rmg-visualize

#!/bin/bash
# Script by Richard West rwest@mit.edu
# For processing RMG results from a computer that doesn't have the dependencies.
# It copies the data to Rainier, runs the script there, and copies the results back.

RAND=$(( (`od -An -i -N2 /dev/random`) )) # strip the leading space!
REMOTEDIR=RMGresults-${RAND}
echo "Temporarily putting things in rainier:"$REMOTEDIR
# copy things to rainier
ssh rainier mkdir ${REMOTEDIR}
rsync -e ssh -rzt --delete --ignore-errors RMG_Dictionary.txt Final_Model.txt rainier:${REMOTEDIR}
rsync -e ssh -rzt --delete --ignore-errors chemkin/chem.inp chemkin/tran.dat  rainier:${REMOTEDIR}/chemkin
rsync -e ssh -rzt --delete --ignore-errors ODESolver/SpeciesProfiles.*  rainier:${REMOTEDIR}/ODESolver/
# process the results there
ssh rainier /home/rwest/RMG-Visualizer/processRMGresults.py ${REMOTEDIR}
# copy things back
rsync -e ssh -rztu rainier:${REMOTEDIR}/* ./
# delete the remote stuff
ssh rainier rm -rf ${REMOTEDIR}
echo "DONE! Check out your pdfs, pics, etc."