From 95f2e1d2fa921c6433a04e257d844280ba0c25e5 Mon Sep 17 00:00:00 2001 From: Martin Kim <46072231+martinkim0@users.noreply.github.com> Date: Fri, 1 Mar 2024 09:44:59 -0800 Subject: [PATCH] Backport PR #2584 on branch 1.1.x ([releases] add date for 1.1.2) (#2586) --- docs/release_notes/index.md | 28 +++++++++++++++++++++++++++- 1 file changed, 27 insertions(+), 1 deletion(-) diff --git a/docs/release_notes/index.md b/docs/release_notes/index.md index ba4e793c98..0eccb19b27 100644 --- a/docs/release_notes/index.md +++ b/docs/release_notes/index.md @@ -7,7 +7,33 @@ is available in the [commit logs](https://github.com/scverse/scvi-tools/commits/ [keep a changelog]: https://keepachangelog.com/en/1.0.0/ [semantic versioning]: https://semver.org/spec/v2.0.0.html -### 1.1.2 (unreleased) +### 1.2.0 (unreleased) + +#### Added + +- Add new experimental functional API for hyperparameter tuning with + {func}`scvi.autotune.run_autotune` and {class}`scvi.autotune.AutotuneExperiment` to replace + {class}`scvi.autotune.ModelTuner`, {class}`scvi.autotune.TunerManager`, and + {class}`scvi.autotune.TuneAnalysis` {pr}`2561`. +- Add experimental class {class}`scvi.nn.Embedding` implementing methods for extending embeddings + {pr}`2574`. +- Add experimental support for representing batches with continuously-valued embeddings by passing + in `batch_representation="embedding"` to {class}`scvi.model.SCVI` {pr}`2576`. +- Add experimental mixin classes {class}`scvi.model.base.EmbeddingMixin` and + {class}`scvi.module.base.EmbeddingModuleMixin` {pr}`2576`. + +#### Changed + +- Deprecate {func}`scvi.data.cellxgene`, to be removed in v1.3. Please directly use the + [cellxgene-census](https://chanzuckerberg.github.io/cellxgene-census/) instead {pr}`2542`. + +#### Removed + +- Remove {class}`scvi.autotune.ModelTuner`, {class}`scvi.autotune.TunerManager`, and + {class}`scvi.autotune.TuneAnalysis` in favor of new experimental functional API with + {func}`scvi.autotune.run_autotune` and {class}`scvi.autotune.AutotuneExperiment` {pr}`2561`. + +### 1.1.2 (2024-03-01) #### Changed