From 2212df8145039c4a481a4f14a9cbc74589cdacb2 Mon Sep 17 00:00:00 2001 From: andrewjpage Date: Sun, 21 May 2017 15:26:56 +0100 Subject: [PATCH] inflation value usage --- lib/Bio/Roary/CommandLine/Roary.pm | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/lib/Bio/Roary/CommandLine/Roary.pm b/lib/Bio/Roary/CommandLine/Roary.pm index aa7e293..8c8b0c8 100644 --- a/lib/Bio/Roary/CommandLine/Roary.pm +++ b/lib/Bio/Roary/CommandLine/Roary.pm @@ -101,7 +101,7 @@ sub BUILD { 'k|kraken_db=s' => \$kraken_db, 'w|version' => \$cmd_version, 'a|check_dependancies' => \$check_dependancies, - 'inflation_value=f' => \$inflation_value, + 'iv|inflation_value=f' => \$inflation_value, 'h|help' => \$help, ); @@ -347,6 +347,7 @@ Options: -p INT number of threads [1] -v verbose output to STDOUT -w print version and exit -y add gene inference information to spreadsheet, doesnt work with -e + -iv STR Change the MCL inflation value [1.5] -h this help message Example: Quickly generate a core gene alignment using 8 threads