cluster.master.yaml

__default__:
    q: 'cmb'
    time: '7:00:00'
    mem: '10000MB'
    cores: 1
    logdir: '/home/cmb-06/as/skchoudh/logs/'

create_index:
    cores: 16
    mem: '61000MB'

create_rsem_index:
    cores: 16
    mem: '61000MB'

rsem_tx_level_counts:
    cores: 16
    mem: '61000MB'

map_star:
    time: '12:00:00'
    cores: 16
    mem: '61000MB'

featurecounts_exon:
    time: '12:00:00'
    cores: 16
    mem: '61000MB'

featurecounts_cds:
    time: '12:00:00'
    cores: 16
    mem: '61000MB'

count_coverage_gene:
    time: '24:00:00'
    cores: 1
    mem: '61000MB'

count_exon:
    time: '24:00:00'
    mem: '60000MB'

count_cds:
    time: '24:00:00'
    mem: '60000MB'

genelevel_normalized_counts:
    time: '10:00:00'
    mem: '60000MB'

genelevel_normalized_counts:
    time: '10:00:00'
    mem: '60000MB'

genelevel_normalized_counts_utr3:
    time: '10:00:00'
    mem: '60000MB'

create_tracks:
    time: '10:00:00'
    mem: '60000MB'

genelevel_normalized_counts_utr5:
    time: '10:00:00'
    mem: '60000MB'

genelevel_normalized_counts_offset30:
    time: '10:00:00'
    mem: '60000MB'

genelevel_normalized_counts_offset0:
    time: '10:00:00'
    mem: '60000MB'

extract_uniq_mapped_reads:
    time: '10:00:00'
    mem: '60000MB'
    cores: 16