nextflow_schema.json

{
    "$schema": "http://json-schema.org/draft-07/schema",
    "$id": "https://raw.githubusercontent.com/./master/nextflow_schema.json",
    "title": ". pipeline parameters",
    "description": "",
    "type": "object",
    "definitions": {
        "parameters": {
            "title": "Parameters",
            "type": "object",
            "description": "",
            "default": "",
            "properties": {
                "run": {
                    "type": "string",
                    "description": "Selectively run tests  as comma delimited values",
                    "help_text": "Tests to run as comma delimited values. E.g. --skip TEST_SUCCESS,TEST_INPUT. Case insensitive. Note this excludes all other tests."
                },
                "skip": {
                    "type": "string",
                    "description": "Tests to skip as comma delimited values.",
                    "help_text": "Tests to skip as comma delimited values. E.g. --skip TEST_SUCCESS,TEST_INPUT. Case insensitive."
                },
                "remoteFile": {
                    "type": "string",
                    "description": "Path to remote file to download and use.",
                    "help_text": "Path to a remote file to use within the pipeline. This mimics a remote set of files such as reference data that may need to be retrieved prior to analysis. By default this is not specified and the test is not ran, add a remote file using standard Nextflow filenaming to pull a file from your storage (e.g. an S3 bucket or shared storage).",
                    "format": "path"
                },
                "outdir": {
                    "type": "string",
                    "description": "Path to use for publishing output files.",
                    "help_text": "Path to a remote folder to publish files to. If not specified, this is a subfolder within the working directory but if specified it will publish files to the path specified in this parameter.",
                    "format": "directory-path"
                }
            }
        }
    },
    "allOf": [
        {
            "$ref": "#/definitions/parameters"
        }
    ]
}