There is not detailed_serogroup_info

[juanjo255]

Hello!

I am trying to use SeroBA for serotyping a paired-end sequencing of a cultivated pneumococcus which has high coverage.

At the end, I only got a pred.tsv that explicitly said what was my serotype. However, I would like to get more information, for example, about the percentage of identity. In the documentation, it said that the program would also output a detailed_serogroup_info, nonetheless it is not there. What could be wrong?

I downloaded seroBA using conda. I had to downgrade KMC to 3.1.2 and apply this #327 for pysam.

I hope you can help me,

Thank you,

Juan