.gitignore

.vscode
z_old
# Do not sync files that are generated as part of the tutorial
## Data formatting
00_data_formatting/00_raw_data/alignment/log_lenseq.txt
00_data_formatting/00_raw_data/alignment/raw_aln.fasta
00_data_formatting/00_raw_data/trees/example_fordisplay_calib_MCMCtree.tree
00_data_formatting/00_raw_data/trees/cals_only_example.tree
00_data_formatting/01_inp_data
## PAML-BASEML
01_PAML/00_BASEML/out_RData
## PAML-MCMCtree
01_PAML/01_MCMCtree/dummy_aln
01_PAML/01_MCMCtree/calib_files
01_PAML/01_MCMCtree/out_RData
01_PAML/01_MCMCtree/plots
01_PAML/01_MCMCtree/sum_*
## Main `example_dating` directory (local PC)
example_dating
## Comment the results with the quick start, they only start with
## directory `00_inp_data`
quick_start/01_PAML/00_BASEML
quick_start/01_PAML/01_MCMCtree
quick_start/01_PAML/int_calibs/tree_display
quick_start/01_PAML/int_calibs/cals_only_mtcdnapri.tree
quick_start/01_PAML/dummy_aln
quick_start/01_PAML/out_RData
quick_start/01_PAML/plots
quick_start/01_PAML/sum_files_*