diff --git a/scilpy/tractograms/tractogram_operations.py b/scilpy/tractograms/tractogram_operations.py
index 60b67c394..ef71b29be 100644
--- a/scilpy/tractograms/tractogram_operations.py
+++ b/scilpy/tractograms/tractogram_operations.py
@@ -154,6 +154,10 @@ def flip_sft(sft, flip_axes):
     -------
     flipped_sft: StatefulTractogram
     """
+    old_space = sft.space
+    old_origin = sft.origin
+    sft.to_vox()
+    sft.to_corner()
     if len(flip_axes) == 0:
         # Could return sft. But creating new SFT (or deep copy).
         flipped_streamlines = sft.streamlines
@@ -174,6 +178,11 @@ def flip_sft(sft, flip_axes):
         data_per_point=sft.data_per_point,
         data_per_streamline=sft.data_per_streamline)
 
+    sft.to_space(old_space)
+    sft.to_origin(old_origin)
+    new_sft.to_space(old_space)
+    new_sft.to_origin(old_origin)
+
     return new_sft