| Tissue | Antibody | UCSC Accession |
|---|---|---|
| Hindbrain | H3K27ac | ENCFF203QTV |
| Hindbrain | H3K4me1 | ENCFF542GAS |
| Heart | H3K27ac | ENCFF954URD |
| Heart | H3K4me1 | ENCFF737FNO |
|
We downloaded the CpG islands from here setting "group:All Tracks" and
- "track:CpG Islands" and "table:cpgIslandExt" (mm9.cpgIslandExt.bed) or
- "track:Unmasked CpG" and "table:cpgIslandExtUnmasked" (mm9.cpgIslandExtUnmasked.bed)
see difference between cpgIslandExt and cpgIslandExtUnmasked by clicking on describe table schema then downloaded the file locally.
wc -l mm9.cpgIslandExt.bed # 16026
wc -l mm9.cpgIslandExtUnmasked.bed # 23686