Closed issues:
- SegFault for unknown reason #72
Merged pull requests:
v2.4.1 (2018-10-04)
Implemented enhancements:
- Print to screen #63
Fixed bugs:
- Docker file typo #60
Closed issues:
- Info in VCF output format #68
Merged pull requests:
- Include docker and conda badges #70 (ssjunnebo)
- fixed Dockerfile #67 (trstickland)
v2.4.0 (2018-01-29)
Fixed bugs:
- segmentation fault with
-boption #58 - Segmentation fault with larger sequences (on Desktop and HPC) #57
Closed issues:
- Gaps not reported in output? #61
Merged pull requests:
- update readme #65 (ssjunnebo)
- Jk seg fault #59 (andrewjpage)
2.3.3 (2017-06-09)
Closed issues:
- brew recipe needs to be updated to the latest release. #55
- Linuxbrew installation issue (links issue) #54
Merged pull requests:
2.3.2 (2016-05-12)
Closed issues:
2.3.1 (2016-03-18)
Merged pull requests:
- allow pure bases and monomorphic, making it work with BEAST #50 (andrewjpage)
2.3.0 (2016-03-17)
2.2.2 (2016-03-14)
Merged pull requests:
- make sure original API is not changed #49 (satta)
- update to 2.2.1 #48 (andrewjpage)
2.2.1 (2016-03-11)
Merged pull requests:
- adjust manpage #47 (satta)
- output reference and change name to snp-sites #46 (andrewjpage)
2.2.0 (2016-03-11)
Closed issues:
2.1.3 (2016-01-27)
Closed issues:
- possible to convert to redhat? #39
Merged pull requests:
- Ensure C99 compliance #42 (AidanDelaney)
- Test data #41 (andrewjpage)
- Running the clang static analyser turns up an issue with unintialised… #40 (AidanDelaney)
2.1.1 (2015-12-14)
Implemented enhancements:
- Opens <file> twice? #26
Fixed bugs:
- make check => cannot find -lsubunit #33
- autoreconf -i warnings => option 'subdir-objects' is disabled #29
Merged pull requests:
2.1.0 (2015-12-03)
Merged pull requests:
- Reduce times input file is opened #37 (andrewjpage)
2.0.3 (2015-12-03)
Closed issues:
- How do we run the tests? #30
- Add a --version switch? #27
- FYI - updated brew package to 2.x series #24
Merged pull requests:
- Bump version to 2.0.3 #36 (bewt85)
- 496468: Allow '?' in fasta input #35 (bewt85)
- Major cleanup to use standard C string functions #34 (tseemann)
- Add -V version flag (Issue #27) #32 (tseemann)
- Use stdio FILENAME_MAX for path char[] sizes #31 (tseemann)
- fix recent compilation failure in Debian #23 (satta)
2.0.2 (2015-09-03)
Merged pull requests:
- Remove a tab in VCF header #22 (bewt85)
- Added bt5 and Jorge emails (Jorge as path-help) #21 (aslett1)
2.0.1 (2015-07-17)
Merged pull requests:
- Add reference sequence length to VCF output #20 (bewt85)
- Change output format to show Genotype rather than Alt Base #19 (bewt85)
- Reformat README #18 (bewt85)
1.5.0 (2014-02-01)
1.4.11 (2014-01-24)
1.4.10 (2014-01-24)
1.4.9 (2014-01-24)
1.4.8 (2014-01-23)
1.4.7 (2014-01-23)
1.4.6 (2014-01-23)
1.4.5 (2014-01-23)
1.4.4 (2014-01-23)
1.4.3 (2014-01-23)
1.4.2 (2014-01-23)
1.4.1 (2014-01-21)
1.4 (2014-01-20)
1.3 (2014-01-15)
1.2 (2014-01-14)
1.1 (2014-01-13)
1.0 (2014-01-06)
0.1 (2013-07-25)
Merged pull requests:
- travis install check #17 (andrewjpage)
- travis autoreconf #16 (andrewjpage)
- travis ci #15 (andrewjpage)
- Update version and readme #14 (andrewjpage)
- Fix memory leaks #13 (andrewjpage)
- fix memory leaks and update make #12 (andrewjpage)
- GPL #11 (andrewjpage)
- rollback changes to fasta file parsing #10 (andrewjpage)
- print unequal length error message to stderr #9 (andrewjpage)
- vcf coords from 1 #8 (andrewjpage)
- speedup #7 (andrewjpage)
- print out an error if the sequence lengths are uneven #6 (andrewjpage)
- speedup phylip creation #5 (andrewjpage)
- output filename #4 (andrewjpage)
- Tests for when an N is present in input #3 (andrewjpage)
- Choose output file formats #2 (andrewjpage)
- Treat N as a gap #1 (andrewjpage)