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seqcode/cross-species-domain-adaptation
Error loading models with keras.models.load_model in 0_generate_predictions_for_other_notebooks

I have installed the versions of all dependancies listed in the README.md. 2_train_and_test_models/train.py calls the ModelSaveCallback class from callbacks.py, which saves model files in new directories ...
  • sbresnahan
  • Opened 
    on Nov 20, 2023
  • #8

seqcode/cross-species-domain-adaptation
Is it possible for you share the bed file with unbound/bound ALU regions?

Due to some technical issues I was unable to setup peak calling with MultiGPS and unable to generate the positive/negative window files chr3toY_pos_shuf.bed and chr3toY_pos_shuf.bed. I imagine these files ...
  • sheetalgiri
  • 1
  • Opened 
    on Nov 27, 2022
  • #7

seqcode/cross-species-domain-adaptation
Couldn't obtain all predicted values when using trained models

Hi @kellycochran, When I follow the 0_generate_predictions_for_other_notebooks.ipynb script to get predicted values by using trained models. I couldn t receive all predicted values, only multiples of ...
  • XuanrZhang
  • 3
  • Opened 
    on Sep 26, 2022
  • #6

seqcode/cross-species-domain-adaptation
0_generate_predictions_for_other_notebooks.ipynb can not work, since flipGradient module Error.

Hi kelly, @kellycochran @shaunmahony Can you share flipGradientTF.py file you use in 0_generate_predictions_for_other_notebooks.ipynb ? Since the flipGradientTF.py I downloaded from GitHub only works ...
  • XuanrZhang
  • 2
  • Opened 
    on Sep 14, 2022
  • #5

seqcode/cross-species-domain-adaptation
How to verify your trained models on the test data (chromosome 2)?

I did not find the source code for verifying the trained models on the test data. Could you please offer the source code about it? Many thanks.
  • turningpoint1988
  • 3
  • Opened 
    on Aug 5, 2022
  • #4

seqcode/cross-species-domain-adaptation
What exactly do species-background data refer to?

Are they binding peaks derived from the Human and Mouse species? Thanks a lot.
  • turningpoint1988
  • 2
  • Opened 
    on Jul 15, 2022
  • #3
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