dplyr 1.0.6

[romainfrancois]

I'm seeing this when I test DAISIE against the release candidate of dplyr 1.0.6:

══ Reverse dependency check ══════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════ DAISIE 3.0.1 ══

Status: BROKEN

── Still failing

x checking package dependencies ... NOTE

── Newly failing

x checking examples ... ERROR

── Before ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
> checking package dependencies ... NOTE
  Package which this enhances but not available for checking: ‘doMC’

0 errors ✓ | 0 warnings ✓ | 1 note x

── After ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
> checking examples ... ERROR
  Running examples in ‘DAISIE-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: DAISIE_plot_input
  > ### Title: DAISIE tree plot
  > ### Aliases: DAISIE_plot_input
  > 
  > ### ** Examples
  > 
  > 
  >  # check whether package tibble has been installed
  >  if (!requireNamespace('tibble', quietly = TRUE)) {
  +     cat("Package tibble needed for this function to work. Please install it.")
  +  } else {
  +  set.seed(42)
  + 
  +  # Random trees
  +  t1 <- ape::rtree(10)
  +  t1$tip.label <- gsub("t", "t1.", t1$tip.label)
  +  t2 <- ape::rtree(3)
  +  t2$tip.label <- gsub("t", "t2.", t2$tip.label)
  +  t3 <- DAISIE:::DAISIE_single_branch(
  +    "t3.1",
  +    edge.length = 4.6
  +  ) # tree with one species
  +  trees <- list(t1, t2, t3)
  +  names(trees) <- c("A", "B", "C")
  + 
  +  # Toy colonization events for each clade
  +  tcols <- c(4.5, 5, 4.6)
  + 
  +  # Toy metadata
  +  metadata <- tibble::tibble(
  +    clade = names(trees),
  +    endemic = TRUE,  # whether each clade is endemic
  +    uncertain = FALSE  # whether colonization time is known for sure
  +  )
  +  metadata$endemic[3] <- FALSE
  +  metadata$uncertain[2] <- TRUE
  + 
  +  # Island age
  +  age <- 5
  + 
  +  # Make a plot
  +  p <- DAISIE_plot_input(
  +    trees,
  +    age,
  +    tcols,
  +    metadata,
  +    mapping = ggplot2::aes(color = endemic, linetype = uncertain),
  +    pargs = list(size = 3)
  +  )
  + p
  + }
  Error in DataMask$new(.data, caller_env) : 
    argument "caller_env" is missing, with no default
  Calls: DAISIE_plot_input ... mutate.data.frame -> mutate_cols -> <Anonymous> -> initialize
  Execution halted

> checking package dependencies ... NOTE
  Package which this enhances but not available for checking: ‘doMC’

1 error x | 0 warnings ✓ | 1 note x

But so far I have failed to test locally. Initially here: tidyverse/dplyr#5810

[Neves-P]

Hi @romainfrancois, thanks so much for the heads-up and for reporting this!
We'll look into it and hopefully solve it soon. Will post updates on this issue as things progress 👍