Bandage v0.5.6

Features:

• When drawing a graph in double node, nodes and their complement nodes are now shifted slightly apart.
• Create a new, lower quality setting for graph layout, appropriate for very large graphs.
• Add website link to 'Help' menu.

Bug fixes:

• Fix rounding issue where the viewport zoom didn't always change when it should.
• Allow a wider range of node and edge widths.

Bandage v0.5.5

Features:

• Bandage now automatically chooses a 'Base pairs per segment' setting when a graph is loaded. Users can switch between this automatic value or a user-specified value.
• A more flexible system is used for determining node width using coverage. It allows for non-linear relationships, preventing very high coverage nodes from appearing excessively wide. A plot in the settings dialog previews the function between node coverage and node width.

Bug fixes:

• Performance fix for when node width is changed for a large graph.
• Performance fix for unloading large graphs.

Bandage v0.5.4

Features:

• A filename can be passed as a command line argument, and Bandage will load the file immediately upon opening.

Bug fixes:

• Fix bug when BLAST queries end in a dot
• Fix potential crash when specifying Trinity.fasta node numbers in the 'Around nodes' graph scope
• Fix misplaced help icon in settings dialog

Bandage v0.5.3

Features:

• Add a timeout parameter in the BLAST search window to allow for longer searches

Bug fixes:

• Fix bug where not all BLAST hits are not displayed in single node mode (thanks Rayan Chikhi!)
• Fix graphical issues with displaying BLAST hits in double node mode
• Allow for another Trinity.fasta header format
• Added additional BLAST path locations for Mac
• Fix bug where colour scheme incorrectly changed after a custom node colour was set

Bandage v0.5.2

Features:

• Improve overall graphical performance
• Change default settings to no node outline (for improved performance)
• Change default colour scheme to 'Random colours' (works better with no outlines)

Bug fixes:

• Fix bug where node shape is incorrectly defined after width settings are changed.

Bandage v0.5.1

New features:

• 'Select' menu with options to automatically select/deselect particular nodes
• 'Random colours' mode now has an opacity setting

Bug fixes:

• Allow loading of Trinity.fasta files with different formats
• Contiguity colouring now properly handles multiple starting nodes

Bandage v0.5.0

New features:

• Support for Trinity.fasta files
• New colour scheme with contiguity determination
• More colour configuration option in the program settings
• Transparent colours now possible for node colours
• Simplified node width settings

Bug fixes:

• Loading corrupt files now results in error message instead of crash
• Increased tolerance of FASTG files that are missing complement nodes

Bandage v0.4.2

Bug fixes:

• The save image items in the File menu now properly enable after a graph is drawn.
• Graphs with no coverage data now display properly.
• Bandage now remembers the directory used for loading or saving files, for use the next time a file is loaded or saved.

Bandage v0.4.1

Bug fixes:

• Gracefully handle FASTG files with complement-less nodes
• Coordinate node/edge counts with what is seen in an entire-graph single node scope
• Allow negative nodes to be used in 'Around nodes' scope
• Colour choosing dialogs could be hidden behind other windows

Bandage v0.4.0

New features:

• Integrated BLAST search
• Help text integrated into UI
• Additional settings
• More configuration of colouring by coverage
• Ability to cancel graph layout