diff --git a/README.md b/README.md index b71a1ff..8af9d04 100644 --- a/README.md +++ b/README.md @@ -17,6 +17,7 @@ N Yamada, PK Kuntala, BF Pugh, S Mahony. "ChExMix: a method for identifying and Downloading Executables -------------- + * ChExMix version 0.5 (2020-07-09): [JAR](http://lugh.bmb.psu.edu/software/chexmix/chexmix_v0.5.jar) * ChExMix version 0.45 (2019-12-11): [JAR](http://lugh.bmb.psu.edu/software/chexmix/chexmix_v0.45.jar) * ChExMix version 0.4 (2019-04-25): [JAR](http://lugh.bmb.psu.edu/software/chexmix/chexmix_v0.4.jar) * ChExMix version 0.3 (2019-01-15): [JAR](http://lugh.bmb.psu.edu/software/chexmix/chexmix_v0.3.jar) @@ -232,6 +233,8 @@ For queries, please contact Naomi (nuy11@psu.edu) or Shaun Mahony (mahony@psu.ed Major History: -------------- +Version 0.5 (2020-07-09): Fixing mishandling of multimapped reads in BWA output BAM files. Option --nonunique now works as expected. + Version 0.45 (2019-12-11): Comment out unused code fragments to reduce memory requirements. Print out ChExMix parameters in HTML outputs. Several updates on command line options to modify parameters. Bug fixes. Version 0.4 (2019-04-25): Updates on HTML output, heatmap, and sequence plots. Create extra outputs in event file. Updates on replicate handling options. Bug fixes.