setup.py

from setuptools import setup, find_packages, Extension
import numpy

setup(
    name='miplib',
    version='1.0.5',
    packages=find_packages(),
    install_requires=['numpy', 'scipy', 'h5py', 'SimpleITK', 'jpype1',
                      'matplotlib', 'pandas', 'pims', 'scikit-image', 'psf'],
    description='A Python software library for (optical) microscopy image restoration, reconstruction and analysis.',
    entry_points={
        'console_scripts': [
            'miplib.import = miplib.bin.import:main',
            'miplib.correlatem = miplib.bin.correlatem:main',
            'miplib.fuse = miplib.bin.fuse:main',
            'miplib.register = miplib.bin.register:main',
            'miplib.resolution = miplib.bin.resolution:main',
            'miplib.ism = miplib.bin.ism:main',
            'pyimq.main = miplib.bin.pyimq:main',
            'pyimq.subjective = miplib.bin.subjective:main',
            'pyimq.power = miplib.bin.power:main'
        ]
    },
    platforms=["any"],
    download_url="https://github.com/sakoho81/miplib/archive/v1.0.5.tar.gz",
    license='BSD',
    author='Sami Koho',
    author_email='sami.koho@gmail.com',
    ext_modules=[
        Extension(
            'miplib.processing.ops_ext',
            ['miplib/processing/src/ops_ext.c'],
            include_dirs=[numpy.get_include()]),
        Extension(
            'miplib.data.io._tifffile',
            ['miplib/data/io/src/tifffile.c'],
            include_dirs=[numpy.get_include()])
    ],
    classifiers=[
        'Development Status :: 3 - Alpha',
        'Intended Audience :: Developers',
        'Topic :: Software Development :: Libraries :: Python Modules',
        'License :: OSI Approved :: BSD License',
        'Programming Language :: Python :: 3.6',
  ]
)