Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Bowtie2 ERROR #341

Open
Mx-Chpl opened this issue Aug 8, 2024 · 0 comments
Open

Bowtie2 ERROR #341

Mx-Chpl opened this issue Aug 8, 2024 · 0 comments

Comments

@Mx-Chpl
Copy link

Mx-Chpl commented Aug 8, 2024

Hello,

I install ariba via conda as conda install bioconda::ariba and I've got an issue with bowtie2;

ERROR: I tried to get the version of bowtie2 with: "/Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/bin/bowtie2 --version" and the output didn't match this regular expression: ".*bowtie2.version (.)$"

Something wrong with at least one dependency. Please see the above error message(s)
ARIBA version: 2.14.6

External dependencies:
bowtie2 ERROR /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/bin/bowtie2
cdhit 4.6 /Softs/bioinfo/cd-hit/4.6.1/cd-hit-est
nucmer 3.1 /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/bin/nucmer

External dependencies OK: False

Python version:
3.9.15 | packaged by conda-forge | (main, Nov 22 2022, 08:45:29)
[GCC 10.4.0]

Python packages:
ariba 2.14.6 /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/lib/python3.9/site-packages/ariba/init.py
bs4 4.12.3 /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/lib/python3.9/site-packages/bs4/init.py
dendropy 5.0.1 /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/lib/python3.9/site-packages/dendropy/init.py
pyfastaq 3.17.0 /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/lib/python3.9/site-packages/pyfastaq/init.py
pymummer 0.11.0 /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/lib/python3.9/site-packages/pymummer/init.py
pysam 0.18.0 /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/lib/python3.9/site-packages/pysam/init.py

Python packages OK: True

Everything looks OK: False
Some dependencies not satisfied. Cannot continue.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant