DESCRIPTION

Type: Package
Package: umiAnalyzer
Title: Tools for Analyzing Sequencing Data with Unique Molecular
    Identifiers
Version: 1.0.0
Date: 2021-11-23
Authors@R: c(
    person("Stefan", "Filges", , "stefan.filges@gu.se", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-5994-6699")),
    person("Gustav", "Johansson", , "gustav.johansson@gu.se", role = "ctb")
  )
Maintainer: Stefan Filges <stefan.filges@gu.se>
Description: Tools for analyzing sequencing data containing unique
    molecular identifiers generated by 'UMIErrorCorrect'
    (<https://github.com/stahlberggroup/umierrorcorrect>).
License: GPL-3
URL: https://github.com/sfilges/umiAnalyzer
BugReports: https://github.com/sfilges/umiAnalyzer/issues
Depends: 
    R (>= 4.1.0)
Imports: 
    BiocManager,
    dplyr (>= 0.7.5),
    DT (>= 0.19),
    forcats (>= 0.5.0),
    ggplot2 (>= 2.2.1),
    graphics,
    grDevices,
    gridExtra (>= 2.3),
    magrittr (>= 1.5),
    methods,
    pheatmap (>= 1.0.12),
    plotly (>= 4.9.2.1),
    readr (>= 1.1.1),
    Rsamtools (>= 1.32.3),
    scales (>= 1.1.0),
    shiny (>= 1.7.1),
    shinydashboard (>= 0.7.2),
    shinyFiles (>= 0.9.0),
    shinyWidgets (>= 0.6.2),
    stats,
    stringr (>= 1.4.0),
    tibble (>= 1.4.2),
    tidyr (>= 0.8.1),
    utils,
    viridis (>= 0.5.1)
Suggests:
    testthat (>= 3.0.0),
    knitr (>= 1.27),
    rmarkdown (>= 2.1)
VignetteBuilder: 
    knitr
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-US
LazyData: true
RoxygenNote: 7.1.2