Emily
C. Zabor’s tutorial</a>.</li>
<li>Our R package
<a href="https://github.com/rosalieb/rhobo" target="_blank"><em>rhobo</em></a>,
developped with Sophie Guillon (Mines ParisTech) to handle and calibrate
HOBO data from the PLANAQUA lake-mesocosmsat the <a
href="https://www.cereep.bio.ens.psl.eu/spip.php?article45">CEREEP-Ecotron</a>.</li>
</ul>
<center>
<p><a href="https://github.com/rosalieb/serac"><img src="images/icons/hex-serac6.png" height="110" width="95" ></a>
<a href="https://github.com/rosalieb/rhobo" target="_blank"><img src="images/icons/hex-rhobo3.png" height="110" width="95" ></a></p>
</center>
</div>
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