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MSMS is provided with PyVOL for ease of use for academic users. If MSMS is available on the system path, it is automatically detected. Common locations (including the bundled version for academic users) can be searched using the GUI Settings tab. Select the appropriate location to search and then click Check Path. If a viable MSMS executable is found at that location, it is displayed. In this case the Change MSMS Path button allows the default location for MSMS to be set. This stores the MSMS path under the PyMOL variable pyvol_msms_exe which can be manually accessed and edited via PyMOL’s settings manager.
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