diff --git a/docs/_static/img/spatial-basic-analysis.png b/docs/_static/img/spatial-basic-analysis.png new file mode 100644 index 0000000000..846de8af08 Binary files /dev/null and b/docs/_static/img/spatial-basic-analysis.png differ diff --git a/docs/tutorials.rst b/docs/tutorials.rst index 5654f12c69..c59171a5b1 100644 --- a/docs/tutorials.rst +++ b/docs/tutorials.rst @@ -63,8 +63,8 @@ Spatial data * Basic analysis of spatial data: :tutorial:`spatial/basic-analysis` * Integrating spatial data with scRNA-seq using scanorama: :tutorial:`spatial/integration-scanorama` -.. image:: https://scanpy-tutorials.readthedocs.io/en/latest/_images/spatial_integration-scanorama_23_0.png - :width: 350px +.. image:: _static/img/spatial-basic-analysis.png + :width: 250px Further Tutorials @@ -92,13 +92,14 @@ See the `cell cycle`_ notebook. .. _cell cycle: https://nbviewer.jupyter.org/github/theislab/scanpy_usage/blob/master/180209_cell_cycle/cell_cycle.ipynb -Scaling Computations -~~~~~~~~~~~~~~~~~~~~ - .. image:: http://falexwolf.de/img/scanpy_usage/170522_visualizing_one_million_cells/tsne_1.3M.png :width: 120px :align: right + +Scaling Computations +~~~~~~~~~~~~~~~~~~~~ + * Visualize and cluster `1.3M neurons`_ from 10x Genomics. .. _1.3M neurons: https://github.com/theislab/scanpy_usage/tree/master/170522_visualizing_one_million_cells @@ -111,9 +112,6 @@ Simulating single cells using literature-curated gene regulatory networks [Wittm .. image:: http://falexwolf.de/img/scanpy_usage/170430_krumsiek11/timeseries.png :width: 200px :align: right -.. image:: http://falexwolf.de/img/scanpy_usage/170430_krumsiek11/draw_graph.png - :width: 100px - :align: right * Notebook for `myeloid differentiation`_ * Notebook for simple toggleswitch_