- Added
DOP
water quality data.
- Added temperature and conductivity to
USGS_CAWSC
- Added DO and pH data to all surveys that collect this data.
USGS_SFBS
collects both calculated (from a sensor) and discrete DO, so we used discrete DO up to 2016 and calculated DO afterwards to mirror the methodological change that occurred in theEMP
survey in 2016. - Updated to newest EMP data with some historical data issues fixed.
- Added NCRO laboratory and water quality data
- Added bottom conductivity to
twentymm
,baystudy
,SDO
,FMWT
, andSTN
- Added turbidity to
EMP
,FMWT
, andSTN
- Fixed timezones for
SDO
data. SDO times are reported in PST but had incorrectly been imported as local time (PST/PDT). Now, they are imported as Etc/GMT+8 and then converted to America/Los_Angeles to correspond to the other surveys. - Updated STN, FMWT, EDSM, DJFMP, SLS, Suisun, EMP, USGS_SFBS, USGS_CAWSC, YBFMP, SKT, 20mm, baystudy, and SDO datasets
- Removed rows from
FMWT
andSTN
datasets that did not contain any water quality information
- Fixing error where
YBFMP
Secchi data was in meters. Converted it to cm for consistency with other surveys. - Adding
Secchi_estimated
variable toFMWT
data
- Changed the name of the
USGS
survey toUSGS_SFBS
to avoid confusion with the newUSGS_CAWSC
survey. - Added USGS_CAWSC data.
- Add reporting limits (RLs) to EMP data.
- Updated STN data to newest version with 2021 data
- Added nutrient data to EMP and USGS datasets.
- Added the Yolo Bypass Fish Monitoring Program data
- Added Stockton Dissolved Oxygen survey as an additional data source
- Removed duplicated water quality data from suisun data
- Added Smelt Larva Survey as an additional data source
- Tweaked the wq function interface to force users to specify data sources, in preparation for adding more sources.
- Updated the DJFMP, EDSM, EMP, FMWT, SKT, STN, USGS, 20mm, Suisun datasets to their latest version
- Fixed timezones for EMP data. EMP times are reported in PST but had incorrectly been imported as local time (PST/PDT). Now, they are imported as Etc/GMT+8 and then converted to America/Los_Angeles to correspond to the other surveys.
- Publishing to link with data publication.
- Fixing one tide value of 0 from SKT by converting it to NA.
- Undoing previous DJFMP change and now retaining all DJFMP data (except duplicates at the same date and time)
- Changing EDSM station variable to reflect each unique random 'site' so it is possible to identify replicate tows at the same location
- Tweaked USBR data to retain the average sample time across all depths (previously it used the earliest sample time).
- Tweaked DJFMP data to keep the datapoint closest to noon of each day (previously it was averaging across all time points)
- Added conductivity data from EDSM and DJFMP after 06/01/2019 when it was standardized to specific conductivity
- Added a
NEWS.md
file to track changes to the package.