From 63265d01b2d72d001363391c6b06494ddf447f7f Mon Sep 17 00:00:00 2001 From: Shane McCarthy Date: Thu, 21 Sep 2017 13:39:04 +0100 Subject: [PATCH] update NEWS file for upcoming release --- NEWS | 28 ++++++++++++++++++++++++++-- 1 file changed, 26 insertions(+), 2 deletions(-) diff --git a/NEWS b/NEWS index 887df8a6b..c05420bb5 100644 --- a/NEWS +++ b/NEWS @@ -1,10 +1,34 @@ -## Release a.b (Equinox) +## Release 1.6 (September 2017) + +* New `sort` command. * New options added to the `consensus` command. Note that the `-i, --iupac` option has been renamed to `-I, --iupac`, in favor of the standard `-i, --include`. -* New `sort` command. +* Filtering expressions (`-i/-e`): support for `GT=` expressions and + for lists and ranges (#639) - see the man page for details. + +* `csq`: relax some GFF3 parsing restrictions to enable using Ensembl + GFF3 files for plants (#667) + +* `stats`: add further documentation to output stats files (#316) and + include haploid counts in per-sample output (#671). + +* `plot-vcfstats`: further fixes for Python3 (@nsoranzo, #645, #666). + +* `query` bugfix (#632) + +* `+setGT` plugin: new option to set genotypes based on a two-tailed binomial + distribution test. Also, allow combining `-i/-e` with `-t q`. + +* `mpileup`: fix typo (#636) + +* `convert --gvcf2vcf` bugfix (#641) + +* `+mendelian`: recognize some mendelian inconsistencies that were + being missed (@oronnavon, #660), also add support for multiallelic + sites and sex chromosomes. ## Release 1.5 (June 2017)