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<!DOCTYPE html>
<html lang="en" data-content_root="./">
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Index — SCoT</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="_static/classic.css?v=514cf933" />
<link rel="stylesheet" type="text/css" href="_static/plot_directive.css" />
<script src="_static/documentation_options.js?v=2b62b5d0"></script>
<script src="_static/doctools.js?v=888ff710"></script>
<script src="_static/sphinx_highlight.js?v=dc90522c"></script>
<link rel="index" title="Index" href="#" />
<link rel="search" title="Search" href="search.html" />
</head><body>
<div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
<a href="index.html"><img src="_static/logo.png" border="0" alt="py4sci"/></a>
</div>
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
<li class="right" style="margin-right: 10px">
<a href="#" title="General Index"
accesskey="I">index</a></li>
<li class="right" >
<a href="py-modindex.html" title="Python Module Index"
>modules</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">SCoT</a> »</li>
<li class="nav-item nav-item-this"><a href="">Index</a></li>
</ul>
</div>
<div class="document">
<div class="documentwrapper">
<div class="body" role="main">
<h1 id="index">Index</h1>
<div class="genindex-jumpbox">
<a href="#A"><strong>A</strong></a>
| <a href="#B"><strong>B</strong></a>
| <a href="#C"><strong>C</strong></a>
| <a href="#D"><strong>D</strong></a>
| <a href="#E"><strong>E</strong></a>
| <a href="#F"><strong>F</strong></a>
| <a href="#G"><strong>G</strong></a>
| <a href="#H"><strong>H</strong></a>
| <a href="#I"><strong>I</strong></a>
| <a href="#J"><strong>J</strong></a>
| <a href="#K"><strong>K</strong></a>
| <a href="#L"><strong>L</strong></a>
| <a href="#M"><strong>M</strong></a>
| <a href="#N"><strong>N</strong></a>
| <a href="#O"><strong>O</strong></a>
| <a href="#P"><strong>P</strong></a>
| <a href="#R"><strong>R</strong></a>
| <a href="#S"><strong>S</strong></a>
| <a href="#T"><strong>T</strong></a>
| <a href="#V"><strong>V</strong></a>
| <a href="#W"><strong>W</strong></a>
| <a href="#X"><strong>X</strong></a>
</div>
<h2 id="A">A</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.Connectivity.A">A() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.A">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.Connectivity.absS">absS() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.absS">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.datatools.acm">acm() (in module scot.datatools)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.backendmanager.BackendManager.activate">activate() (scot.backendmanager.BackendManager method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Circle.angle">angle() (scot.eegtopo.geo_spherical.Circle method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.projections.array_project_radial_to2d">array_project_radial_to2d() (in module scot.eegtopo.projections)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.projections.array_project_radial_to3d">array_project_radial_to3d() (in module scot.eegtopo.projections)</a>
</li>
<li><a href="api/scot/scot.tests.html#scot.tests.test_connectivity.assert_zerostructure">assert_zerostructure() (in module scot.tests.test_connectivity)</a>
</li>
<li><a href="api/scot/scot.html#scot.datatools.atleast_3d">atleast_3d() (in module scot.datatools)</a>
</li>
</ul></td>
</tr></table>
<h2 id="B">B</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.backendmanager.BackendManager">BackendManager (class in scot.backendmanager)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.connectivity_statistics.bootstrap_connectivity">bootstrap_connectivity() (in module scot.connectivity_statistics)</a>
</li>
</ul></td>
</tr></table>
<h2 id="C">C</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.topoplot.Topoplot.calc_g">calc_g() (scot.eegtopo.topoplot.Topoplot method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.topoplot.Topoplot.calc_gmap">calc_gmap() (scot.eegtopo.topoplot.Topoplot method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.topoplot.Topoplot.calc_legendre_factors">calc_legendre_factors() (scot.eegtopo.topoplot.Topoplot static method)</a>
</li>
<li><a href="api/scot/scot.html#scot.utils.cartesian">cartesian() (in module scot.utils)</a>
</li>
<li><a href="api/scot/scot.html#scot.datatools.cat_trials">cat_trials() (in module scot.datatools)</a>
</li>
<li><a href="api/scot/scot.html#scot.utils.check_random_state">check_random_state() (in module scot.utils)</a>
</li>
<li><a href="api/scot/scot.html#scot.Connectivity.Cinv">Cinv() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.Cinv">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Circle">Circle (class in scot.eegtopo.geo_spherical)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Construct.circle_intersect_circle">circle_intersect_circle() (scot.eegtopo.geo_spherical.Construct static method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_euclidean.Vector.close">close() (scot.eegtopo.geo_euclidean.Vector method)</a>
</li>
<li><a href="api/scot/scot.html#scot.Connectivity.COH">COH() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.COH">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.tests.html#scot.tests.test_var_sklearn.CommonTests">CommonTests (class in scot.tests.test_var_sklearn)</a>
</li>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.compare_conditions">compare_conditions() (scot.ooapi.Workspace method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.Workspace.compare_conditions">(scot.Workspace method)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.Connectivity">Connectivity (class in scot)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity">(class in scot.connectivity)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.connectivity.connectivity">connectivity() (in module scot.connectivity)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Construct">Construct (class in scot.eegtopo.geo_spherical)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.eegpos3d.construct_1020_easycap">construct_1020_easycap() (in module scot.eegtopo.eegpos3d)</a>
</li>
<li><a href="api/scot/scot.html#scot.datasets.convert">convert() (in module scot.datasets)</a>
</li>
<li><a href="api/scot/scot.html#scot.connectivity_statistics.convert_output_">convert_output_() (in module scot.connectivity_statistics)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_euclidean.Vector.copy">copy() (scot.eegtopo.geo_euclidean.Vector method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.varbase.VARBase.copy">(scot.varbase.VARBase method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.topoplot.Topoplot.create_map">create_map() (scot.eegtopo.topoplot.Topoplot method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_euclidean.Vector.cross">cross() (scot.eegtopo.geo_euclidean.Vector method)</a>
</li>
<li><a href="api/scot/scot.html#scot.csp.csp">csp() (in module scot.csp)</a>
</li>
<li><a href="api/scot/scot.html#scot.varica.cspvarica">cspvarica() (in module scot.varica)</a>
</li>
<li><a href="api/scot/scot.html#scot.plotting.current_axis">current_axis() (in module scot.plotting)</a>
</li>
<li><a href="api/scot/scot.html#scot.datatools.cut_segments">cut_segments() (in module scot.datatools)</a>
</li>
<li><a href="api/scot/scot.html#scot.utils.cuthill_mckee">cuthill_mckee() (in module scot.utils)</a>
</li>
</ul></td>
</tr></table>
<h2 id="D">D</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.Connectivity.dDTF">dDTF() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.dDTF">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.varbase.Defaults">Defaults (class in scot.varbase)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Circle.distance">distance() (scot.eegtopo.geo_spherical.Circle method)</a>
<ul>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Line.distance">(scot.eegtopo.geo_spherical.Line method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Point.distance">(scot.eegtopo.geo_spherical.Point method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Point.distances">distances() (scot.eegtopo.geo_spherical.Point method)</a>
</li>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.do_cspvarica">do_cspvarica() (scot.ooapi.Workspace method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.Workspace.do_cspvarica">(scot.Workspace method)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.do_ica">do_ica() (scot.ooapi.Workspace method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.Workspace.do_ica">(scot.Workspace method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.do_mvarica">do_mvarica() (scot.ooapi.Workspace method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.Workspace.do_mvarica">(scot.Workspace method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_euclidean.Vector.dot">dot() (scot.eegtopo.geo_euclidean.Vector method)</a>
</li>
<li><a href="api/scot/scot.html#scot.datatools.dot_special">dot_special() (in module scot.datatools)</a>
</li>
<li><a href="api/scot/scot.html#scot.Connectivity.DTF">DTF() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.DTF">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="E">E</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="glossary.html#term-EEG"><strong>EEG</strong></a>
</li>
</ul></td>
</tr></table>
<h2 id="F">F</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.tests.html#scot.tests.test_parallel.f">f() (in module scot.tests.test_parallel)</a>
</li>
<li><a href="api/scot/scot.html#scot.datasets.fetch">fetch() (in module scot.datasets)</a>
</li>
<li><a href="api/scot/scot.html#scot.Connectivity.ffDTF">ffDTF() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.ffDTF">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.Connectivity.ffPDC">ffPDC() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.ffPDC">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.var.VAR.fit">fit() (scot.var.VAR method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.varbase.VARBase.fit">(scot.varbase.VARBase method)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.fit_var">fit_var() (scot.ooapi.Workspace method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.Workspace.fit_var">(scot.Workspace method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.varbase.VARBase.from_yw">from_yw() (scot.varbase.VARBase method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_euclidean.Vector.fromiterable">fromiterable() (scot.eegtopo.geo_euclidean.Vector class method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_euclidean.Vector.fromvector">fromvector() (scot.eegtopo.geo_euclidean.Vector class method)</a>
<ul>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Point.fromvector">(scot.eegtopo.geo_spherical.Point class method)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="G">G</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.tests.html#scot.tests.test_parallel.g">g() (in module scot.tests.test_parallel)</a>
</li>
<li><a href="api/scot/scot.html#scot.Connectivity.G">G() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.G">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.Connectivity.GDTF">GDTF() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.GDTF">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.backend_builtin.generate">generate() (in module scot.backend_builtin)</a>
<ul>
<li><a href="api/scot/scot.html#scot.backend_mne.generate">(in module scot.backend_mne)</a>
</li>
<li><a href="api/scot/scot.html#scot.backend_sklearn.generate">(in module scot.backend_sklearn)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.tests.html#scot.tests.generate_testdata.generate_covsig">generate_covsig() (in module scot.tests.generate_testdata)</a>
</li>
<li><a href="api/scot/scot.tests.html#scot.tests.test_statistics.TestFunctions.generate_data">generate_data() (scot.tests.test_statistics.TestFunctions static method)</a>
<ul>
<li><a href="api/scot/scot.tests.html#scot.tests.test_var.TestVAR.generate_data">(scot.tests.test_var.TestVAR method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.backendmanager.BackendManager.get_backend">get_backend() (scot.backendmanager.BackendManager method)</a>
</li>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.get_bootstrap_connectivity">get_bootstrap_connectivity() (scot.ooapi.Workspace method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.Workspace.get_bootstrap_connectivity">(scot.Workspace method)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.get_connectivity">get_connectivity() (scot.ooapi.Workspace method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.Workspace.get_connectivity">(scot.Workspace method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.topoplot.Topoplot.get_map">get_map() (scot.eegtopo.topoplot.Topoplot method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Circle.get_point">get_point() (scot.eegtopo.geo_spherical.Circle method)</a>
<ul>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Line.get_point">(scot.eegtopo.geo_spherical.Line method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Circle.get_radius">get_radius() (scot.eegtopo.geo_spherical.Circle method)</a>
</li>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.get_surrogate_connectivity">get_surrogate_connectivity() (scot.ooapi.Workspace method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.Workspace.get_surrogate_connectivity">(scot.Workspace method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.get_tf_connectivity">get_tf_connectivity() (scot.ooapi.Workspace method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.Workspace.get_tf_connectivity">(scot.Workspace method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.Connectivity.GPDC">GPDC() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.GPDC">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="H">H</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.tests.html#scot.tests.test_parallel.h">h() (in module scot.tests.test_parallel)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.Connectivity.H">H() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.H">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="I">I</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="glossary.html#term-ICA"><strong>ICA</strong></a>
</li>
<li><a href="api/scot/scot.external.html#scot.external.infomax_.logger.info">info() (scot.external.infomax_.logger static method)</a>
</li>
<li><a href="api/scot/scot.external.html#scot.external.infomax_.infomax">infomax() (in module scot.external.infomax_)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.eegpos3d.intersection">intersection() (in module scot.eegtopo.eegpos3d)</a>
</li>
<li><a href="api/scot/scot.html#scot.varbase.VARBase.is_stable">is_stable() (scot.varbase.VARBase method)</a>
</li>
<li><a href="api/scot/scot.html#scot.backendmanager.BackendManager.items">items() (scot.backendmanager.BackendManager method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="J">J</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.connectivity_statistics.jackknife_connectivity">jackknife_connectivity() (in module scot.connectivity_statistics)</a>
</li>
</ul></td>
</tr></table>
<h2 id="K">K</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.keep_sources">keep_sources() (scot.ooapi.Workspace method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.Workspace.keep_sources">(scot.Workspace method)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.tools.Struct.keys">keys() (scot.eegtopo.tools.Struct method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="L">L</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Line">Line (class in scot.eegtopo.geo_spherical)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Construct.line_intersect_circle">line_intersect_circle() (scot.eegtopo.geo_spherical.Construct static method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Construct.line_intersect_line">line_intersect_line() (scot.eegtopo.geo_spherical.Construct static method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Point.list">list (scot.eegtopo.geo_spherical.Point property)</a>
</li>
<li><a href="api/scot/scot.html#scot.config.load_configuration">load_configuration() (in module scot.config)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.matfiles.loadmat">loadmat() (in module scot.matfiles)</a>
</li>
<li><a href="api/scot/scot.html#scot.Connectivity.logG">logG() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.logG">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.external.html#scot.external.infomax_.logger">logger (class in scot.external.infomax_)</a>
</li>
<li><a href="api/scot/scot.html#scot.Connectivity.logS">logS() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.logS">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="M">M</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.xvschema.make_nfold">make_nfold() (in module scot.xvschema)</a>
</li>
<li><a href="api/scot/scot.html#scot.plotting.MaxNLocator">MaxNLocator() (in module scot.plotting)</a>
</li>
<li><a href="api/scot/scot.html#scot.datasets.MD5MismatchError">MD5MismatchError</a>
</li>
<li><a href="api/scot/scot.html#scot.utils.memoize">memoize (class in scot.utils)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Construct.midpoint">midpoint() (scot.eegtopo.geo_spherical.Construct static method)</a>
</li>
<li>
module
<ul>
<li><a href="api/scot/scot.html#module-scot">scot</a>
</li>
<li><a href="api/scot/scot.html#module-scot.backend_builtin">scot.backend_builtin</a>
</li>
<li><a href="api/scot/scot.html#module-scot.backend_mne">scot.backend_mne</a>
</li>
<li><a href="api/scot/scot.html#module-scot.backend_sklearn">scot.backend_sklearn</a>
</li>
<li><a href="api/scot/scot.html#module-scot.backendmanager">scot.backendmanager</a>
</li>
<li><a href="api/scot/scot.html#module-scot.config">scot.config</a>
</li>
<li><a href="api/scot/scot.html#module-scot.connectivity">scot.connectivity</a>
</li>
<li><a href="api/scot/scot.html#module-scot.connectivity_statistics">scot.connectivity_statistics</a>
</li>
<li><a href="api/scot/scot.html#module-scot.csp">scot.csp</a>
</li>
<li><a href="api/scot/scot.html#module-scot.datasets">scot.datasets</a>
</li>
<li><a href="api/scot/scot.html#module-scot.datatools">scot.datatools</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo">scot.eegtopo</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo.eegpos3d">scot.eegtopo.eegpos3d</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo.geo_euclidean">scot.eegtopo.geo_euclidean</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo.geo_spherical">scot.eegtopo.geo_spherical</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo.projections">scot.eegtopo.projections</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo.tools">scot.eegtopo.tools</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo.topoplot">scot.eegtopo.topoplot</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo.warp_layout">scot.eegtopo.warp_layout</a>
</li>
<li><a href="api/scot/scot.external.html#module-scot.external">scot.external</a>
</li>
<li><a href="api/scot/scot.external.html#module-scot.external.infomax_">scot.external.infomax_</a>
</li>
<li><a href="api/scot/scot.html#module-scot.matfiles">scot.matfiles</a>
</li>
<li><a href="api/scot/scot.html#module-scot.ooapi">scot.ooapi</a>
</li>
<li><a href="api/scot/scot.html#module-scot.parallel">scot.parallel</a>
</li>
<li><a href="api/scot/scot.html#module-scot.pca">scot.pca</a>
</li>
<li><a href="api/scot/scot.html#module-scot.plainica">scot.plainica</a>
</li>
<li><a href="api/scot/scot.html#module-scot.plotting">scot.plotting</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests">scot.tests</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.generate_testdata">scot.tests.generate_testdata</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.test_connectivity">scot.tests.test_connectivity</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.test_csp">scot.tests.test_csp</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.test_datatools">scot.tests.test_datatools</a>
</li>
<li><a href="api/scot/scot.tests.test_eegtopo.html#module-scot.tests.test_eegtopo">scot.tests.test_eegtopo</a>
</li>
<li><a href="api/scot/scot.tests.test_eegtopo.test_geometry.html#module-scot.tests.test_eegtopo.test_geometry">scot.tests.test_eegtopo.test_geometry</a>
</li>
<li><a href="api/scot/scot.tests.test_eegtopo.test_geometry.html#module-scot.tests.test_eegtopo.test_geometry.test_euclidean">scot.tests.test_eegtopo.test_geometry.test_euclidean</a>
</li>
<li><a href="api/scot/scot.tests.test_eegtopo.test_geometry.html#module-scot.tests.test_eegtopo.test_geometry.test_spherical">scot.tests.test_eegtopo.test_geometry.test_spherical</a>
</li>
<li><a href="api/scot/scot.tests.test_eegtopo.html#module-scot.tests.test_eegtopo.test_warp">scot.tests.test_eegtopo.test_warp</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.test_ooapi">scot.tests.test_ooapi</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.test_parallel">scot.tests.test_parallel</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.test_pca">scot.tests.test_pca</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.test_plainica">scot.tests.test_plainica</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.test_plotting">scot.tests.test_plotting</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.test_statistics">scot.tests.test_statistics</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.test_utils">scot.tests.test_utils</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.test_var">scot.tests.test_var</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.test_var_builtin">scot.tests.test_var_builtin</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.test_var_sklearn">scot.tests.test_var_sklearn</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.test_varica">scot.tests.test_varica</a>
</li>
<li><a href="api/scot/scot.tests.html#module-scot.tests.test_xvschema">scot.tests.test_xvschema</a>
</li>
<li><a href="api/scot/scot.html#module-scot.utils">scot.utils</a>
</li>
<li><a href="api/scot/scot.html#module-scot.var">scot.var</a>
</li>
<li><a href="api/scot/scot.html#module-scot.varbase">scot.varbase</a>
</li>
<li><a href="api/scot/scot.html#module-scot.varica">scot.varica</a>
</li>
<li><a href="api/scot/scot.html#module-scot.xvschema">scot.xvschema</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.xvschema.multitrial">multitrial() (in module scot.xvschema)</a>
</li>
<li><a href="glossary.html#term-MVAR"><strong>MVAR</strong></a>
</li>
<li><a href="glossary.html#term-MVARICA"><strong>MVARICA</strong></a>
</li>
<li><a href="api/scot/scot.html#scot.varica.mvarica">mvarica() (in module scot.varica)</a>
</li>
</ul></td>
</tr></table>
<h2 id="N">N</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.backendmanager.BackendManager.names">names() (scot.backendmanager.BackendManager method)</a>
</li>
<li><a href="api/scot/scot.html#scot.plotting.new_figure">new_figure() (in module scot.plotting)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_euclidean.Vector.norm">norm() (scot.eegtopo.geo_euclidean.Vector method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_euclidean.Vector.norm2">norm2() (scot.eegtopo.geo_euclidean.Vector method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_euclidean.Vector.normalize">normalize() (scot.eegtopo.geo_euclidean.Vector method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_euclidean.Vector.normalized">normalized() (scot.eegtopo.geo_euclidean.Vector method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="O">O</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.var.VAR.optimize">optimize() (scot.var.VAR method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.varbase.VARBase.optimize">(scot.varbase.VARBase method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.var.VAR.optimize_delta_bisection">optimize_delta_bisection() (scot.var.VAR method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.var.VAR.optimize_order">optimize_order() (scot.var.VAR method)</a>
</li>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.optimize_var">optimize_var() (scot.ooapi.Workspace method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.Workspace.optimize_var">(scot.Workspace method)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="P">P</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.parallel.parallel_loop">parallel_loop() (in module scot.parallel)</a>
</li>
<li><a href="glossary.html#term-PCA"><strong>PCA</strong></a>
</li>
<li><a href="api/scot/scot.html#scot.pca.pca">pca() (in module scot.pca)</a>
</li>
<li><a href="api/scot/scot.html#scot.pca.pca_eig">pca_eig() (in module scot.pca)</a>
</li>
<li><a href="api/scot/scot.html#scot.pca.pca_svd">pca_svd() (in module scot.pca)</a>
</li>
<li><a href="api/scot/scot.html#scot.Connectivity.pCOH">pCOH() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.pCOH">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.Connectivity.PDC">PDC() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.PDC">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.Connectivity.PDCF">PDCF() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.PDCF">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.Connectivity.PHI">PHI() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.PHI">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.plainica.plainica">plainica() (in module scot.plainica)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.topoplot.Topoplot.plot_circles">plot_circles() (scot.eegtopo.topoplot.Topoplot method)</a>
</li>
<li><a href="api/scot/scot.html#scot.plotting.plot_circular">plot_circular() (in module scot.plotting)</a>
</li>
<li><a href="api/scot/scot.html#scot.plotting.plot_connectivity_significance">plot_connectivity_significance() (in module scot.plotting)</a>
</li>
<li><a href="api/scot/scot.html#scot.plotting.plot_connectivity_spectrum">plot_connectivity_spectrum() (in module scot.plotting)</a>
</li>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.plot_connectivity_surrogate">plot_connectivity_surrogate() (scot.ooapi.Workspace method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.Workspace.plot_connectivity_surrogate">(scot.Workspace method)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.plotting.plot_connectivity_timespectrum">plot_connectivity_timespectrum() (in module scot.plotting)</a>
</li>
<li><a href="api/scot/scot.html#scot.plotting.plot_connectivity_topos">plot_connectivity_topos() (in module scot.plotting)</a>
<ul>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.plot_connectivity_topos">(scot.ooapi.Workspace method)</a>
</li>
<li><a href="api/scot/scot.html#scot.Workspace.plot_connectivity_topos">(scot.Workspace method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.topoplot.Topoplot.plot_head">plot_head() (scot.eegtopo.topoplot.Topoplot method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.topoplot.Topoplot.plot_locations">plot_locations() (scot.eegtopo.topoplot.Topoplot method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.topoplot.Topoplot.plot_map">plot_map() (scot.eegtopo.topoplot.Topoplot method)</a>
</li>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.plot_source_topos">plot_source_topos() (scot.ooapi.Workspace method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.Workspace.plot_source_topos">(scot.Workspace method)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.html#scot.plotting.plot_sources">plot_sources() (in module scot.plotting)</a>
</li>
<li><a href="api/scot/scot.html#scot.plotting.plot_topo">plot_topo() (in module scot.plotting)</a>
</li>
<li><a href="api/scot/scot.html#scot.plotting.plot_whiteness">plot_whiteness() (in module scot.plotting)</a>
</li>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.plotting">plotting (scot.ooapi.Workspace property)</a>
<ul>
<li><a href="api/scot/scot.html#scot.Workspace.plotting">(scot.Workspace property)</a>
</li>
</ul></li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_spherical.Point">Point (class in scot.eegtopo.geo_spherical)</a>
</li>
<li><a href="api/scot/scot.html#scot.varbase.VARBase.predict">predict() (scot.varbase.VARBase method)</a>
</li>
<li><a href="api/scot/scot.html#scot.plotting.prepare_topoplots">prepare_topoplots() (in module scot.plotting)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.projections.project_radial_to2d">project_radial_to2d() (in module scot.eegtopo.projections)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.projections.project_radial_to3d">project_radial_to3d() (in module scot.eegtopo.projections)</a>
</li>
</ul></td>
</tr></table>
<h2 id="R">R</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.datatools.randomize_phase">randomize_phase() (in module scot.datatools)</a>
</li>
<li><a href="api/scot/scot.html#scot.backendmanager.BackendManager.register">register() (scot.backendmanager.BackendManager method)</a>
</li>
<li><a href="api/scot/scot.html#scot.ooapi.Workspace.remove_sources">remove_sources() (scot.ooapi.Workspace method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.Workspace.remove_sources">(scot.Workspace method)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.plainica.ResultICA">ResultICA (class in scot.plainica)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_euclidean.Vector.rotate">rotate() (scot.eegtopo.geo_euclidean.Vector method)</a>
</li>
<li><a href="api/scot/scot.eegtopo.html#scot.eegtopo.geo_euclidean.Vector.rotated">rotated() (scot.eegtopo.geo_euclidean.Vector method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="S">S</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="api/scot/scot.html#scot.Connectivity.S">S() (scot.Connectivity method)</a>
<ul>
<li><a href="api/scot/scot.html#scot.connectivity.Connectivity.S">(scot.connectivity.Connectivity method)</a>
</li>
</ul></li>
<li>
scot
<ul>
<li><a href="api/scot/scot.html#module-scot">module</a>
</li>
</ul></li>
<li>
scot.backend_builtin
<ul>
<li><a href="api/scot/scot.html#module-scot.backend_builtin">module</a>
</li>
</ul></li>
<li>
scot.backend_mne
<ul>
<li><a href="api/scot/scot.html#module-scot.backend_mne">module</a>
</li>
</ul></li>
<li>
scot.backend_sklearn
<ul>
<li><a href="api/scot/scot.html#module-scot.backend_sklearn">module</a>
</li>
</ul></li>
<li>
scot.backendmanager
<ul>
<li><a href="api/scot/scot.html#module-scot.backendmanager">module</a>
</li>
</ul></li>
<li>
scot.config
<ul>
<li><a href="api/scot/scot.html#module-scot.config">module</a>
</li>
</ul></li>
<li>
scot.connectivity
<ul>
<li><a href="api/scot/scot.html#module-scot.connectivity">module</a>
</li>
</ul></li>
<li>
scot.connectivity_statistics
<ul>
<li><a href="api/scot/scot.html#module-scot.connectivity_statistics">module</a>
</li>
</ul></li>
<li>
scot.csp
<ul>
<li><a href="api/scot/scot.html#module-scot.csp">module</a>
</li>
</ul></li>
<li>
scot.datasets
<ul>
<li><a href="api/scot/scot.html#module-scot.datasets">module</a>
</li>
</ul></li>
<li>
scot.datatools
<ul>
<li><a href="api/scot/scot.html#module-scot.datatools">module</a>
</li>
</ul></li>
<li>
scot.eegtopo
<ul>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo">module</a>
</li>
</ul></li>
<li>
scot.eegtopo.eegpos3d
<ul>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo.eegpos3d">module</a>
</li>
</ul></li>
<li>
scot.eegtopo.geo_euclidean
<ul>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo.geo_euclidean">module</a>
</li>
</ul></li>
<li>
scot.eegtopo.geo_spherical
<ul>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo.geo_spherical">module</a>
</li>
</ul></li>
<li>
scot.eegtopo.projections
<ul>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo.projections">module</a>
</li>
</ul></li>
<li>
scot.eegtopo.tools
<ul>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo.tools">module</a>
</li>
</ul></li>
<li>
scot.eegtopo.topoplot
<ul>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo.topoplot">module</a>
</li>
</ul></li>
<li>
scot.eegtopo.warp_layout
<ul>
<li><a href="api/scot/scot.eegtopo.html#module-scot.eegtopo.warp_layout">module</a>
</li>
</ul></li>
<li>
scot.external
<ul>
<li><a href="api/scot/scot.external.html#module-scot.external">module</a>
</li>
</ul></li>
<li>
scot.external.infomax_
<ul>
<li><a href="api/scot/scot.external.html#module-scot.external.infomax_">module</a>
</li>
</ul></li>
<li>
scot.matfiles
<ul>
<li><a href="api/scot/scot.html#module-scot.matfiles">module</a>
</li>
</ul></li>
<li>
scot.ooapi
<ul>
<li><a href="api/scot/scot.html#module-scot.ooapi">module</a>
</li>
</ul></li>
<li>
scot.parallel
<ul>
<li><a href="api/scot/scot.html#module-scot.parallel">module</a>
</li>
</ul></li>
<li>
scot.pca
<ul>
<li><a href="api/scot/scot.html#module-scot.pca">module</a>
</li>
</ul></li>
<li>
scot.plainica
<ul>
<li><a href="api/scot/scot.html#module-scot.plainica">module</a>
</li>
</ul></li>
<li>
scot.plotting
<ul>
<li><a href="api/scot/scot.html#module-scot.plotting">module</a>
</li>
</ul></li>
<li>
scot.tests
<ul>
<li><a href="api/scot/scot.tests.html#module-scot.tests">module</a>
</li>
</ul></li>
<li>
scot.tests.generate_testdata
<ul>
<li><a href="api/scot/scot.tests.html#module-scot.tests.generate_testdata">module</a>
</li>