diff --git a/.idea/bpod-rig.iml b/.idea/bpod-rig.iml
index af14d19..80eecec 100644
--- a/.idea/bpod-rig.iml
+++ b/.idea/bpod-rig.iml
@@ -3,9 +3,9 @@
+
-
diff --git a/bpod_rig/IO/cli_io.py b/bpod_rig/IO/cli_io.py
new file mode 100644
index 0000000..b938cf9
--- /dev/null
+++ b/bpod_rig/IO/cli_io.py
@@ -0,0 +1,35 @@
+import logging
+from pathlib import Path
+
+import click
+
+logger = logging.getLogger(__name__)
+
+def yes_no_prompt(prompt: str) -> bool:
+ response = ''
+
+ while response not in ['y', 'n', 'Y', 'N']:
+ response = click.prompt(prompt, prompt_suffix=' [y/N] ')
+
+ if response in ['y', 'Y']:
+ return True
+ else:
+ return False
+
+def prompt_for_path(prompt: str) -> Path:
+ validated = False
+ path = []
+
+ while not validated:
+ unverified_path = click.prompt(prompt)
+ response = yes_no_prompt(f"Is {unverified_path} the correct path?")
+ if response:
+ try:
+ path = Path(unverified_path)
+ validated = True
+ except Exception as e:
+ logger.error("Invalid path: %s", exc_info=e)
+ click.echo("Invalid path entered, please try again.", err=True)
+
+ return path
+
diff --git a/bpod_rig/IO/default_setup.py b/bpod_rig/IO/default_setup.py
deleted file mode 100644
index b8e2faa..0000000
--- a/bpod_rig/IO/default_setup.py
+++ /dev/null
@@ -1,136 +0,0 @@
-"""Module to create the default Bpod user directory and associated subdirs"""
-
-import logging
-import shutil
-from pathlib import Path
-
-from bpod_rig.examples import calibration, settings
-
-DEFAULT_SUBDIRS = ["Config", "Protocols", "Data"]
-DEFAULT_DIR_NAME = "Bpod"
-
-logger = logging.getLogger(__name__)
-
-
-def create_default_directories(machine_id: str, default_path_override: Path = None) -> Path:
- """
- Create the default Bpod folder structure for a given machine.
-
- By default, the Bpod directory will be created inside the user's Documents
- folder with the following top-level subdirectories:
-
- Bpod/
- Config/
- Machine-/
- Calibration/
- Settings/
- Protocols/
- Data/
-
- This function only creates the directory structure — it does NOT populate
- default calibration or settings files. To copy default files, call
- `copy_default_files()` separately.
-
- Parameters
- ----------
- machine_id : str
- Name of the serial# or USB port for the target Bpod machine (e.g., "COM3", "EMU").
- Used to create a machine-specific directory inside Config.
- default_path_override : pathlib.Path, optional
- A path to override the default Bpod folder location. If not provided,
- the default location is `~/Documents/Bpod`.
-
- Returns
- -------
- pathlib.Path
- The path to the created Bpod directory.
- """
-
- # Default root is the Documents folder
- default_root_location = Path.home() / "Documents"
-
- if default_path_override:
- default_root_location = default_path_override
-
- bpod_folder_path = default_root_location / DEFAULT_DIR_NAME
-
- is_new_install = False
-
- if not bpod_folder_path.exists():
- logger.debug("Creating default Bpod user directory in %s", default_root_location)
- bpod_folder_path.mkdir(parents=True, exist_ok=True)
- is_new_install = True
- else: logger.debug("Bpod user directory found: %s", bpod_folder_path)
-
-
-
- # Create top-level subdirectories
- for subdir in DEFAULT_SUBDIRS:
- new_path = bpod_folder_path.joinpath(subdir)
- if not new_path.exists():
- logger.debug(
- "Creating default subdirectory [%s] in %s", subdir, bpod_folder_path
- )
- new_path.mkdir(parents=True, exist_ok=True)
-
- # Create machine-specific config folder
- machine_config_dir = bpod_folder_path.joinpath("Config", f"Machine-{machine_id}")
- machine_config_dir.mkdir(parents=True, exist_ok=True)
-
- calibration_dir = machine_config_dir.joinpath("Calibration")
- settings_dir = machine_config_dir.joinpath("Settings")
- calibration_dir.mkdir(parents=True, exist_ok=True)
- settings_dir.mkdir(parents=True, exist_ok=True)
-
- if is_new_install:
- logger.info("Bpod user directory initialized to %s", bpod_folder_path)
-
-
- return bpod_folder_path
-
-
-def copy_default_files(bpod_folder_path: Path, machine_id: str, override: bool = False):
- """
- Function to copy default settings and calibration .json files from the included
- examples package into the specified machine_id machine directory.
-
- Parameters
- ----------
- bpod_folder_path (pathlib.Path): Path to the Bpod directory
- machine_id (str): Name of the serial# or USB serial port (e.g., "COM3")
- override (bool) (Optional): Overwrite any existing files
-
- Returns
- -------
- None
- """
-
- # Locate target Calibration and Settings directories for this machine
- calibration_dir = bpod_folder_path.joinpath("Config", f"Machine-{machine_id}", "Calibration")
- settings_dir = bpod_folder_path.joinpath("Config", f"Machine-{machine_id}", "Settings")
-
- calibration_example_dir = Path(calibration.__path__[0])
- settings_example_dir = Path(settings.__path__[0])
- default_calibration_files = calibration_example_dir.glob("*.json")
- default_settings_files = settings_example_dir.glob("*.json")
-
- calibration_dir_contents = list(calibration_dir.iterdir())
- settings_dir_contents = list(settings_dir.iterdir())
-
- if len(calibration_dir_contents) == 0 or override:
- for cal_file in default_calibration_files:
- try:
- logger.debug("Copying %s to %s...", cal_file, calibration_dir)
- shutil.copy2(cal_file, calibration_dir)
- except Exception as e: # NOQA PERF203
- logger.error("Error copying %s! Original Exception: %s", cal_file, e)
-
- if len(settings_dir_contents) == 0 or override:
- for setting_file in default_settings_files:
- try:
- logger.debug("Copying %s to %s...", setting_file, settings_dir)
- shutil.copy2(setting_file, settings_dir)
- except Exception as e: # NOQA PERF203
- logger.error(
- "Error copying %s! Original Exception: %s", setting_file, e
- )
diff --git a/bpod_rig/IO/startup.py b/bpod_rig/IO/startup.py
new file mode 100644
index 0000000..69eacf6
--- /dev/null
+++ b/bpod_rig/IO/startup.py
@@ -0,0 +1,154 @@
+"""Module to create the default Bpod user directory and associated subdirs."""
+
+import logging
+import shutil
+from pathlib import Path
+
+from bpod_rig.examples import calibration, settings
+from bpod_rig.config import utils
+from bpod_rig.defaults import (
+ DEFAULT_SUBDIRS, SYSTEM_CONFIG_DIR, SYSTEM_CONFIG_FILE,
+)
+
+logger = logging.getLogger(__name__)
+
+
+def create_default_directories(bpod_directory_path: Path = None) -> Path:
+ """Create the default Bpod folder structure.
+
+ The Bpod directory will be created inside the given path with the following
+ top-level subdirectories:
+
+ Bpod/
+ Config/
+ Calibration/
+ Protocols/
+ Data/
+ Logs/
+
+ This function only creates the directory structure — it does NOT populate
+ default calibration or settings files. To copy default files, call
+ `copy_default_files()` separately.
+
+ Parameters
+ ----------
+ bpod_directory_path : pathlib.Path
+ The path to initialize the Bpod folder location
+
+ Returns
+ -------
+ pathlib.Path
+ The path to the created Bpod directory.
+ """
+ is_new_install = False
+
+ if not bpod_directory_path.exists():
+ logger.debug("Creating default Bpod user directory in %s", bpod_directory_path)
+ bpod_directory_path.mkdir(parents=True, exist_ok=True)
+ is_new_install = True
+ else:
+ logger.debug("Bpod user directory found: %s", bpod_directory_path)
+
+ # Create top-level subdirectories
+ for subdir in DEFAULT_SUBDIRS:
+ new_path = bpod_directory_path.joinpath(subdir)
+ if not new_path.exists():
+ logger.debug(
+ "Creating default subdirectory [%s] in %s", subdir, bpod_directory_path
+ )
+ new_path.mkdir(parents=True, exist_ok=True)
+
+ if is_new_install:
+ logger.info("Bpod user directory initialized to %s", bpod_directory_path)
+
+ return bpod_directory_path
+
+
+def copy_default_files(bpod_folder_path: Path, override: bool = False):
+ """Function to copy default files into their respective folders.
+
+ Copies the default calibration and configuration files from the examples module
+ to their respective directories.
+
+ Parameters
+ ----------
+ bpod_folder_path : pathlib.Path
+ Path to the Bpod directory
+ override : bool, optional
+ Overwrite any existing files
+
+ Returns
+ -------
+ None
+
+ """
+ # Locate target Calibration and Settings directories for this machine
+ calibration_dir = bpod_folder_path.joinpath("Calibration")
+ settings_dir = bpod_folder_path.joinpath("Config")
+
+ calibration_example_dir = Path(calibration.__path__[0])
+ settings_example_dir = Path(settings.__path__[0])
+ default_calibration_files = calibration_example_dir.glob("*.json")
+ default_settings_files = settings_example_dir.glob("*.json")
+
+ calibration_dir_contents = list(calibration_dir.iterdir())
+ settings_dir_contents = list(settings_dir.iterdir())
+
+ if len(calibration_dir_contents) == 0 or override:
+ for cal_file in default_calibration_files:
+ try:
+ logger.debug("Copying %s to %s...", cal_file, calibration_dir)
+ shutil.copy2(cal_file, calibration_dir)
+ except Exception as e: # NOQA PERF203
+ logger.error("Error copying %s!", cal_file)
+ raise e
+
+ if len(settings_dir_contents) == 0 or override:
+ for setting_file in default_settings_files:
+ try:
+ logger.debug("Copying %s to %s...", setting_file, settings_dir)
+ shutil.copy2(setting_file, settings_dir)
+ except Exception as e: # NOQA PERF203
+ logger.error("Error copying %s!", setting_file)
+ raise e
+
+
+def get_bpod_dir_from_system() -> Path | None:
+ """Attempts to get the Bpod directory path from the system configuration file
+
+ Checks to see if the system configuration directory exists, if so, check to see
+ if there is a system configuration file. If there is attempt to read the Bpod
+ directory path from the configuration file.
+
+ Returns
+ -------
+ pathlib.Path
+ Path to the Bpod directory read from the system configuration file
+ """
+
+ # Attempt to load and read path from system configuration file
+ system_settings = utils.load_system_configuration(SYSTEM_CONFIG_FILE)
+ return system_settings.paths.base_dir
+
+
+def check_system_is_initialized() -> bool:
+ """Checks whether Bpod has been initialized on this system before
+
+ If the system configuration directory does not exist, the system has not been initialized
+ If the system configuration directory exists, but the system_config.json file
+ does not exist, the system likely has only been partially initialized and needs to
+ be reinitialized.
+
+ Returns
+ ------
+ bool
+ True if system is initialized, False otherwise
+ """
+
+ if SYSTEM_CONFIG_DIR.exists():
+ logger.debug("System configuration directory found: %s", SYSTEM_CONFIG_DIR)
+ if SYSTEM_CONFIG_FILE.exists():
+ logger.debug("System configuration file found: %s", SYSTEM_CONFIG_FILE)
+ return True
+ return False
+
diff --git a/bpod_rig/__main__.py b/bpod_rig/__main__.py
index d4c28e5..1d46f1f 100644
--- a/bpod_rig/__main__.py
+++ b/bpod_rig/__main__.py
@@ -1,9 +1,12 @@
-"""main entry point for bpod-rig"""
+"""main entry point for bpod-rig."""
import logging
+from pydantic import ValidationError
from bpod_rig.config import utils
-from bpod_rig.IO import default_setup
+from bpod_rig.config.system_settings import SystemPaths
+from bpod_rig.IO import startup, cli_io
+from bpod_rig.defaults import DEFAULT_BPOD_PATH, SYSTEM_CONFIG_DIR, SYSTEM_CONFIG_FILE
logging.basicConfig(level=logging.DEBUG)
logger = logging.getLogger(__name__)
@@ -11,20 +14,109 @@
def main():
### Everything below is subject to change and is for testing purposes only
+ logger.info("Starting bpod-rig!")
+ # Let's put this in a BpodSystem class later
+ bpod_dir_verified = False
+ reinitialize = False
+ system_initialized = False
+ bpod_path = None
- logger.info("Initializing bpod-rig!")
- # Setup folders. "EMU" is the USB serial port argument for the emulator.
- # create_default_directories() is called later to add folders for each FSM on the PC
- bpod_directory = default_setup.create_default_directories("EMU")
+ ### Has Bpod been initialized on this system before? ###
+ system_initialized = startup.check_system_is_initialized()
+ if not system_initialized:
+ logging.debug(
+ "System is not initialized. Creating system config dir [%s]",
+ SYSTEM_CONFIG_DIR
+ )
+ # Create the system configuration directory
+ try:
+ SYSTEM_CONFIG_DIR.mkdir(exist_ok=True)
+ except (IOError, OSError) as e:
+ logger.error(
+ "Unable to create the system configuration directory: %s Exiting...",
+ SYSTEM_CONFIG_DIR,
+ exc_info=e
+ )
+ return
+ else:
+ logger.debug(
+ "System configuration directory is already initialized."
+ " Attempting to read bpod_path from configuration file"
+ )
+ # System has already been initialized
+ try:
+ bpod_path = startup.get_bpod_dir_from_system()
+ except ValidationError as e:
+ logger.error(
+ "Configuration file at %s failed to validate!",
+ SYSTEM_CONFIG_FILE,
+ exc_info=e,
+ )
+ logger.error(
+ "Unable to read Bpod directory path from existing system configuration "
+ "file! Exiting..."
+ )
+ return
- # Populate this machine's folders with the default config and calibration files.
- default_setup.copy_default_files(bpod_directory, "EMU")
+ if bpod_path is None:
+ # This is the first time initializing the system; override default path?
+ override_directory = cli_io.yes_no_prompt(
+ f"Bpod has not been initialized on this system! "
+ f"Would you like to override the default path {DEFAULT_BPOD_PATH}?"
+ )
+ if override_directory:
+ logger.debug("User is going to override the path!")
+ bpod_path = cli_io.prompt_for_path(
+ "Please enter the path to create the Bpod directory"
+ )
+ else:
+ bpod_path = DEFAULT_BPOD_PATH
- inital_system_config = utils.init_system_configuration(
- bpod_directory
- )
+ logger.info("Bpod path set to: %s", bpod_path)
+
+ ## Verify Bpod Folder Structure ##
+
+ # Instantiate SystemPaths object to generate subdirectories
+ system_paths = SystemPaths(base_dir=bpod_path)
+ bpod_dir_verified = utils.verify_bpod_directory(system_paths)
+
+ # Verification Failed
+ if not bpod_dir_verified:
+ logger.info(
+ "The Bpod directory at %s failed to verify!"
+ " This could be due to a partially initialized folder structure or "
+ "improper file path!",
+ bpod_path,
+ )
+ reinitialize = cli_io.yes_no_prompt(
+ f"Would you like to (re)initialize {bpod_path} as the base"
+ f" Bpod directory?"
+ )
+
+ if reinitialize or not system_initialized:
+ logging.info("Initializing Bpod directory at %s", bpod_path)
+ bpod_path = startup.create_default_directories(bpod_path)
+ bpod_dir_verified = True
- result = utils.save_system_configuration(inital_system_config)
+ copy_default = cli_io.yes_no_prompt(
+ f"Would you like to copy the default protocols and calibration files to {bpod_path}"
+ )
+ if copy_default:
+ startup.copy_default_files(bpod_path)
+
+ if bpod_dir_verified:
+ logging.debug("System paths at %s verified", bpod_path)
+ else:
+ logger.error("No valid Bpod directory! Shutting down.")
+ return
+
+
+ inital_system_config = utils.init_system_configuration(bpod_path)
+ user_config_path = utils.save_system_configuration(inital_system_config)
+ system_config_path = utils.save_system_configuration(
+ inital_system_config,
+ save_dir_override=SYSTEM_CONFIG_DIR
+ )
if __name__ == "__main__":
main()
diff --git a/bpod_rig/config/base.py b/bpod_rig/config/base.py
index 2c54180..abce830 100644
--- a/bpod_rig/config/base.py
+++ b/bpod_rig/config/base.py
@@ -1,6 +1,7 @@
"""Base classes for configuration classes."""
import datetime
+import logging
from typing import Annotated, Any, Optional
from pydantic import (
@@ -12,6 +13,7 @@
model_validator,
)
+logger = logging.getLogger(__name__)
class SettingsMetadata(BaseModel):
model_config = ConfigDict()
@@ -37,7 +39,7 @@ class SettingsMetadata(BaseModel):
str,
Field(
min_length=1,
- max_length=128,
+ max_length=128,
title="Username of settings creator",
description="Username of the creator of this settings model.",
),
@@ -100,6 +102,27 @@ def forward_username(cls, data: Any) -> Any:
return data
+ def update_modification_time(self) -> bool:
+ """
+ Update metadata modified_datetime field.
+
+ Parameters
+ ----------
+ None
+
+ Returns
+ -------
+ bool
+ If successful, return True, else return False.
+ """
+ try:
+ self.metadata.modified_datetime = datetime.datetime.now()
+ except Exception as e:
+ logger.error("Error setting save_time field for %s!", self, exc_info=e)
+ return False
+ return True
+
+
class ModuleBase(ModelWithMetadata):
name: Annotated[
str,
diff --git a/bpod_rig/config/system_settings.py b/bpod_rig/config/system_settings.py
index dfe0406..977c2e8 100644
--- a/bpod_rig/config/system_settings.py
+++ b/bpod_rig/config/system_settings.py
@@ -9,11 +9,10 @@
from bpod_rig.config.base import ModelWithMetadata
from bpod_rig.config.bpod_settings import BpodPaths
-
-DEFAULT_PROTOCOL_DIR_NAME = "Protocols"
-DEFAULT_DATA_DIR_NAME = "Data"
-DEFAULT_CONFIG_DIR_NAME = "Config"
-DEFAULT_LOG_DIR_NAME = "Logs"
+from bpod_rig.defaults import (
+ DEFAULT_PROTOCOL_DIR_NAME, DEFAULT_DATA_DIR_NAME,
+ DEFAULT_CONFIG_DIR_NAME
+)
logger = logging.getLogger(__name__)
@@ -170,28 +169,34 @@ class SystemSettings(ModelWithMetadata):
),
] = None
- def set_modification_time(self, date_time: datetime.datetime) -> bool:
- """
- Update all metadata save_time fields.
- Parameters
- ----------
- date_time : datetime.datetime
- Date and time to update metadata save_time fields to.
+ def update_modification_time(self) -> bool:
+ """
+ Override update_modification_time to also update the modified_datetime metadata
+ field of SystemSettings subfields
Returns
-------
- bool
- If successful, return True, else return False.
+ bool:
+ True if all times were updated, False otherwise
"""
- try:
- self.metadata.modified_datetime = date_time
- self.paths.metadata.modified_datetime = date_time
- if self.bpod_dirs:
- for bpod_dir in self.bpod_dirs:
- bpod_dir.metadata.modified_datetime = date_time
- except Exception as e:
- logger.error("Error setting save_time fields!", exc_info=e)
+
+ all_success = True
+
+ all_success &= super().update_modification_time()
+ # Update the SystemSettings save time
+
+ if self.bpod_dirs:
+ for bpod_dir in self.bpod_dirs:
+ all_success &= bpod_dir.update_modification_time()
+ # Update the save time for each bpod_dir
+
+ if self.paths:
+ all_success &= self.paths.update_modification_time()
+ # Update the save time for the system paths
+
+ if not all_success:
return False
return True
+
diff --git a/bpod_rig/config/utils.py b/bpod_rig/config/utils.py
index 924463e..76c99f3 100644
--- a/bpod_rig/config/utils.py
+++ b/bpod_rig/config/utils.py
@@ -5,6 +5,7 @@
from pydantic_core import from_json
from bpod_rig.config.system_settings import SystemPaths, SystemSettings
+from bpod_rig.defaults import SYSTEM_CONFIG_DIR
from bpod_rig.IO import json_handler
logger = logging.getLogger(__name__)
@@ -18,6 +19,57 @@ def init_system_configuration(bpod_dir: Path) -> SystemSettings:
system_settings = SystemSettings(paths=system_paths)
return system_settings
+def verify_bpod_directory(system_paths: SystemPaths) -> bool:
+
+ dir_verified = True
+ sp_fields = SystemPaths.model_fields
+ sp_fields = [field for field in sp_fields if field != "metadata"]
+ sp_as_dict = system_paths.model_dump()
+
+ for field in sp_fields:
+ field_path = sp_as_dict[field]
+ if field_path is None:
+ continue
+ # Skip None values that are not implemented yet
+ if not field_path.exists():
+ logger.error("Bpod subdirectory %s does not exist", field_path)
+ dir_verified = False
+
+ return dir_verified
+
+
+def save_system_paths(
+ system_paths: SystemPaths, save_dir_override: Path | None
+) -> None:
+ """
+ Save the system paths to the system configuration directory as json-formatted text
+
+ Simultaneously will update the save_time field
+
+ Parameters
+ ----------
+ system_paths : SystemPaths
+ SystemPaths instance to serialize and write to disk
+ save_dir_override : Path | None
+ Optional Path to override the default save directory. Default SYSTEM_CONFIG_DIR
+ used if not provided
+
+ Returns
+ -------
+ None
+ """
+
+ logger.debug("Saving system paths as JSON!")
+ system_paths.update_modification_time()
+
+ if save_dir_override is not None:
+ save_dir = save_dir_override
+ else:
+ save_dir = SYSTEM_CONFIG_DIR
+
+ system_paths_json = system_paths.model_dump_json(indent=2)
+ json_handler.write_json(system_paths_json, save_dir, "paths")
+
def save_system_configuration(
system_settings: SystemSettings, save_dir_override: Path | None = None
@@ -25,7 +77,7 @@ def save_system_configuration(
"""
Save system_configuration instance to disk as json-formatted text.
- Simultaneously will update the modified_datetime field of the models to datetime.now()
+ Simultaneously will update the save_time field
Parameters
----------
@@ -41,8 +93,7 @@ def save_system_configuration(
Path to the saved file is returned
"""
logger.debug("Saving system configuration as JSON!")
- modified_datetime = datetime.datetime.now()
- system_settings.set_modification_time(modified_datetime)
+ system_settings.update_modification_time()
if save_dir_override is None:
if system_settings.paths.base_config_dir is None:
diff --git a/bpod_rig/defaults.py b/bpod_rig/defaults.py
new file mode 100644
index 0000000..2603074
--- /dev/null
+++ b/bpod_rig/defaults.py
@@ -0,0 +1,16 @@
+"""Module to hold a bunch of default values that are references in multiple places"""
+import platformdirs
+
+# Default Names
+DEFAULT_DIR_NAME = "Bpod"
+DEFAULT_SUBDIRS = ["Config", "Calibration", "Protocols", "Data", "Logs"]
+DEFAULT_PROTOCOL_DIR_NAME = "Protocols"
+DEFAULT_DATA_DIR_NAME = "Data"
+DEFAULT_CONFIG_DIR_NAME = "Config"
+DEFAULT_LOG_DIR_NAME = "Logs"
+
+# Defaults or unchanging paths
+SYSTEM_CONFIG_DIR = platformdirs.user_config_path(DEFAULT_DIR_NAME)
+SYSTEM_CONFIG_FILE = SYSTEM_CONFIG_DIR / "config.json"
+DEFAULT_BPOD_PATH = platformdirs.user_documents_path() / DEFAULT_DIR_NAME
+
diff --git a/pyproject.toml b/pyproject.toml
index f240401..cae345c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -13,15 +13,19 @@ authors = [
{ name = "Austin Pauley", email = "pauley@psy.fsu.edu" },
{ name = "Florian Rau", email = "bimac@users.noreply.github.com" },
{ name = "Steven Smith", email = "steven@stevenlsmith.com" },
+ { name = "George Stuyt", email = "eorge.stuyt@gmail.com"}
]
requires-python = ">=3.10"
dependencies = [
- "bpod-core",
- #"bpod-gui"
- "bpod-core>=0.1.0a2",
+ "click>=8.3.1",
+ "platformdirs>=4.5.1",
"pydantic==2.11.7",
]
+[dependency-groups]
+dev = [{ include-group = "test" }]
+test = ["pytest>=8.4.2", "pytest-cov>=7.0.0"]
+
[project.urls]
Changelog = "https://github.com/sanworks/bpod-rig/blob/main/CHANGELOG.md"
# Documentation = "https://int-brain-lab.github.io/bpod-core/"
@@ -29,12 +33,14 @@ Homepage = "https://github.com/sanworks/bpod-rig"
Issues = "https://github.com/sanworks/bpod-rig/issues"
Repository = "https://github.com/sanworks/bpod-rig.git"
-
[tool.setuptools.packages]
find = { where = [""], include = ["*", "examples"] }
# We want to include the examples folder in the wheel incase its needed
# We need to explicitly include examples as it is a reserved name
+[project.scripts]
+bpod = "bpod_rig.__main__:main"
+
[tool.ruff]
# Exclude a variety of commonly ignored directories.
@@ -152,7 +158,3 @@ docstring-code-format = false
# This only has an effect when the `docstring-code-format` setting is
# enabled.
docstring-code-line-length = "dynamic"
-
-[dependency-groups]
-dev = [{ include-group = "test" }]
-test = ["pytest>=8.4.2", "pytest-cov>=7.0.0"]
diff --git a/tests/bpod_rig/IO/test_default_setup.py b/tests/bpod_rig/IO/test_startup.py
similarity index 72%
rename from tests/bpod_rig/IO/test_default_setup.py
rename to tests/bpod_rig/IO/test_startup.py
index 43666a7..0450705 100644
--- a/tests/bpod_rig/IO/test_default_setup.py
+++ b/tests/bpod_rig/IO/test_startup.py
@@ -4,11 +4,7 @@
import pytest
-from bpod_rig.IO import default_setup
-
-
-class TestCreateDefaultDirectories:
- pass
+from bpod_rig.IO import startup
class TestCreateDefaultDirectories:
@@ -18,12 +14,11 @@ def setup_and_teardown(self):
self.temp_dir = tempfile.TemporaryDirectory()
self.temp_path = Path(self.temp_dir.name)
self.bpod_path = self.temp_path / "Bpod"
- self.machine_id = "COM3"
yield # test runs here
self.temp_dir.cleanup()
def test_folder_creation(self):
- default_setup.create_default_directories("EMU", self.bpod_path)
+ startup.create_default_directories(self.bpod_path)
assert self.bpod_path.exists()
diff --git a/tests/bpod_rig/config/test_models.py b/tests/bpod_rig/config/test_models.py
index abcc277..bf16c9e 100644
--- a/tests/bpod_rig/config/test_models.py
+++ b/tests/bpod_rig/config/test_models.py
@@ -4,7 +4,7 @@
import pytest
from pydantic import ValidationError
-from bpod_rig.config.base import SettingsMetadata
+from bpod_rig.config.base import SettingsMetadata, ModelWithMetadata
from bpod_rig.config.system_settings import SystemPaths
from bpod_rig.config.bpod_settings import BpodPaths
@@ -81,8 +81,14 @@ def test_pass_username(self, paths):
sp = SystemPaths(base_dir=paths["bpod_dir"], username="valid_username")
+ # Does username get forwarded properly to the SettingsMatadata object
assert sp.metadata.username == "valid_username"
+ # Does the SettingsMetadata object get properly forwarded
+ md = SettingsMetadata()
+ sp2 = SystemPaths(base_dir=paths["bpod_dir"], metadata=md, username="beepbop")
+ assert sp2.metadata.username != "beepbop"
+
def test_not_paths(self):
"""Tests that non-path inputs for directories raise validation errors."""
with pytest.raises(ValidationError):
diff --git a/uv.lock b/uv.lock
index 4b20f38..806e115 100644
--- a/uv.lock
+++ b/uv.lock
@@ -16,30 +16,13 @@ wheels = [
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]
-[[package]]
-name = "bpod-core"
-version = "0.1.0a2"
-source = { registry = "https://pypi.org/simple" }
-dependencies = [
- { name = "annotated-types" },
- { name = "graphviz" },
- { name = "numpy", version = "2.2.6", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.11'" },
- { name = "numpy", version = "2.3.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.11'" },
- { name = "pandas" },
- { name = "pydantic" },
- { name = "pyserial" },
-]
-sdist = { url = "https://files.pythonhosted.org/packages/12/64/600b2193e6d7c6d859e337b15b96697650b447a56b22bae81c5fac3d177d/bpod_core-0.1.0a2.tar.gz", hash = "sha256:e17b57d7404adecedc638e5dc449e26170549c22eaa1a3a6ffd622f63bca5657", size = 19352, upload-time = "2025-05-08T00:58:10.087Z" }
-wheels = [
- { url = "https://files.pythonhosted.org/packages/54/4d/565baec6af516a5caebb8598e023f1f235a3032792ebf0adc1b927b0468e/bpod_core-0.1.0a2-py3-none-any.whl", hash = "sha256:f8ff6d125eceec2d3b70636797250aac055e91b6f3497455a32437473bf9530a", size = 13137, upload-time = "2025-05-08T00:58:09.257Z" },
-]
-
[[package]]
name = "bpod-rig"
version = "0.0.2"
source = { editable = "." }
dependencies = [
- { name = "bpod-core" },
+ { name = "click" },
+ { name = "platformdirs" },
{ name = "pydantic" },
]
@@ -55,8 +38,8 @@ test = [
[package.metadata]
requires-dist = [
- { name = "bpod-core" },
- { name = "bpod-core", specifier = ">=0.1.0a2" },
+ { name = "click", specifier = ">=8.3.1" },
+ { name = "platformdirs", specifier = ">=4.5.1" },
{ name = "pydantic", specifier = "==2.11.7" },
]
@@ -70,6 +53,18 @@ test = [
{ name = "pytest-cov", specifier = ">=7.0.0" },
]
+[[package]]
+name = "click"
+version = "8.3.1"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+ { name = "colorama", marker = "sys_platform == 'win32'" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/3d/fa/656b739db8587d7b5dfa22e22ed02566950fbfbcdc20311993483657a5c0/click-8.3.1.tar.gz", hash = "sha256:12ff4785d337a1bb490bb7e9c2b1ee5da3112e94a8622f26a6c77f5d2fc6842a", size = 295065, upload-time = "2025-11-15T20:45:42.706Z" }
+wheels = [
+ { url = "https://files.pythonhosted.org/packages/98/78/01c019cdb5d6498122777c1a43056ebb3ebfeef2076d9d026bfe15583b2b/click-8.3.1-py3-none-any.whl", hash = "sha256:981153a64e25f12d547d3426c367a4857371575ee7ad18df2a6183ab0545b2a6", size = 108274, upload-time = "2025-11-15T20:45:41.139Z" },
+]
+
[[package]]
name = "colorama"
version = "0.4.6"
@@ -195,15 +190,6 @@ wheels = [
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-[[package]]
-name = "graphviz"
-version = "0.21"
-source = { registry = "https://pypi.org/simple" }
-sdist = { url = "https://files.pythonhosted.org/packages/f8/b3/3ac91e9be6b761a4b30d66ff165e54439dcd48b83f4e20d644867215f6ca/graphviz-0.21.tar.gz", hash = "sha256:20743e7183be82aaaa8ad6c93f8893c923bd6658a04c32ee115edb3c8a835f78", size = 200434, upload-time = "2025-06-15T09:35:05.824Z" }
-wheels = [
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-
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name = "iniconfig"
version = "2.1.0"
@@ -213,133 +199,6 @@ wheels = [
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-[[package]]
-name = "numpy"
-version = "2.2.6"
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-resolution-markers = [
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