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Y25-022 - As a SSR (Liz C) I would like to be able to "Request Additional Sequencing" on a library on the Element Aviti sequencer so that we can use the new sequencer. #4604

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TWJW-SANGER opened this issue Jan 15, 2025 · 0 comments
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Element Aviti Phase 3 Size: M Medium - medium effort & risk

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TWJW-SANGER commented Jan 15, 2025

User story
As a SSR (Liz C) I would like to be able to "Request Additional Sequencing" on a library on the Element Aviti sequencer so that we can use the new sequencer.

Who are the primary contacts for this story
Tris B
Mike Q
Liz C
See our Confluence project page for "Element Aviti"

Who is the nominated tester for UAT
Tris B

Acceptance criteria

Consider if these features can be featured flagged to decouple testing and deployment.
To be considered successful the solution must allow:

  • For any additional sequencing that could be done on a MiSeq or NovaSeq 6000 the user can also request sequencing on the Aviti Element.
  • User can enter Study, Project, Priority and Number of Request as per normal.
  • The user can select from 3 Flowcell Kit Types - LO (Low Output), MO (Medium Output), HO (High Output)
  • For the LO (Low Output) flowcell kit the user can select a Read Length of 150.
  • For the MO (Medium Output) flowcell kit the user can select a Read Length of 75,150 or 300.
  • For the HO (High Output) flowcell kit the user can select a Read Length of 75, 150, or 300.
  • The user must enter the "% Element PhiX needed" as a number between 0-100 inclusice.
  • The user can enter the "Fragment size required (from)" as an integer number using a spinbox (as per NovaSeq)
  • The user can enter the "Fragment size required (to)" as an integer using a spinbox (as per NovaSeq).
  • The user can select the Library Type from a dropdown as appropriate for the pipeline.
  • The user can select the number of PCR Cycles using a spinbox as appropriate for the pipeline.
  • Submissions to this pipeline will have an additional option field of "Low Diversity" which can have the values "Yes" or "No".
  • The user must explicitly select a value for "Low Diversity" for the submission to be valid - it cannot be left blank.
  • Batches created will belong to a new sequencing pipeline "Element Aviti"
  • The submissions created will appear on the /submissions page.
  • User can add comments to the request.

Additional context
For example of an additional sequencing request page see /receptacles/48201667/new_request

Related to:
#4602
#4649

@psd-issuer psd-issuer bot changed the title As a TL (Tris) I would like to be able to "Request Additional Sequencing" on a library on the Element Aviti sequencer so that we can use the new sequencer. Y25-022 - As a TL (Tris) I would like to be able to "Request Additional Sequencing" on a library on the Element Aviti sequencer so that we can use the new sequencer. Jan 15, 2025
@TWJW-SANGER TWJW-SANGER changed the title Y25-022 - As a TL (Tris) I would like to be able to "Request Additional Sequencing" on a library on the Element Aviti sequencer so that we can use the new sequencer. Y25-022 - As a SSR (Liz C) I would like to be able to "Request Additional Sequencing" on a library on the Element Aviti sequencer so that we can use the new sequencer. Feb 19, 2025
@SujitDey2022 SujitDey2022 added Size: M Medium - medium effort & risk and removed Needs Refinement labels Feb 19, 2025
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