diff --git a/scilpy/io/fetcher.py b/scilpy/io/fetcher.py index dd61ae211..6876d6e6e 100644 --- a/scilpy/io/fetcher.py +++ b/scilpy/io/fetcher.py @@ -60,7 +60,7 @@ def get_testing_files_dict(): "processing.zip": "eece5cdbf437b8e4b5cb89c797872e28", "surface_vtk_fib.zip": "241f3afd6344c967d7176b43e4a99a41", "tractograms.zip": "1eb29085db974b5e58d32b13eb76fbe6", - "mrds.zip": "aefbeb6fae58d120538afcad5d90140c" + "mrds.zip": "5abe6092400e11e9bb2423e2c387e774" } diff --git a/scripts/scil_mrds_select_number_of_tensors.py b/scripts/scil_mrds_select_number_of_tensors.py index fcfb005dd..e2d9e98d7 100755 --- a/scripts/scil_mrds_select_number_of_tensors.py +++ b/scripts/scil_mrds_select_number_of_tensors.py @@ -16,12 +16,12 @@ mdtmrds: information available soon (not part of scilpy). Input: - Inputs are a list of 5 files for each MRDS solution (V1, V2, V3). - - Signal fraction of each tensor ([in_prefix]_V[1,2,3]_signal_fraction.nii.gz) - - Eigenvalues ($in_prefix]_V[1,2,3]_evals.nii.gz) - - Isotropic ([in_prefix]_V[1,2,3]_isotropic.nii.gz) - - Number of tensors ([in_prefix]_V[1,2,3]_num_tensors.nii.gz) - - Eigenvectors ([in_prefix]_V[1,2,3]_evecs.nii.gz) + Inputs are a list of 5 files for each MRDS solution (D1, D2, D3). + - Signal fraction of each tensor ([in_prefix]_D[1,2,3]_signal_fraction.nii.gz) + - Eigenvalues ($in_prefix]_D[1,2,3]_evals.nii.gz) + - Isotropic ([in_prefix]_D[1,2,3]_isotropic.nii.gz) + - Number of tensors ([in_prefix]_D[1,2,3]_num_tensors.nii.gz) + - Eigenvectors ([in_prefix]_D[1,2,3]_evecs.nii.gz) Example: @@ -71,11 +71,11 @@ def main(): mrds_files = [] for i in range(1, 4): - mrds_files.append([args.in_prefix + '_V{}_signal_fraction.nii.gz'.format(i), - args.in_prefix + '_V{}_evals.nii.gz'.format(i), - args.in_prefix + '_V{}_isotropic.nii.gz'.format(i), - args.in_prefix + '_V{}_num_tensors.nii.gz'.format(i), - args.in_prefix + '_V{}_evecs.nii.gz'.format(i)]) + mrds_files.append([args.in_prefix + '_D{}_signal_fraction.nii.gz'.format(i), + args.in_prefix + '_D{}_evals.nii.gz'.format(i), + args.in_prefix + '_D{}_isotropic.nii.gz'.format(i), + args.in_prefix + '_D{}_num_tensors.nii.gz'.format(i), + args.in_prefix + '_D{}_evecs.nii.gz'.format(i)]) assert_inputs_exist(parser, [args.in_volume] + [x for xs in mrds_files for x in xs], optional=args.mask)