diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..2ca8682 --- /dev/null +++ b/.gitignore @@ -0,0 +1,4 @@ +_site/ +.sass-cache/ +.jekyll-cache/ +.jekyll-metadata diff --git a/404.html b/404.html new file mode 100644 index 0000000..c472b4e --- /dev/null +++ b/404.html @@ -0,0 +1,24 @@ +--- +layout: default +--- + + + +
+

404

+ +

Page not found :(

+

The requested page could not be found.

+
diff --git a/Gemfile b/Gemfile new file mode 100644 index 0000000..e29f77e --- /dev/null +++ b/Gemfile @@ -0,0 +1,25 @@ +source "https://rubygems.org" + +# Hello! This is where you manage which Jekyll version is used to run. +# When you want to use a different version, change it below, save the +# file and run `bundle install`. Run Jekyll with `bundle exec`, like so: +# +# bundle exec jekyll serve +# +# This will help ensure the proper Jekyll version is running. +# Happy Jekylling! +# gem "jekyll", "~> 3.6.2" + + +# If you want to use GitHub Pages, remove the "gem "jekyll"" above and +# uncomment the line below. To upgrade, run `bundle update github-pages`. +gem "github-pages", group: :jekyll_plugins + +# If you have any plugins, put them here! +group :jekyll_plugins do + gem "jekyll-feed", "~> 0.6" +end + +# Windows does not include zoneinfo files, so bundle the tzinfo-data gem +gem 'tzinfo-data', platforms: [:mingw, :mswin, :x64_mingw, :jruby] + diff --git a/Gemfile.lock b/Gemfile.lock new file mode 100644 index 0000000..15957a4 --- /dev/null +++ b/Gemfile.lock @@ -0,0 +1,250 @@ +GEM + remote: https://rubygems.org/ + specs: + activesupport (6.0.2.2) + concurrent-ruby (~> 1.0, >= 1.0.2) + i18n (>= 0.7, < 2) + minitest (~> 5.1) + tzinfo (~> 1.1) + zeitwerk (~> 2.2) + addressable (2.7.0) + public_suffix (>= 2.0.2, < 5.0) + coffee-script (2.4.1) + coffee-script-source + execjs + coffee-script-source (1.11.1) + colorator (1.1.0) + commonmarker (0.17.13) + ruby-enum (~> 0.5) + concurrent-ruby (1.1.6) + dnsruby (1.61.3) + addressable (~> 2.5) + em-websocket (0.5.1) + eventmachine (>= 0.12.9) + http_parser.rb (~> 0.6.0) + ethon (0.12.0) + ffi (>= 1.3.0) + eventmachine (1.2.7) + execjs (2.7.0) + faraday (1.0.1) + multipart-post (>= 1.2, < 3) + ffi (1.12.2) + forwardable-extended (2.6.0) + gemoji (3.0.1) + github-pages (204) + github-pages-health-check (= 1.16.1) + jekyll (= 3.8.5) + jekyll-avatar (= 0.7.0) + jekyll-coffeescript (= 1.1.1) + jekyll-commonmark-ghpages (= 0.1.6) + jekyll-default-layout (= 0.1.4) + jekyll-feed (= 0.13.0) + jekyll-gist (= 1.5.0) + jekyll-github-metadata (= 2.13.0) + jekyll-mentions (= 1.5.1) + jekyll-optional-front-matter (= 0.3.2) + jekyll-paginate (= 1.1.0) + jekyll-readme-index (= 0.3.0) + jekyll-redirect-from (= 0.15.0) + jekyll-relative-links (= 0.6.1) + jekyll-remote-theme (= 0.4.1) + jekyll-sass-converter (= 1.5.2) + jekyll-seo-tag (= 2.6.1) + jekyll-sitemap (= 1.4.0) + jekyll-swiss (= 1.0.0) + jekyll-theme-architect (= 0.1.1) + jekyll-theme-cayman (= 0.1.1) + jekyll-theme-dinky (= 0.1.1) + jekyll-theme-hacker (= 0.1.1) + jekyll-theme-leap-day (= 0.1.1) + jekyll-theme-merlot (= 0.1.1) + jekyll-theme-midnight (= 0.1.1) + jekyll-theme-minimal (= 0.1.1) + jekyll-theme-modernist (= 0.1.1) + jekyll-theme-primer (= 0.5.4) + jekyll-theme-slate (= 0.1.1) + jekyll-theme-tactile (= 0.1.1) + jekyll-theme-time-machine (= 0.1.1) + jekyll-titles-from-headings (= 0.5.3) + jemoji (= 0.11.1) + kramdown (= 1.17.0) + liquid (= 4.0.3) + mercenary (~> 0.3) + minima (= 2.5.1) + nokogiri (>= 1.10.4, < 2.0) + rouge (= 3.13.0) + terminal-table (~> 1.4) + github-pages-health-check (1.16.1) + addressable (~> 2.3) + dnsruby (~> 1.60) + octokit (~> 4.0) + public_suffix (~> 3.0) + typhoeus (~> 1.3) + html-pipeline (2.12.3) + activesupport (>= 2) + nokogiri (>= 1.4) + http_parser.rb (0.6.0) + i18n (0.9.5) + concurrent-ruby (~> 1.0) + jekyll (3.8.5) + addressable (~> 2.4) + colorator (~> 1.0) + em-websocket (~> 0.5) + i18n (~> 0.7) + jekyll-sass-converter (~> 1.0) + jekyll-watch (~> 2.0) + kramdown (~> 1.14) + liquid (~> 4.0) + mercenary (~> 0.3.3) + pathutil (~> 0.9) + rouge (>= 1.7, < 4) + safe_yaml (~> 1.0) + jekyll-avatar (0.7.0) + jekyll (>= 3.0, < 5.0) + jekyll-coffeescript (1.1.1) + coffee-script (~> 2.2) + coffee-script-source (~> 1.11.1) + jekyll-commonmark (1.3.1) + commonmarker (~> 0.14) + jekyll (>= 3.7, < 5.0) + jekyll-commonmark-ghpages (0.1.6) + commonmarker (~> 0.17.6) + jekyll-commonmark (~> 1.2) + rouge (>= 2.0, < 4.0) + jekyll-default-layout (0.1.4) + jekyll (~> 3.0) + jekyll-feed (0.13.0) + jekyll (>= 3.7, < 5.0) + jekyll-gist (1.5.0) + octokit (~> 4.2) + jekyll-github-metadata (2.13.0) + jekyll (>= 3.4, < 5.0) + octokit (~> 4.0, != 4.4.0) + jekyll-mentions (1.5.1) + html-pipeline (~> 2.3) + jekyll (>= 3.7, < 5.0) + jekyll-optional-front-matter (0.3.2) + jekyll (>= 3.0, < 5.0) + jekyll-paginate (1.1.0) + jekyll-readme-index (0.3.0) + jekyll (>= 3.0, < 5.0) + jekyll-redirect-from (0.15.0) + jekyll (>= 3.3, < 5.0) + jekyll-relative-links (0.6.1) + jekyll (>= 3.3, < 5.0) + jekyll-remote-theme (0.4.1) + addressable (~> 2.0) + jekyll (>= 3.5, < 5.0) + rubyzip (>= 1.3.0) + jekyll-sass-converter (1.5.2) + sass (~> 3.4) + jekyll-seo-tag (2.6.1) + jekyll (>= 3.3, < 5.0) + jekyll-sitemap (1.4.0) + jekyll (>= 3.7, < 5.0) + jekyll-swiss (1.0.0) + jekyll-theme-architect (0.1.1) + jekyll (~> 3.5) + jekyll-seo-tag (~> 2.0) + jekyll-theme-cayman (0.1.1) + jekyll (~> 3.5) + jekyll-seo-tag (~> 2.0) + jekyll-theme-dinky (0.1.1) + jekyll (~> 3.5) + jekyll-seo-tag (~> 2.0) + jekyll-theme-hacker (0.1.1) + jekyll (~> 3.5) + jekyll-seo-tag (~> 2.0) + jekyll-theme-leap-day (0.1.1) + jekyll (~> 3.5) + jekyll-seo-tag (~> 2.0) + jekyll-theme-merlot (0.1.1) + jekyll (~> 3.5) + jekyll-seo-tag (~> 2.0) + jekyll-theme-midnight (0.1.1) + jekyll (~> 3.5) + jekyll-seo-tag (~> 2.0) + jekyll-theme-minimal (0.1.1) + jekyll (~> 3.5) + jekyll-seo-tag (~> 2.0) + jekyll-theme-modernist (0.1.1) + jekyll (~> 3.5) + jekyll-seo-tag (~> 2.0) + jekyll-theme-primer (0.5.4) + jekyll (> 3.5, < 5.0) + jekyll-github-metadata (~> 2.9) + jekyll-seo-tag (~> 2.0) + jekyll-theme-slate (0.1.1) + jekyll (~> 3.5) + jekyll-seo-tag (~> 2.0) + jekyll-theme-tactile (0.1.1) + jekyll (~> 3.5) + jekyll-seo-tag (~> 2.0) + jekyll-theme-time-machine (0.1.1) + jekyll (~> 3.5) + jekyll-seo-tag (~> 2.0) + jekyll-titles-from-headings (0.5.3) + jekyll (>= 3.3, < 5.0) + jekyll-watch (2.2.1) + listen (~> 3.0) + jemoji (0.11.1) + gemoji (~> 3.0) + html-pipeline (~> 2.2) + jekyll (>= 3.0, < 5.0) + kramdown (1.17.0) + liquid (4.0.3) + listen (3.2.1) + rb-fsevent (~> 0.10, >= 0.10.3) + rb-inotify (~> 0.9, >= 0.9.10) + mercenary (0.3.6) + mini_portile2 (2.4.0) + minima (2.5.1) + jekyll (>= 3.5, < 5.0) + jekyll-feed (~> 0.9) + jekyll-seo-tag (~> 2.1) + minitest (5.14.0) + multipart-post (2.1.1) + nokogiri (1.10.9) + mini_portile2 (~> 2.4.0) + octokit (4.18.0) + faraday (>= 0.9) + sawyer (~> 0.8.0, >= 0.5.3) + pathutil (0.16.2) + forwardable-extended (~> 2.6) + public_suffix (3.1.1) + rb-fsevent (0.10.3) + rb-inotify (0.10.1) + ffi (~> 1.0) + rouge (3.13.0) + ruby-enum (0.8.0) + i18n + rubyzip (2.3.0) + safe_yaml (1.0.5) + sass (3.7.4) + sass-listen (~> 4.0.0) + sass-listen (4.0.0) + rb-fsevent (~> 0.9, >= 0.9.4) + rb-inotify (~> 0.9, >= 0.9.7) + sawyer (0.8.2) + addressable (>= 2.3.5) + faraday (> 0.8, < 2.0) + terminal-table (1.8.0) + unicode-display_width (~> 1.1, >= 1.1.1) + thread_safe (0.3.6) + typhoeus (1.3.1) + ethon (>= 0.9.0) + tzinfo (1.2.7) + thread_safe (~> 0.1) + unicode-display_width (1.7.0) + zeitwerk (2.3.0) + +PLATFORMS + ruby + +DEPENDENCIES + github-pages + jekyll-feed (~> 0.6) + tzinfo-data + +BUNDLED WITH + 2.1.4 diff --git a/_config.yml b/_config.yml new file mode 100644 index 0000000..f207cca --- /dev/null +++ b/_config.yml @@ -0,0 +1,39 @@ +# Welcome to Jekyll! +# +# This config file is meant for settings that affect your whole blog, values +# which you are expected to set up once and rarely edit after that. If you find +# yourself editing this file very often, consider using Jekyll's data files +# feature for the data you need to update frequently. +# +# For technical reasons, this file is *NOT* reloaded automatically when you use +# 'bundle exec jekyll serve'. If you change this file, please restart the server process. +theme: jekyll-theme-minimal + +# Site settings +# These are used to personalize your new site. If you look in the HTML files, +# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on. +# You can create any custom variable you would like, and they will be accessible +# in the templates via {{ site.myvariable }}. +title: LEAP Consent Decision Service +description: >- # this means to ignore newlines until "baseurl:" + Documentation and Lessons Learned for the ONC LEAP Grant Consent Decision Service Project. + +logo: /assets/img/sdhc.png +show_downloads: "true" + +# Build settings +markdown: kramdown +plugins: + - jekyll-feed + +# Exclude from processing. +# The following items will not be processed, by default. Create a custom list +# to override the default setting. +# exclude: +# - Gemfile +# - Gemfile.lock +# - node_modules +# - vendor/bundle/ +# - vendor/cache/ +# - vendor/gems/ +# - vendor/ruby/ diff --git a/_layouts/default.html b/_layouts/default.html new file mode 100644 index 0000000..6403f31 --- /dev/null +++ b/_layouts/default.html @@ -0,0 +1,36 @@ + + + + + + + + + +
+
+

{{ site.title}}

+ + {% if site.logo %} + Logo + {% endif %} + +

{{ site.description | default: site.github.project_tagline }}

+ + {% if site.show_downloads %} + + {% endif %} +
+
+ + {{ content }} + +
+ +
+ + + \ No newline at end of file diff --git a/_layouts/post.html b/_layouts/post.html new file mode 100644 index 0000000..d48b893 --- /dev/null +++ b/_layouts/post.html @@ -0,0 +1,23 @@ +--- +layout: default +--- +

{{ page.title }}

+

{{ page.date | date_to_string }} - {{ page.author }}

+

Tags: + {% for tag in page.tags %} + {{ tag }} + {% endfor %} +

+ +{{ content }} + +
+ {% if page.previous.url %} + + {% else %} + + {% endif %} + {% if page.next.url %} + + {% endif %} +
diff --git a/_layouts/posts.html b/_layouts/posts.html new file mode 100644 index 0000000..84a91ac --- /dev/null +++ b/_layouts/posts.html @@ -0,0 +1,39 @@ + + + + + + + + + +
+
+

{{ site.title}}

+ + {% if site.logo %} + Logo + {% endif %} + +

{{ site.description | default: site.github.project_tagline }}

+ + {% if site.show_downloads %} + + {% endif %} +
+
+

Project Blog

+ {% for post in site.posts %} +
  • + {{ post.title }} ({{post.date | date: '%B %d, %Y' }}) +
    • + {% endfor %} +
    + +
    + + + \ No newline at end of file diff --git a/_posts/2020-04-02-architecture.md b/_posts/2020-04-02-architecture.md new file mode 100644 index 0000000..d5cbc38 --- /dev/null +++ b/_posts/2020-04-02-architecture.md @@ -0,0 +1,9 @@ +--- +layout: post +title: General Architecture of LEAP Consent Decision Service (CDS) +author: Mohammad Jafari +date: 2020-04-02 11:11:11 -0000 +categories: [blog] +tags: [architecture, cds] +--- +TBD. diff --git a/_sass/jekyll-theme-minimal.scss b/_sass/jekyll-theme-minimal.scss new file mode 100644 index 0000000..d99aa3d --- /dev/null +++ b/_sass/jekyll-theme-minimal.scss @@ -0,0 +1,263 @@ +@import "fonts"; +@import "rouge-github"; + +body { + background-color: #fff; + padding:50px; + font: 14px/1.5 "Noto Sans", "Helvetica Neue", Helvetica, Arial, sans-serif; + color:#727272; + font-weight:400; +} + +h1, h2, h3, h4, h5, h6 { + color:#222; + margin:0 0 20px; +} + +p, ul, ol, table, pre, dl { + margin:0 0 20px; +} + +h1, h2, h3 { + line-height:1.1; +} + +h1 { + font-size:28px; +} + +h2 { + color:#393939; +} + +h3, h4, h5, h6 { + color:#494949; +} + +a { + color:#267CB9; + text-decoration:none; +} + +a:hover, a:focus { + color:#069; +} + +a small { + font-size:11px; + color:#777; + margin-top:-0.3em; + display:block; +} + +a:hover small { + color:#777; +} + +.wrapper { + width:860px; + margin:0 auto; +} + +blockquote { + border-left:1px solid #e5e5e5; + margin:0; + padding:0 0 0 20px; + font-style:italic; +} + +code, pre { + font-family:Monaco, Bitstream Vera Sans Mono, Lucida Console, Terminal, Consolas, Liberation Mono, DejaVu Sans Mono, Courier New, monospace; + color:#333; +} + +pre { + padding:8px 15px; + background: #f8f8f8; + border-radius:5px; + border:1px solid #e5e5e5; + overflow-x: auto; +} + +table { + width:100%; + border-collapse:collapse; +} + +th, td { + text-align:left; + padding:5px 10px; + border-bottom:1px solid #e5e5e5; +} + +dt { + color:#444; + font-weight:700; +} + +th { + color:#444; +} + +img { + max-width:100%; +} + +header { + width:270px; + float:left; + position:fixed; + -webkit-font-smoothing:subpixel-antialiased; +} + +ul.downloads { + list-style:none; + height:40px; + padding:0; + background: #f4f4f4; + border-radius:5px; + border:1px solid #e0e0e0; + width:89px; +} + +.downloads li { + width:89px; + float:left; + border-right:1px solid #e0e0e0; + height:40px; +} + +.downloads a { + line-height:1; + font-size:11px; + color:#676767; + display:block; + text-align:center; + padding-top:6px; + height:34px; +} + +.downloads a:hover, .downloads a:focus { + color:#675C5C; + font-weight:bold; +} + +.downloads ul a:active { + background-color:#f0f0f0; +} + +strong { + color:#222; + font-weight:700; +} + +.downloads li + li + li { + border-right:none; + width:89px; +} + +.downloads a strong { + font-size:14px; + display:block; + color:#222; +} + +section { + width:500px; + float:right; + padding-bottom:50px; +} + +small { + font-size:11px; +} + +hr { + border:0; + background:#e5e5e5; + height:1px; + margin:0 0 20px; +} + +footer { + width:270px; + float:left; + position:fixed; + bottom:50px; + -webkit-font-smoothing:subpixel-antialiased; +} + +@media print, screen and (max-width: 960px) { + + div.wrapper { + width:auto; + margin:0; + } + + header, section, footer { + float:none; + position:static; + width:auto; + } + + header { + padding-right:320px; + } + + section { + border:1px solid #e5e5e5; + border-width:1px 0; + padding:20px 0; + margin:0 0 20px; + } + + header a small { + display:inline; + } + + header ul { + position:absolute; + right:50px; + top:52px; + } +} + +@media print, screen and (max-width: 720px) { + body { + word-wrap:break-word; + } + + header { + padding:0; + } + + header ul, header p.view { + position:static; + } + + pre, code { + word-wrap:normal; + } +} + +@media print, screen and (max-width: 480px) { + body { + padding:15px; + } + + .downloads { + width:99%; + } + + .downloads li, .downloads li + li + li { + width:33%; + } +} + +@media print { + body { + padding:0.4in; + font-size:12pt; + color:#444; + } +} \ No newline at end of file diff --git a/assets/img/sdhc.png b/assets/img/sdhc.png new file mode 100644 index 0000000..520f742 Binary files /dev/null and b/assets/img/sdhc.png differ diff --git a/index.md b/index.md new file mode 100644 index 0000000..34441c6 --- /dev/null +++ b/index.md @@ -0,0 +1,14 @@ +--- +layout: default +--- +## Public Code Artifacts +- [LEAP Consent Decision Service (CDS)](https://github.com/sdhealthconnect/leap-cds) +- [LEAP Consent Enforcement Service (CES) Java Client](https://github.com/sdhealthconnect/leap-ces-java-clients) + +## Documentation +Developer documentations are posted in the respective respositories. High-level architecture documentation and lessons-learned are posted in the [project blog](posts.html). + +## About +Funded by a grant from the [The Office of the National Coordinator for Health Information Technology (ONC)](https://www.healthit.gov/), The LEAP Consent Decision Service project is focused on standardization and implementation of a scalable patient consent service based on the HL7® FHIR® Consent resource. + +The research team includes individuals from [San Diego Health Connect](https://sdhealthconnect.org/) and [Cognitive Medical Systems](https://www.cognitivemedicalsystems.com/). diff --git a/posts.md b/posts.md new file mode 100644 index 0000000..4d92b47 --- /dev/null +++ b/posts.md @@ -0,0 +1,3 @@ +--- +layout: posts +--- \ No newline at end of file