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test_544.mutect2.vcf
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test_544.mutect2.vcf
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##fileformat=VCFv4.2
##FILTER=<ID=alt_allele_in_normal,Description="Evidence seen in the normal sample">
##FILTER=<ID=clustered_events,Description="Clustered events observed in the tumor">
##FILTER=<ID=clustered_read_position,Description="Evidence for somatic variant clusters near the ends of reads">
##FILTER=<ID=germline_risk,Description="Evidence indicates this site is germline, not somatic">
##FILTER=<ID=homologous_mapping_event,Description="More than three events were observed in the tumor">
##FILTER=<ID=multi_event_alt_allele_in_normal,Description="Multiple events observed in tumor and normal">
##FILTER=<ID=panel_of_normals,Description="Seen in at least 2 samples in the panel of normals">
##FILTER=<ID=str_contraction,Description="Site filtered due to contraction of short tandem repeat region">
##FILTER=<ID=strand_artifact,Description="Evidence for alt allele comes from one read direction only">
##FILTER=<ID=t_lod_fstar,Description="Tumor does not meet likelihood threshold">
##FILTER=<ID=triallelic_site,Description="Site filtered because more than two alt alleles pass tumor LOD">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=AF,Number=1,Type=Float,Description="Allele fraction of the event in the tumor">
##FORMAT=<ID=ALT_F1R2,Number=1,Type=Integer,Description="Count of reads in F1R2 pair orientation supporting the alternate allele">
##FORMAT=<ID=ALT_F2R1,Number=1,Type=Integer,Description="Count of reads in F2R1 pair orientation supporting the alternate allele">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=FOXOG,Number=1,Type=Float,Description="Fraction of alt reads indicating OxoG error">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another">
##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##FORMAT=<ID=QSS,Number=A,Type=Integer,Description="Sum of base quality scores for each allele">
##FORMAT=<ID=REF_F1R2,Number=1,Type=Integer,Description="Count of reads in F1R2 pair orientation supporting the reference allele">
##FORMAT=<ID=REF_F2R1,Number=1,Type=Integer,Description="Count of reads in F2R1 pair orientation supporting the reference allele">
##GATKCommandLine.MuTect2=<ID=MuTect2,Version=3.8-0-ge9d806836,Date="Fri Jun 01 01:56:58 GMT 2018",Epoch=1527818218150,CommandLineOptions="analysis_type=MuTect2 input_file=[data/544T.recal_reheader.bam, data/544N.recal_reheader.bam] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=data/ucsc.hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=false use_jdk_inflater=false disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false cosmic=[(RodBinding name=cosmic source=data/CosmicAllMutsHeaderSorted.vcf)] normal_panel=[] dbsnp=(RodBinding name=dbsnp source=data/dbsnp_138.hg19.vcf) m2debug=false artifact_detection_mode=false initial_tumor_lod=4.0 initial_normal_lod=0.5 tumor_lod=6.3 normal_lod=2.2 dbsnp_normal_lod=5.5 max_alt_alleles_in_normal_count=1 max_alt_alleles_in_normal_qscore_sum=20 max_alt_allele_in_normal_fraction=0.03 power_constant_qscore=30 strand_artifact_lod=2.0 strand_artifact_power_threshold=0.9 enable_strand_artifact_filter=false enable_clustered_read_position_filter=false pir_median_threshold=10.0 pir_mad_threshold=3.0 debug=false useFilteredReadsForAnnotations=false emitRefConfidence=NONE bamOutput=null bamWriterType=CALLED_HAPLOTYPES emitDroppedReads=false disableOptimizations=false annotateNDA=false useNewAFCalculator=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 heterozygosity_stdev=0.01 standard_min_confidence_threshold_for_calling=10.0 standard_min_confidence_threshold_for_emitting=30.0 max_alternate_alleles=6 max_genotype_count=1024 max_num_PL_values=100 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.02 contamination_fraction_per_sample_file=null p_nonref_model=null exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=false kmerSize=[10, 25] dontIncreaseKmerSizesForCycles=false allowNonUniqueKmersInRef=false numPruningSamples=1 recoverDanglingHeads=false doNotRecoverDanglingBranches=false minDanglingBranchLength=4 consensus=false maxNumHaplotypesInPopulation=128 errorCorrectKmers=false minPruning=2 debugGraphTransformations=false allowCyclesInKmerGraphToGeneratePaths=false graphOutput=null kmerLengthForReadErrorCorrection=25 minObservationsForKmerToBeSolid=20 gcpHMM=10 pair_hmm_implementation=FASTEST_AVAILABLE phredScaledGlobalReadMismappingRate=45 noFpga=false nativePairHmmThreads=1 useDoublePrecision=false debug_read_name=null MQ_filtering_level=20 comp=[] annotation=[DepthPerAlleleBySample, BaseQualitySumPerAlleleBySample, TandemRepeatAnnotator, OxoGReadCounts] excludeAnnotation=[SpanningDeletions] out=/data/544.mutect2.vcf dontTrimActiveRegions=false maxDiscARExtension=25 maxGGAARExtension=300 paddingAroundIndels=150 paddingAroundSNPs=20 keepRG=null min_base_quality_score=10 errorCorrectReads=false captureAssemblyFailureBAM=false dontUseSoftClippedBases=false justDetermineActiveRegions=false doNotRunPhysicalPhasing=false maxReadsInRegionPerSample=1000 minReadsPerAlignmentStart=5 activityProfileOut=null activeRegionOut=null activeRegionIn=null activeRegionExtension=null forceActive=false activeRegionMaxSize=null bandPassSigma=null maxReadsInMemoryPerSample=30000 maxTotalReadsInMemory=10000000 maxProbPropagationDistance=50 activeProbabilityThreshold=0.002 filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=ECNT,Number=1,Type=String,Description="Number of events in this haplotype">
##INFO=<ID=HCNT,Number=1,Type=String,Description="Number of haplotypes that support this variant">
##INFO=<ID=MAX_ED,Number=1,Type=Integer,Description="Maximum distance between events in this active region">
##INFO=<ID=MIN_ED,Number=1,Type=Integer,Description="Minimum distance between events in this active region">
##INFO=<ID=NLOD,Number=1,Type=String,Description="Normal LOD score">
##INFO=<ID=PON,Number=1,Type=String,Description="Count from Panel of Normals">
##INFO=<ID=RPA,Number=.,Type=Integer,Description="Number of times tandem repeat unit is repeated, for each allele (including reference)">
##INFO=<ID=RU,Number=1,Type=String,Description="Tandem repeat unit (bases)">
##INFO=<ID=STR,Number=0,Type=Flag,Description="Variant is a short tandem repeat">
##INFO=<ID=TLOD,Number=1,Type=String,Description="Tumor LOD score">
##SAMPLE=<ID=NORMAL,SampleName=544N,File=/data/544N.recal_reheader.bam>
##SAMPLE=<ID=TUMOR,SampleName=544T,File=/data/544T.recal_reheader.bam>
##contig=<ID=chrM,length=16571,assembly=hg19>
##contig=<ID=chr1,length=249250621,assembly=hg19>
##contig=<ID=chr2,length=243199373,assembly=hg19>
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##contig=<ID=chr8,length=146364022,assembly=hg19>
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##contig=<ID=chr1_gl000191_random,length=106433,assembly=hg19>
##contig=<ID=chr1_gl000192_random,length=547496,assembly=hg19>
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##contig=<ID=chrUn_gl000240,length=41933,assembly=hg19>
##contig=<ID=chrUn_gl000241,length=42152,assembly=hg19>
##contig=<ID=chrUn_gl000242,length=43523,assembly=hg19>
##contig=<ID=chrUn_gl000243,length=43341,assembly=hg19>
##contig=<ID=chrUn_gl000244,length=39929,assembly=hg19>
##contig=<ID=chrUn_gl000245,length=36651,assembly=hg19>
##contig=<ID=chrUn_gl000246,length=38154,assembly=hg19>
##contig=<ID=chrUn_gl000247,length=36422,assembly=hg19>
##contig=<ID=chrUn_gl000248,length=39786,assembly=hg19>
##contig=<ID=chrUn_gl000249,length=38502,assembly=hg19>
##reference=file:///data/ucsc.hg19.fasta
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR NORMAL
chrM 12706 rs267606893 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=7.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.500:4:0:1.00:74,154:1:1 0/0:9,0:0.00:0:0:.:361,0:5:4
chr1 17365 rs369606208 C G . alt_allele_in_normal DB;ECNT=1;HCNT=32;MAX_ED=.;MIN_ED=.;NLOD=4.52;TLOD=13.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,4:0.160:3:1:0.250:1044,167:12:15 0/0:53,3:0.048:2:1:0.333:2136,127:32:21
chr1 935459 rs3128113 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,81:0:0 0/0:5,0:0.00:0:0:.:177,0:2:3
chr1 1022420 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.76;TLOD=4.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:32,2:0.061:2:0:0.00:1264,69:14:18 0/0:64,0:0.00:0:0:.:2641,0:32:32
chr1 1139757 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.31;TLOD=4.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:39,2:0.054:1:1:0.500:1538,69:22:17 0/0:66,0:0.00:0:0:.:2558,0:33:33
chr1 1233378 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.35;TLOD=4.54 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:70,3:0.037:3:0:1.00:2722,107:27:43 0/0:68,0:0.00:0:0:.:2725,0:31:37
chr1 1310197 . A G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.52;TLOD=21.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,11:0.259:6:5:0.455:928,396:12:12 0/0:31,0:0.00:0:0:.:1194,0:15:16
chr1 1431048 rs201429000 A G . clustered_events;multi_event_alt_allele_in_normal DB;ECNT=2;HCNT=4;MAX_ED=12;MIN_ED=12;NLOD=22.23;TLOD=8.04 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:83,5:0.055:3:2:0.400:2900,162:36:47 0/0:87,1:0.00:0:1:1.00:3229,34:38:49
chr1 1431060 rs9792997 T C . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=4;MAX_ED=12;MIN_ED=12;NLOD=17.17;TLOD=10.74 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:86,6:0.065:3:3:0.500:3184,207:40:46 0/0:80,2:0.014:1:1:0.500:3042,81:35:45
chr1 1480154 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.94;TLOD=4.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:58,3:0.042:0:3:0.00:2142,107:28:30 0/0:53,0:0.00:0:0:.:2111,0:18:35
chr1 1583088 rs373218489 A G . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=6.05;TLOD=4.84 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:50,5:0.087:2:3:0.600:1870,197:19:31 0/0:61,5:0.077:3:2:0.400:2420,205:39:22
chr1 1846461 rs41306992 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.92 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.667:1:2:0.667:74,107:0:2 0/0:4,0:0.00:0:0:.:165,0:0:4
chr1 2015441 rs3121829 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=8.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,77:0:0 0/0:4,0:0.00:0:0:.:152,0:2:2
chr1 2338007 . G A . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=12.94;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:58,3:0.044:2:1:0.667:2269,106:30:28 0/0:58,0:0.00:0:0:.:2325,0:33:25
chr1 2383756 rs10797425 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=19.91 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,7:0.857:3:4:0.571:38,223:1:0 0/0:5,0:0.00:0:0:.:192,0:1:4
chr1 2535570 . G C . clustered_events;multi_event_alt_allele_in_normal ECNT=2;HCNT=8;MAX_ED=5;MIN_ED=5;NLOD=2.61;TLOD=6.39 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:20,4:0.143:2:2:0.500:0|1:2535570_G_C:714,93:7:13 0/0:13,1:0.067:0:1:0.00:0|1:2535570_G_C:486,10:3:10
chr1 2535575 . G C . clustered_events;germline_risk;multi_event_alt_allele_in_normal ECNT=2;HCNT=8;MAX_ED=5;MIN_ED=5;NLOD=3.81;TLOD=6.39 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:18,4:0.143:2:2:0.500:0|1:2535570_G_C:656,84:6:12 0/0:18,1:0.053:0:1:0.00:0|1:2535570_G_C:640,11:7:11
chr1 2704396 . C A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=10.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:18,4:0.211:1:3:0.750:656,138:10:8 0/0:11,0:0.00:0:0:.:455,0:5:6
chr1 6166767 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.43;TLOD=5.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:36,4:0.071:2:2:0.500:1190,126:12:24 0/0:49,0:0.00:0:0:.:1716,0:20:29
chr1 7740250 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.13;TLOD=4.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:39,3:0.061:0:3:0.00:1522,104:21:18 0/0:29,0:0.00:0:0:.:1155,0:16:13
chr1 9099614 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=14.15;TLOD=4.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:50,4:0.049:4:0:1.00:1662,145:19:31 0/0:62,0:0.00:0:0:.:2217,0:24:38
chr1 9779895 . C T . t_lod_fstar ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=11.69;TLOD=4.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:43,3:0.051:0:3:1.00:1634,101:23:20 0/0:43,0:0.00:0:0:.:1681,0:22:21
chr1 10279308 rs61775872 T C . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=40;MIN_ED=40;NLOD=0.903;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,71:0:0 0/0:3,0:0.00:0:0:.:105,0:0:3
chr1 10279348 rs61775874 A G . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=40;MIN_ED=40;NLOD=0.903;TLOD=6.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.333:0,96:0:0 0/0:4,0:0.00:0:0:.:153,0:0:4
chr1 10718377 rs77639220 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=25.04 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,7:0.538:2:5:0.286:202,256:4:2 0/0:7,0:0.00:0:0:.:250,0:5:2
chr1 10718637 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=14.45;TLOD=4.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:41,3:0.054:0:3:0.00:1579,107:22:19 0/0:59,0:0.00:0:0:.:2380,0:20:39
chr1 11030205 rs151227635 G A . t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.52;TLOD=4.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,3:0.158:2:1:0.667:720,72:12:7 0/0:29,0:0.00:0:0:.:1115,0:15:14
chr1 11273453 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=5.27 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,1:0.154:0:1:1.00:543,36:9:5 0/0:11,0:0.00:0:0:.:450,0:6:5
chr1 12854842 rs11121980 G C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=11.63 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:1:2:0.333:0,110:0:0 0/0:5,0:0.00:0:0:.:198,0:4:1
chr1 12940016 rs55642883 C A . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.08;TLOD=5.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:28,4:0.100:4:0:0.00:1105,150:10:18 0/0:30,1:0.036:0:1:1.00:1169,38:13:17
chr1 13183115 rs111369527 G A . alt_allele_in_normal DB;ECNT=1;HCNT=20;MAX_ED=.;MIN_ED=.;NLOD=2.58;TLOD=7.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:57,4:0.067:3:1:0.750:2127,141:24:33 0/0:63,4:0.058:1:3:0.250:2385,148:33:30
chr1 15709498 . CCA C . str_contraction;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.52;RPA=6,5;RU=CA;STR;TLOD=4.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:22,2:0.095:1:1:.:875,81:9:13 0/0:30,0:0.00:0:0:.:1160,0:16:14
chr1 15772073 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.55;TLOD=4.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:56,4:0.044:4:0:0.00:2169,144:18:38 0/0:55,0:0.00:0:0:.:2223,0:36:19
chr1 15802457 . G T . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=4.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,2:0.063:2:0:1.00:1527,72:28:12 0/0:42,0:0.00:0:0:.:1701,0:25:17
chr1 15850553 rs4645984 C CGGGGGCG . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;RPA=1,2;RU=GGGGGCG;STR;TLOD=10.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.600:0:2:.:71,71:1:1 0/0:6,0:0.00:0:0:.:236,0:3:3
chr1 16010944 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=5.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,2:0.222:1:1:0.500:299,65:3:5 0/0:14,0:0.00:0:0:.:562,0:5:9
chr1 16027662 . C A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,74:0:0 0/0:4,0:0.00:0:0:.:158,0:3:1
chr1 16344290 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.58;TLOD=4.79 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,2:0.069:1:1:0.500:1225,70:16:19 0/0:40,0:0.00:0:0:.:1395,0:19:21
chr1 16474922 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.66;TLOD=4.44 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:85,3:0.029:0:3:1.00:3331,109:44:41 0/0:76,0:0.00:0:0:.:3124,0:44:32
chr1 16860695 rs201632500 G T . germline_risk DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.36 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,4:0.250:4:0:1.00:204,151:2:4 0/0:5,0:0.00:0:0:.:180,0:2:3
chr1 16891333 . C T . alt_allele_in_normal;clustered_events ECNT=2;HCNT=2;MAX_ED=7;MIN_ED=7;NLOD=6.39;TLOD=15.96 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:107,9:0.064:2:7:0.778:4075,351:55:52 0/0:113,7:0.052:4:3:0.429:4470,291:63:50
chr1 16891340 rs3962237 T A . alt_allele_in_normal;clustered_events;germline_risk DB;ECNT=2;HCNT=3;MAX_ED=7;MIN_ED=7;NLOD=1.16;TLOD=16.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:106,10:0.072:6:4:0.600:3763,328:50:56 0/0:111,10:0.071:5:5:0.500:4247,361:62:49
chr1 16891416 . G A . alt_allele_in_normal;clustered_events ECNT=4;HCNT=12;MAX_ED=118;MIN_ED=13;NLOD=21.08;TLOD=16.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:89,7:0.076:5:2:0.714:0|1:16891416_G_A:3099,206:42:47 0/0:99,3:0.011:0:3:0.00:0|1:16891416_G_A:3556,96:65:34
chr1 16891429 . A G . clustered_events;multi_event_alt_allele_in_normal ECNT=4;HCNT=12;MAX_ED=118;MIN_ED=13;NLOD=23.18;TLOD=13.44 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:87,6:0.062:4:2:0.333:0|1:16891416_G_A:2923,143:40:47 0/0:99,1:0.00:0:1:1.00:0|1:16891416_G_A:3555,41:65:34
chr1 16891513 . G A . alt_allele_in_normal;clustered_events ECNT=4;HCNT=6;MAX_ED=118;MIN_ED=13;NLOD=14.08;TLOD=8.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,4:0.108:0:4:0.00:1536,140:18:22 0/0:78,2:0.015:1:1:0.500:3158,80:52:26
chr1 16891534 . A G . alt_allele_in_normal;clustered_events ECNT=4;HCNT=9;MAX_ED=118;MIN_ED=13;NLOD=3.66;TLOD=9.73 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:38,6:0.118:2:4:0.667:1430,212:13:25 0/0:77,5:0.065:4:1:0.200:2981,209:51:26
chr1 16891639 . C T . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.45;TLOD=5.68 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,2:0.118:0:2:1.00:605,77:6:9 0/0:29,1:0.034:0:1:1.00:1208,38:20:9
chr1 16892256 rs200425003 T A . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=15;MAX_ED=82;MIN_ED=26;NLOD=18.98;TLOD=26.56 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:203,18:0.062:9:9:0.500:7632,689:96:107 0/0:258,20:0.048:11:9:0.550:10031,786:146:112
chr1 16892282 rs202078823 C A . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=16;MAX_ED=82;MIN_ED=26;NLOD=19.72;TLOD=24.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:156,14:0.067:11:3:0.214:5915,500:70:86 0/0:214,18:0.053:11:7:0.389:8552,705:117:97
chr1 16892338 . G A . alt_allele_in_normal;clustered_events ECNT=3;HCNT=16;MAX_ED=82;MIN_ED=26;NLOD=8.48;TLOD=12.53 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:51,8:0.121:5:3:0.625:1887,274:31:20 0/0:55,10:0.141:8:2:0.800:2190,350:26:29
chr1 16893070 rs199747102 C T . alt_allele_in_normal DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=9.44;TLOD=16.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:73,9:0.090:3:6:0.667:2770,339:36:37 0/0:98,6:0.038:3:3:0.500:3879,227:53:45
chr1 16893701 rs3927566 G A . alt_allele_in_normal DB;ECNT=1;HCNT=9;MAX_ED=.;MIN_ED=.;NLOD=6.27;TLOD=57.73 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:542,40:0.055:27:13:0.675:18786,1428:285:257 0/0:547,44:0.068:25:19:0.568:19741,1658:255:292
chr1 16894024 rs150275217 GA G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.41;RPA=3,2;RU=A;STR;TLOD=5.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,2:0.400:1:1:.:112,77:2:1 0/0:9,0:0.00:0:0:.:362,0:9:0
chr1 16902844 rs199969012 G T . alt_allele_in_normal DB;ECNT=1;HCNT=18;MAX_ED=.;MIN_ED=.;NLOD=34.90;TLOD=21.64 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:118,15:0.094:8:7:0.533:4682,578:70:48 0/0:257,13:0.030:7:6:0.538:10349,502:132:125
chr1 16908903 . G C . PASS ECNT=1;HCNT=10;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=9.11 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:18,3:0.143:3:0:1.00:672,120:8:10 0/0:17,0:0.00:0:0:.:657,0:11:6
chr1 16914580 rs28497995 G T . clustered_events;germline_risk DB;ECNT=2;HCNT=4;MAX_ED=17;MIN_ED=17;NLOD=0.903;TLOD=7.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,3:0.429:1:2:0.333:152,113:1:3 0/0:4,0:0.00:0:0:.:166,0:3:1
chr1 16914597 rs4661386 T G . alt_allele_in_normal;clustered_events;germline_risk DB;ECNT=2;HCNT=4;MAX_ED=17;MIN_ED=17;NLOD=0.602;TLOD=10.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.667:2:2:0.500:72,161:0:2 0/0:2,1:0.333:1:0:1.00:74,42:1:1
chr1 16914725 rs11586409 T A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.667:2:2:0.500:36,114:0:1 0/0:6,0:0.00:0:0:.:234,0:4:2
chr1 16931160 rs4596945 G C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=10.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,3:0.273:2:1:0.667:317,121:4:4 0/0:8,0:0.00:0:0:.:342,0:4:4
chr1 16950638 rs12144513 C T . clustered_events DB;ECNT=2;HCNT=1;MAX_ED=12;MIN_ED=12;NLOD=2.41;TLOD=6.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:11,2:0.154:1:1:0.500:0|1:16950638_C_T:394,75:4:7 0/0:8,0:0.00:0:0:.:0|1:16950638_C_T:322,0:5:3
chr1 16950650 rs12141607 G C . clustered_events;germline_risk DB;ECNT=2;HCNT=1;MAX_ED=12;MIN_ED=12;NLOD=2.41;TLOD=6.74 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:9,2:0.182:1:1:0.500:0|1:16950638_C_T:321,79:2:7 0/0:8,0:0.00:0:0:.:0|1:16950638_C_T:305,0:4:4
chr1 16952260 rs1762943 T C . alt_allele_in_normal DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.19;TLOD=8.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,4:0.115:4:0:1.00:850,147:12:12 0/0:42,2:0.026:0:2:0.00:1555,83:24:18
chr1 16953827 rs57007114 G GC . alt_allele_in_normal DB;ECNT=1;HCNT=18;MAX_ED=.;MIN_ED=.;NLOD=29.13;RPA=3,4;RU=C;STR;TLOD=8.14 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:216,10:0.038:8:2:.:8579,411:109:107 0/0:189,7:0.033:2:5:.:7662,286:103:86
chr1 16956555 rs9329440 C T . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.63;TLOD=5.74 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,2:0.100:0:2:1.00:815,76:10:14 0/0:30,1:0.037:1:0:0.00:1107,41:21:9
chr1 16958155 rs9658906 C T . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=17;MIN_ED=17;NLOD=1.20;TLOD=6.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,2:0.400:0:2:1.00:244,71:2:4 0/0:5,0:0.00:0:0:.:205,0:1:4
chr1 16958172 rs9658913 C G . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=17;MIN_ED=17;NLOD=1.20;TLOD=6.79 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,2:0.400:0:2:1.00:233,73:2:4 0/0:4,0:0.00:0:0:.:156,0:0:4
chr1 16963349 rs1759195 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.500:1:2:0.667:70,105:2:0 0/0:6,0:0.00:0:0:.:246,0:2:4
chr1 16973519 rs2501762 G A . alt_allele_in_normal DB;ECNT=1;HCNT=20;MAX_ED=.;MIN_ED=.;NLOD=29.42;TLOD=79.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:809,61:0.055:35:26:0.574:28149,2245:420:389 0/0:775,57:0.050:21:36:0.368:27976,2146:397:378
chr1 16974462 rs56653359 C G . alt_allele_in_normal DB;ECNT=1;HCNT=15;MAX_ED=.;MIN_ED=.;NLOD=40.87;TLOD=7.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:245,15:0.042:9:6:0.400:8362,543:130:115 0/0:242,13:0.043:8:5:0.385:8785,469:121:121
chr1 16974868 rs28715800 G T . alt_allele_in_normal DB;ECNT=1;HCNT=7;MAX_ED=.;MIN_ED=.;NLOD=10.63;TLOD=6.39 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:214,8:0.023:5:3:0.625:7210,303:103:111 0/0:186,16:0.074:10:6:0.625:6652,639:88:98
chr1 16975030 . G A . alt_allele_in_normal ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=56.20;TLOD=12.87 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:577,21:0.021:10:11:0.476:19914,750:277:300 0/0:482,28:0.044:13:15:0.464:17202,1067:250:232
chr1 16975289 rs200220176 T A . alt_allele_in_normal DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=53.45;TLOD=79.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:786,56:0.057:29:27:0.518:28132,2057:396:390 0/0:747,49:0.050:30:19:0.612:28622,1823:370:377
chr1 17013750 rs1765547 G A . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=4;MAX_ED=68;MIN_ED=68;NLOD=2.11;TLOD=5.76 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:12,2:0.143:0:2:0.00:379,73:6:6 0/0:7,0:0.00:0:0:.:232,0:4:3
chr1 17013818 rs657907 T A . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=4;MAX_ED=68;MIN_ED=68;NLOD=2.35;TLOD=30.67 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,12:0.250:5:7:0.417:1262,431:19:18 0/0:24,1:0.045:0:1:0.00:905,38:10:14
chr1 17030849 rs4661411 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,2:0.286:0:2:1.00:188,77:1:4 0/0:5,0:0.00:0:0:.:190,0:2:3
chr1 17031348 rs11580812 C G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.54 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.400:2:0:0.00:154,82:1:3 0/0:4,0:0.00:0:0:.:157,0:2:2
chr1 17084463 . G A . alt_allele_in_normal;clustered_events ECNT=2;HCNT=14;MAX_ED=73;MIN_ED=73;NLOD=24.98;TLOD=29.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:245,18:0.060:7:11:0.389:9520,688:114:131 0/0:275,16:0.043:10:6:0.625:11003,587:148:127
chr1 17084536 rs142741624 TGGAACA T . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=17;MAX_ED=73;MIN_ED=73;NLOD=55.97;TLOD=24.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:235,13:0.043:8:5:.:8773,480:107:128 0/0:305,9:0.012:6:3:.:11715,336:168:137
chr1 17085994 . CG C . alt_allele_in_normal ECNT=1;HCNT=14;MAX_ED=.;MIN_ED=.;NLOD=3.08;TLOD=6.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:75,8:0.077:5:3:.:2257,297:32:43 0/0:46,8:0.137:5:3:.:1523,312:16:30
chr1 17185605 . C G . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=6.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:12,3:0.200:3:0:0.00:403,111:4:8 0/0:26,0:0.00:0:0:.:907,0:16:10
chr1 17197418 rs368380382 T C . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.05;TLOD=4.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:30,2:0.065:1:1:0.500:1169,80:14:16 0/0:31,1:0.033:1:0:1.00:1222,35:13:18
chr1 17198174 . T C . alt_allele_in_normal ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=3.60;TLOD=12.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:42,5:0.111:2:3:0.400:1609,191:21:21 0/0:53,3:0.041:1:2:0.333:2076,124:28:25
chr1 17271851 . C G . alt_allele_in_normal;clustered_events ECNT=2;HCNT=1;MAX_ED=8;MIN_ED=8;NLOD=2.77;TLOD=25.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:66,10:0.136:6:4:0.400:0|1:17271851_C_G:2571,371:34:32 0/0:77,4:0.058:1:3:0.750:0|1:17271851_C_G:3046,129:36:41
chr1 17271859 rs2781604 C G . alt_allele_in_normal;clustered_events;germline_risk DB;ECNT=2;HCNT=1;MAX_ED=8;MIN_ED=8;NLOD=1.28;TLOD=29.21 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:70,10:0.141:6:4:0.400:0|1:17271851_C_G:2649,332:38:32 0/0:83,5:0.063:1:4:0.800:0|1:17271851_C_G:3297,164:38:45
chr1 17409382 rs2647187 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.957;TLOD=11.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,4:0.500:3:1:0.750:189,150:4:1 0/0:4,0:0.00:0:0:.:159,0:1:3
chr1 17413182 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.50;TLOD=4.14 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:67,4:0.037:0:4:1.00:2558,143:30:37 0/0:61,0:0.00:0:0:.:2456,0:26:35
chr1 18667321 rs6668265 C G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=15.44 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,5:0.800:1:4:0.800:38,180:0:1 0/0:5,0:0.00:0:0:.:185,0:4:1
chr1 19675442 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=4.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,3:0.100:3:0:1.00:933,105:15:9 0/0:29,0:0.00:0:0:.:1149,0:17:12
chr1 20072711 rs2235657 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.87 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,73:0:0 0/0:4,0:0.00:0:0:.:159,0:1:3
chr1 20304946 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.08;TLOD=7.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:22,5:0.150:0:5:1.00:769,170:13:9 0/0:37,0:0.00:0:0:.:1377,0:20:17
chr1 20466140 rs143257349 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.52;TLOD=4.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,2:0.143:2:0:1.00:543,64:6:8 0/0:17,0:0.00:0:0:.:692,0:10:7
chr1 20641025 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.32;TLOD=4.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:68,3:0.036:0:3:1.00:2580,109:34:34 0/0:76,0:0.00:0:0:.:3026,0:44:32
chr1 21050103 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.20;TLOD=4.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:46,3:0.047:0:3:0.00:1716,101:20:26 0/0:53,0:0.00:0:0:.:2146,0:28:25
chr1 21465930 rs10799685 A C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,71:0:0 0/0:5,0:0.00:0:0:.:199,0:0:5
chr1 21548310 . T C . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.54;TLOD=5.76 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,4:0.065:4:0:1.00:1391,151:11:26 0/0:43,0:0.00:0:0:.:1690,0:16:27
chr1 21936542 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=5.30 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:25,2:0.077:2:0:1.00:902,74:15:10 0/0:33,0:0.00:0:0:.:1326,0:17:16
chr1 22332008 rs56968853 T C . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.83;TLOD=4.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:34,3:0.071:2:1:0.667:1235,119:19:15 0/0:38,2:0.032:2:0:1.00:1422,82:16:22
chr1 22959638 rs679244 C A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,3:0.300:2:1:0.333:301,115:3:5 0/0:4,0:0.00:0:0:.:160,0:2:2
chr1 26356877 rs2275951 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.16;TLOD=11.63 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.667:0,102:0:0 0/0:5,0:0.00:0:0:.:135,0:1:4
chr1 26689220 rs12030833 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=14.96 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,4:0.500:2:2:0.500:143,157:2:2 0/0:7,0:0.00:0:0:.:258,0:3:4
chr1 30154614 rs556220 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=6.82 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.667:1:1:0.500:81,67:0:2 0/0:4,0:0.00:0:0:.:166,0:0:4
chr1 30392060 . A G . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,81:0:0 0/0:5,0:0.00:0:0:.:198,0:3:2
chr1 32096746 rs10914458 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=19.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,5:0.556:1:4:0.200:189,198:2:3 0/0:4,0:0.00:0:0:.:164,0:4:0
chr1 32279893 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=21.97;TLOD=4.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:72,3:0.032:2:1:0.667:2454,107:41:31 0/0:96,0:0.00:0:0:.:3433,0:46:50
chr1 32542718 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.13;TLOD=5.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:30,2:0.069:2:0:0.00:1146,73:17:13 0/0:31,0:0.00:0:0:.:1222,0:13:18
chr1 33147273 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=4.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,2:0.100:0:2:0.00:887,68:8:15 0/0:22,0:0.00:0:0:.:893,0:12:10
chr1 33236792 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.39;TLOD=4.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:44,3:0.056:0:3:1.00:1638,104:21:23 0/0:43,0:0.00:0:0:.:1666,0:19:24
chr1 34190997 . G C . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=6.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,2:0.083:1:1:0.500:1038,82:18:9 0/0:51,0:0.00:0:0:.:1993,0:22:29
chr1 34631200 . AACAC A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;RPA=9,7;RU=AC;STR;TLOD=6.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,3:0.095:1:2:.:707,115:10:9 0/0:36,0:0.00:0:0:.:1436,0:16:20
chr1 37568667 rs140760720 AAAG A . germline_risk;str_contraction DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;RPA=4,3;RU=AAG;STR;TLOD=7.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:2:0:.:69,75:2:0 0/0:7,0:0.00:0:0:.:277,0:3:4
chr1 37984046 rs6689805 G C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.73 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.667:0,86:0:0 0/0:4,0:0.00:0:0:.:160,0:0:4
chr1 38186365 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.61;TLOD=4.44 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:32,3:0.065:3:0:0.00:1274,103:15:17 0/0:62,0:0.00:0:0:.:2462,0:30:32
chr1 39758993 rs6688708 C G . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=12.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.750:0:4:1.00:40,132:0:1 0/0:4,0:0.00:0:0:.:164,0:3:1
chr1 40799236 rs1826952 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:1:2:0.667:97,108:2:1 0/0:4,0:0.00:0:0:.:134,0:1:3
chr1 41153981 . G A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,74:0:0 0/0:5,0:0.00:0:0:.:196,0:0:5
chr1 42414566 . C G . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=4.63 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:18,2:0.154:0:2:1.00:719,72:6:12 0/0:17,0:0.00:0:0:.:669,0:9:8
chr1 42414713 rs200395286 G T . alt_allele_in_normal;germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.794;TLOD=4.67 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,3:0.222:0:3:0.00:270,105:2:5 0/0:19,1:0.059:1:0:1.00:714,38:9:10
chr1 42581768 rs12044547 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=8.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:3:0:1.00:0,121:0:0 0/0:4,0:0.00:0:0:.:153,0:1:3
chr1 43322913 rs76593914 C T . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=12.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:3:1:0.250:0,151:0:0 0/0:4,0:0.00:0:0:.:163,0:2:2
chr1 44121557 rs2274465 C G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=27.51 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,7:0.700:5:2:0.286:152,269:3:1 0/0:6,0:0.00:0:0:.:237,0:3:3
chr1 44713499 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=5.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,2:0.100:2:0:0.00:748,72:9:11 0/0:25,0:0.00:0:0:.:1003,0:14:11
chr1 45407226 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.48;TLOD=7.37 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,4:0.091:3:1:0.750:1502,144:16:24 0/0:29,0:0.00:0:0:.:1027,0:15:14
chr1 45807702 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.09;TLOD=5.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:28,2:0.091:0:2:1.00:1057,74:15:13 0/0:53,0:0.00:0:0:.:2165,0:28:25
chr1 45880970 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.24;TLOD=4.36 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:56,3:0.043:1:2:0.333:2165,103:32:24 0/0:57,0:0.00:0:0:.:2305,0:35:22
chr1 46034288 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.22;TLOD=4.98 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,2:0.105:2:0:1.00:795,68:13:7 0/0:30,0:0.00:0:0:.:1220,0:15:15
chr1 46496940 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.76;TLOD=4.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:56,4:0.048:1:3:0.750:2141,122:27:29 0/0:76,0:0.00:0:0:.:3017,0:31:45
chr1 47207997 rs1971519 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.667:2:1:0.667:37,106:0:1 0/0:5,0:0.00:0:0:.:188,0:4:1
chr1 48102121 rs931937 T C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,74:0:0 0/0:4,0:0.00:0:0:.:147,0:2:2
chr1 51425293 rs144699454 CCA C . alt_allele_in_normal;str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.85;RPA=8,7;RU=CA;STR;TLOD=5.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:38,4:0.091:1:3:.:1475,159:21:17 0/0:36,1:0.033:0:1:.:1467,32:19:17
chr1 53600283 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.52;TLOD=6.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:12,2:0.167:0:2:1.00:451,74:7:5 0/0:18,0:0.00:0:0:.:744,0:9:9
chr1 55379332 rs74361633 G A . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar DB;ECNT=5;HCNT=16;MAX_ED=72;MIN_ED=17;NLOD=2.41;TLOD=4.26 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,2:0.143:1:1:0.500:486,77:6:8 0/0:9,0:0.00:0:0:.:346,0:4:5
chr1 55379349 . A AT . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar ECNT=5;HCNT=16;MAX_ED=72;MIN_ED=17;NLOD=1.81;TLOD=5.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:12,2:0.154:1:1:.:429,72:5:7 0/0:8,0:0.00:0:0:.:315,0:3:5
chr1 55379383 rs74459621 G C . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=5;HCNT=16;MAX_ED=72;MIN_ED=17;NLOD=1.51;TLOD=9.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:10,2:0.273:1:1:0.500:0|1:55379383_G_C:394,82:3:7 0/0:6,0:0.00:0:0:.:0|1:55379383_G_C:242,0:2:4
chr1 55379392 rs77726500 G T . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=5;HCNT=16;MAX_ED=72;MIN_ED=17;NLOD=0.903;TLOD=6.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:10,3:0.200:2:1:0.667:0|1:55379383_G_C:384,113:3:7 0/0:4,0:0.00:0:0:.:0|1:55379383_G_C:141,0:1:3
chr1 55379404 . G A . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar ECNT=5;HCNT=16;MAX_ED=72;MIN_ED=17;NLOD=1.20;TLOD=4.68 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,3:0.222:2:1:0.667:312,116:4:4 0/0:5,0:0.00:0:0:.:191,0:2:3
chr1 63788770 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=15.65;TLOD=4.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:60,3:0.045:1:2:0.333:2350,107:33:27 0/0:70,0:0.00:0:0:.:2838,0:35:35
chr1 67534688 . T A . germline_risk;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,74:0:0 0/0:4,0:0.00:0:0:.:155,0:4:0
chr1 70650518 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.99;TLOD=5.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:31,4:0.080:2:2:0.500:1171,162:15:16 0/0:44,0:0.00:0:0:.:1722,0:21:23
chr1 76235001 rs1826978 A G . germline_risk DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=11.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,3:0.429:2:1:0.333:170,119:0:5 0/0:7,0:0.00:0:0:.:248,0:2:5
chr1 76878156 rs17098942 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=35.76 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,10:0.750:5:5:0.500:159,380:1:3 0/0:12,0:0.00:0:0:.:467,0:7:5
chr1 88906450 rs60331955 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.73 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.750:3:0:0.00:51,91:2:0 0/0:4,0:0.00:0:0:.:154,0:3:1
chr1 89077699 rs10923115 T C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,67:0:0 0/0:4,0:0.00:0:0:.:149,0:0:4
chr1 89465283 rs141660228 G GTTCC . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.616;RPA=5,6;RU=TTCC;STR;TLOD=12.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.750:2:1:.:41,99:0:1 0/0:2,0:0.00:0:0:.:70,0:1:1
chr1 91685807 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.52;TLOD=5.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:22,4:0.105:4:0:1.00:849,142:12:10 0/0:20,0:0.00:0:0:.:815,0:14:6
chr1 95407113 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,77:0:0 0/0:4,0:0.00:0:0:.:157,0:4:0
chr1 107081167 rs2764701 A G . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=10.36 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.600:3:0:0.00:112,104:3:0 0/0:4,0:0.00:0:0:.:157,0:0:4
chr1 109814295 rs201030395 G A . t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=18.01;TLOD=4.71 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:88,3:0.032:0:3:0.00:3119,106:46:42 0/0:69,0:0.00:0:0:.:2671,0:27:42
chr1 110618908 . C A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,74:0:0 0/0:6,0:0.00:0:0:.:241,0:4:2
chr1 111059812 rs368922210 CGA C . alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.52;RPA=9,8;RU=GA;STR;TLOD=5.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,3:0.231:3:0:.:445,120:7:6 0/0:21,1:0.056:0:1:.:760,34:12:9
chr1 111437176 rs5777031 G GA . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.41;RPA=4,5;RU=A;STR;TLOD=18.06 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,9:0.700:8:1:.:119,346:0:3 0/0:10,0:0.00:0:0:.:403,0:6:4
chr1 111984784 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=4.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:30,2:0.077:0:2:0.00:1106,70:11:19 0/0:21,0:0.00:0:0:.:849,0:9:12
chr1 113993349 rs189274062 G T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=6.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.400:2:0:1.00:157,74:3:1 0/0:9,0:0.00:0:0:.:371,0:7:2
chr1 115302495 . G A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,72:0:0 0/0:4,0:0.00:0:0:.:153,0:2:2
chr1 120612002 rs372504208 CGG C . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=5;MAX_ED=38;MIN_ED=38;NLOD=15.92;RPA=4,2;RU=G;STR;TLOD=19.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:152,12:0.068:8:4:.:5329,386:59:93 0/0:132,8:0.052:3:5:.:4840,299:59:73
chr1 120612040 . T TCCGCCGCCGCCGCCG . alt_allele_in_normal;clustered_events;triallelic_site ECNT=2;HCNT=2;MAX_ED=38;MIN_ED=38;NLOD=9.30;RPA=6,11;RU=CCG;STR;TLOD=25.54 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:130,9:0.056:4:1:.:4036,184:47:63 0/0:106,4:0.029:2:0:.:3181,62:39:47
chr1 121484384 . A T . PASS ECNT=1;HCNT=20;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=6.74 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,1:0.182:1:0:0.00:296,29:6:2 0/0:17,0:0.00:0:0:.:658,0:9:8
chr1 121484650 . A AAACACATTCAGCG . germline_risk;triallelic_site ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=4.72;TLOD=12.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,7:0.063:0:2:.:842,71:9:13 0/0:30,1:0.00:0:0:.:1019,0:8:18
chr1 121484852 rs28838403 G A . alt_allele_in_normal;clustered_events DB;ECNT=5;HCNT=2;MAX_ED=28;MIN_ED=6;NLOD=7.96;TLOD=15.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:51,8:0.115:5:3:0.625:1947,299:23:28 0/0:44,2:0.025:2:0:1.00:1767,75:30:14
chr1 121484858 rs28861668 A T . alt_allele_in_normal;clustered_events;germline_risk DB;ECNT=5;HCNT=5;MAX_ED=28;MIN_ED=6;NLOD=2.14;TLOD=18.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:49,9:0.125:5:4:0.444:1776,327:22:27 0/0:44,2:0.054:1:1:0.500:1662,80:31:13
chr1 121484864 rs55680646 A G . alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar DB;ECNT=5;HCNT=3;MAX_ED=28;MIN_ED=6;NLOD=2.74;TLOD=5.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:54,3:0.040:2:1:0.333:0|1:121484864_A_G:2081,113:27:27 0/0:42,2:0.051:0:2:1.00:0|1:121484864_A_G:1683,83:30:12
chr1 121484865 rs28793690 G C . alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar DB;ECNT=5;HCNT=3;MAX_ED=28;MIN_ED=6;NLOD=2.41;TLOD=5.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:56,3:0.043:2:1:0.667:0|1:121484864_A_G:2108,119:28:28 0/0:42,2:0.056:0:2:0.00:0|1:121484864_A_G:1667,84:29:12
chr1 121484880 rs2128557 T A . clustered_events;homologous_mapping_event DB;ECNT=5;HCNT=8;MAX_ED=28;MIN_ED=6;NLOD=9.88;TLOD=7.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:41,2:0.130:0:2:0.00:877,75:11:13 0/0:34,0:0.00:0:0:.:1083,0:18:10
chr1 121485012 rs28826338 A C . alt_allele_in_normal DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.17;TLOD=7.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:39,3:0.081:2:1:0.333:1373,124:15:24 0/0:53,2:0.022:2:0:0.00:1965,82:26:27
chr1 121485037 rs4115048 A T . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=6;HCNT=2;MAX_ED=141;MIN_ED=103;NLOD=4.47;TLOD=5.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,2:0.056:0:2:1.00:1364,67:16:21 0/0:53,2:0.044:2:0:0.00:1935,82:27:26
chr1 121485140 rs36174284 C T . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=6;HCNT=2;MAX_ED=141;MIN_ED=103;NLOD=17.47;TLOD=4.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:158,5:0.014:3:2:0.400:5509,174:81:77 0/0:142,8:0.038:4:4:0.500:5145,310:69:73
chr1 121485152 rs4092802 C G . alt_allele_in_normal;clustered_events DB;ECNT=6;HCNT=1;MAX_ED=141;MIN_ED=103;NLOD=29.85;TLOD=8.79 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:164,7:0.028:0:7:1.00:6489,275:88:76 0/0:161,7:0.027:2:5:0.714:6445,290:80:81
chr1 121485161 rs4788286 C T . alt_allele_in_normal;clustered_events DB;ECNT=6;HCNT=1;MAX_ED=141;MIN_ED=103;NLOD=36.75;TLOD=15.96 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:177,10:0.038:4:6:0.600:0|1:121485161_C_T:6857,376:91:86 0/0:168,6:0.020:4:2:0.333:0|1:121485161_C_T:6625,228:82:86
chr1 121485172 rs4787623 C G . alt_allele_in_normal;clustered_events DB;ECNT=6;HCNT=1;MAX_ED=141;MIN_ED=103;NLOD=38.56;TLOD=22.14 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:184,12:0.049:4:8:0.667:0|1:121485161_C_T:7101,479:95:89 0/0:181,6:0.019:4:2:0.333:0|1:121485161_C_T:7279,254:91:90
chr1 121485178 rs4088684 G C . alt_allele_in_normal;clustered_events DB;ECNT=6;HCNT=1;MAX_ED=141;MIN_ED=103;NLOD=39.16;TLOD=18.98 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:189,12:0.043:4:8:0.333:0|1:121485161_C_T:7464,476:96:93 0/0:186,6:0.019:4:2:0.667:0|1:121485161_C_T:7598,220:95:91
chr1 142598092 rs143430952 G A . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=10.73 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.500:2:2:0.500:118,141:2:1 0/0:7,0:0.00:0:0:.:286,0:2:5
chr1 142611593 rs74621041 A G . germline_risk DB;ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:1:2:0.667:111,115:1:2 0/0:5,0:0.00:0:0:.:172,0:5:0
chr1 142799627 rs77040662 T C . alt_allele_in_normal;clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=17;MIN_ED=17;NLOD=5.49;TLOD=13.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:28,7:0.179:6:1:0.857:1043,246:18:10 0/0:75,5:0.048:5:0:1.00:2999,203:36:39
chr1 142799644 . T C . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=2;HCNT=3;MAX_ED=17;MIN_ED=17;NLOD=9.60;TLOD=6.21 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:36,3:0.100:1:2:0.333:1201,94:24:12 0/0:73,3:0.034:3:0:1.00:2758,104:37:36
chr1 142799795 . C A . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.35;TLOD=5.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,2:0.200:2:0:0.00:324,65:6:2 0/0:26,1:0.043:0:1:1.00:1048,38:10:16
chr1 143192829 rs201173950 G T . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=3;HCNT=8;MAX_ED=37;MIN_ED=23;NLOD=0.602;TLOD=6.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,63:0:0 0/0:2,0:0.00:0:0:.:74,0:2:0
chr1 143192852 rs61784894 T C . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar DB;ECNT=3;HCNT=12;MAX_ED=37;MIN_ED=23;NLOD=0.602;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,75:0:0 0/0:3,0:0.00:0:0:.:115,0:3:0
chr1 143192866 . C T . clustered_events;germline_risk;homologous_mapping_event ECNT=3;HCNT=12;MAX_ED=37;MIN_ED=23;NLOD=0.602;TLOD=6.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.667:3:0:0.00:35,111:0:1 0/0:3,0:0.00:0:0:.:117,0:3:0
chr1 143213148 rs201201558 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=6.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.500:1:1:0.500:152,68:2:2 0/0:7,0:0.00:0:0:.:276,0:5:2
chr1 143488298 . G A . clustered_events;germline_risk;homologous_mapping_event ECNT=3;HCNT=2;MAX_ED=32;MIN_ED=5;NLOD=0.903;TLOD=13.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:1:2:0.333:0|1:143488298_G_A:0,112:0:0 0/0:3,0:0.00:0:0:.:0|1:143488298_G_A:104,0:1:2
chr1 143488303 rs200665854 T C . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=3;HCNT=2;MAX_ED=32;MIN_ED=5;NLOD=0.903;TLOD=13.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:1:2:0.333:0|1:143488298_G_A:0,121:0:0 0/0:3,0:0.00:0:0:.:0|1:143488298_G_A:112,0:1:2
chr1 143488330 . G A . clustered_events;germline_risk;homologous_mapping_event ECNT=3;HCNT=2;MAX_ED=32;MIN_ED=5;NLOD=1.51;TLOD=15.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,6:1.00:2:4:0.333:0,224:0:0 0/0:7,0:0.00:0:0:.:281,0:3:4
chr1 143488437 . A G . clustered_events ECNT=2;HCNT=1;MAX_ED=6;MIN_ED=6;NLOD=2.41;TLOD=18.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,6:1.00:1:5:0.833:0|1:143488437_A_G:0,238:0:0 0/0:12,0:0.00:0:0:.:0|1:143488437_A_G:469,0:7:5
chr1 143488443 . T A . clustered_events ECNT=2;HCNT=1;MAX_ED=6;MIN_ED=6;NLOD=2.41;TLOD=18.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,6:1.00:1:5:0.167:0|1:143488437_A_G:0,231:0:0 0/0:11,0:0.00:0:0:.:0|1:143488437_A_G:420,0:7:4
chr1 144018109 . C T . clustered_events;germline_risk ECNT=2;HCNT=1;MAX_ED=25;MIN_ED=25;NLOD=1.20;TLOD=6.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:8,4:0.200:2:2:0.500:0|1:144018109_C_T:308,142:6:2 0/0:4,0:0.00:0:0:.:0|1:144018109_C_T:164,0:3:1
chr1 144018134 rs138141050 G A . clustered_events;germline_risk DB;ECNT=2;HCNT=1;MAX_ED=25;MIN_ED=25;NLOD=1.51;TLOD=6.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:11,4:0.167:2:2:0.500:0|1:144018109_C_T:371,150:6:5 0/0:6,0:0.00:0:0:.:0|1:144018109_C_T:177,0:3:3
chr1 144828776 . C A . alt_allele_in_normal ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=14.62;TLOD=13.68 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:89,9:0.090:5:4:0.444:3421,322:52:37 0/0:108,5:0.032:1:4:0.800:4235,192:51:57
chr1 144855782 rs71246352 C T . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.82 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.667:0:4:1.00:70,156:0:2 0/0:4,0:0.00:0:0:.:154,0:4:0
chr1 144891147 rs76879485 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=6.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,3:0.222:0:3:0.00:283,118:6:2 0/0:12,0:0.00:0:0:.:478,0:5:7
chr1 144892728 rs1698707 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=6.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,2:0.200:2:0:0.00:312,74:2:6 0/0:6,0:0.00:0:0:.:241,0:2:4
chr1 145038177 rs3978571 T C . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,2:0.333:1:1:0.500:187,80:1:4 0/0:4,0:0.00:0:0:.:158,0:3:1
chr1 145075439 rs2590073 G A . t_lod_fstar DB;ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=6.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,2:0.200:1:1:0.500:304,74:3:6 0/0:9,0:0.00:0:0:.:302,0:4:5
chr1 145090354 rs12404704 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:41,75:1:0 0/0:4,0:0.00:0:0:.:154,0:3:1
chr1 145104075 rs4145928 G A . alt_allele_in_normal DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.48;TLOD=10.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,5:0.182:4:1:0.800:715,166:11:8 0/0:42,2:0.051:2:0:1.00:1700,73:23:19
chr1 145115556 rs7545073 A C . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=14.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,5:0.500:2:3:0.600:173,191:1:4 0/0:4,0:0.00:0:0:.:147,0:3:1
chr1 145209012 . G A . alt_allele_in_normal ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.01;TLOD=18.27 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,6:0.240:1:5:0.167:884,214:9:14 0/0:33,1:0.033:1:0:1.00:1348,39:17:16
chr1 145230168 rs111590337 A G . germline_risk DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=10.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.600:3:1:0.250:71,146:1:1 0/0:5,0:0.00:0:0:.:194,0:2:3
chr1 145267038 rs61813200 G A . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=73;MIN_ED=73;NLOD=1.50;TLOD=6.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,2:0.250:1:1:0.500:302,73:5:4 0/0:7,0:0.00:0:0:.:255,0:6:1
chr1 145267111 rs139270975 A G . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=73;MIN_ED=73;NLOD=1.51;TLOD=5.70 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,1:0.333:1:0:0.00:265,40:6:1 0/0:5,0:0.00:0:0:.:201,0:4:1
chr1 145293469 rs6671324 G C . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=7;MAX_ED=21;MIN_ED=21;NLOD=20.00;TLOD=59.54 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:275,31:0.083:21:10:0.677:0|1:145293469_G_C:9588,1208:117:158 0/0:242,17:0.045:8:9:0.471:0|1:145293469_G_C:8898,676:110:132
chr1 145293490 rs6671335 G C . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=7;MAX_ED=21;MIN_ED=21;NLOD=19.42;TLOD=55.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:294,29:0.073:19:10:0.655:0|1:145293469_G_C:11428,1117:134:160 0/0:257,17:0.047:9:8:0.529:0|1:145293469_G_C:10358,702:115:142
chr1 145293667 rs6689039 T G . alt_allele_in_normal DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=14.03;TLOD=10.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:90,8:0.060:4:4:0.500:3154,315:51:39 0/0:119,6:0.037:2:4:0.333:4362,241:48:71
chr1 145302621 rs201611932 C T . alt_allele_in_normal;germline_risk DB;ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=4.12;TLOD=9.26 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:42,4:0.111:2:2:0.500:1619,157:25:17 0/0:56,6:0.080:1:5:0.833:2232,232:32:24
chr1 145368456 . G C . alt_allele_in_normal ECNT=1;HCNT=15;MAX_ED=.;MIN_ED=.;NLOD=19.10;TLOD=15.91 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:276,18:0.053:13:5:0.722:10740,719:146:130 0/0:228,16:0.054:9:7:0.563:9105,653:126:102
chr1 145368695 . G C . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=5;HCNT=12;MAX_ED=65;MIN_ED=4;NLOD=33.15;TLOD=4.61 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:136,4:0.017:4:0:1.00:0|1:145368695_G_C:5283,156:77:59 0/0:142,4:0.016:1:3:0.250:0|1:145368695_G_C:5644,149:68:74
chr1 145368699 . T G . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=5;HCNT=12;MAX_ED=65;MIN_ED=4;NLOD=28.78;TLOD=4.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:131,4:0.017:4:0:1.00:0|1:145368695_G_C:4660,158:76:55 0/0:144,2:0.016:0:2:0.00:0|1:145368695_G_C:5354,76:69:75
chr1 145368707 . A G . clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar ECNT=5;HCNT=12;MAX_ED=65;MIN_ED=4;NLOD=34.62;TLOD=4.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:118,3:0.019:3:0:0.00:0|1:145368695_G_C:4241,118:67:51 0/0:133,1:0.00:0:1:1.00:0|1:145368695_G_C:5041,39:66:67
chr1 145368757 . G C . clustered_events;homologous_mapping_event;t_lod_fstar ECNT=5;HCNT=12;MAX_ED=65;MIN_ED=4;NLOD=18.36;TLOD=5.24 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:60,3:0.035:2:1:0.667:0|1:145368757_G_C:2271,119:32:28 0/0:66,0:0.00:0:0:.:0|1:145368757_G_C:2592,0:31:35
chr1 145368760 . C T . clustered_events;homologous_mapping_event;t_lod_fstar ECNT=5;HCNT=12;MAX_ED=65;MIN_ED=4;NLOD=18.06;TLOD=5.27 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:58,3:0.036:2:1:0.333:0|1:145368757_G_C:2228,108:30:28 0/0:64,0:0.00:0:0:.:0|1:145368757_G_C:2636,0:32:32
chr1 145457039 . CTCT C . str_contraction ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;RPA=5,4;RU=TCT;STR;TLOD=6.54 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,4:0.222:0:4:.:275,155:1:6 0/0:14,0:0.00:0:0:.:553,0:6:8
chr1 148004625 rs144324257 C A . alt_allele_in_normal DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=2.67;TLOD=7.71 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:97,10:0.076:4:6:0.600:3463,392:68:29 0/0:120,11:0.068:5:6:0.545:4402,447:65:55
chr1 148004903 . T A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.11;TLOD=5.68 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,2:0.118:2:0:1.00:541,74:8:7 0/0:17,0:0.00:0:0:.:609,0:9:8
chr1 148010217 rs368282400 A G . clustered_events;germline_risk;multi_event_alt_allele_in_normal DB;ECNT=2;HCNT=1;MAX_ED=9;MIN_ED=9;NLOD=2.71;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:0|1:148010217_A_G:37,82:0:1 0/0:113,1:0.00:0:1:1.00:0|1:148010217_A_G:4302,41:57:56
chr1 148010226 rs372351056 C T . clustered_events;germline_risk;multi_event_alt_allele_in_normal DB;ECNT=2;HCNT=1;MAX_ED=9;MIN_ED=9;NLOD=2.71;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:0|1:148010217_A_G:40,74:0:1 0/0:118,1:0.00:0:1:1.00:0|1:148010217_A_G:4825,38:61:57
chr1 148343676 rs201764083 G T . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=2;MAX_ED=13;MIN_ED=3;NLOD=9.95;TLOD=9.46 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:27,3:0.115:3:0:1.00:0|1:148343676_G_T:1089,115:16:11 0/0:68,3:0.033:1:2:0.333:0|1:148343676_G_T:2706,123:33:35
chr1 148343679 rs202114775 C T . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=2;MAX_ED=13;MIN_ED=3;NLOD=15.05;TLOD=9.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:28,3:0.111:3:0:0.00:0|1:148343676_G_T:1013,109:17:11 0/0:66,3:0.031:1:2:0.667:0|1:148343676_G_T:2448,113:31:35
chr1 148343689 rs186242932 A G . clustered_events;homologous_mapping_event;t_lod_fstar DB;ECNT=3;HCNT=2;MAX_ED=13;MIN_ED=3;NLOD=15.05;TLOD=5.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:30,2:0.080:2:0:0.00:0|1:148343676_G_T:1134,78:17:13 0/0:74,0:0.00:0:0:.:0|1:148343676_G_T:2824,0:35:39
chr1 148579473 rs371667280 G T . PASS DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=6.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:2:0:1.00:34,70:0:1 0/0:33,0:0.00:0:0:.:1320,0:17:16
chr1 148853791 . G A . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=5;HCNT=14;MAX_ED=58;MIN_ED=31;NLOD=4.80;TLOD=4.79 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:63,3:0.034:0:3:0.00:2065,104:38:25 0/0:86,5:0.050:2:3:0.400:2931,191:39:47
chr1 148853822 . G A . alt_allele_in_normal;clustered_events;triallelic_site ECNT=5;HCNT=21;MAX_ED=58;MIN_ED=31;NLOD=8.00;TLOD=23.98 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:91,11:0.099:7:4:0.636:0|1:148853822_G_A:3287,397:49:36 0/0:113,8:0.048:3:5:0.375:0|1:148853822_G_A:4461,269:50:62
chr1 148853828 rs375590231 G C . alt_allele_in_normal;clustered_events DB;ECNT=5;HCNT=18;MAX_ED=58;MIN_ED=31;NLOD=13.91;TLOD=19.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:105,12:0.085:3:9:0.250:4079,412:61:44 0/0:130,7:0.036:2:5:0.286:5196,263:59:71
chr1 148853846 rs200939878 C T . alt_allele_in_normal;clustered_events DB;ECNT=5;HCNT=21;MAX_ED=58;MIN_ED=31;NLOD=20.79;TLOD=23.68 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:124,10:0.075:6:4:0.400:0|1:148853822_G_A:4805,341:64:60 0/0:156,7:0.030:3:4:0.571:0|1:148853822_G_A:6298,267:71:85
chr1 148853849 . G A . alt_allele_in_normal;clustered_events ECNT=5;HCNT=21;MAX_ED=58;MIN_ED=31;NLOD=21.09;TLOD=23.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:129,10:0.076:6:4:0.600:0|1:148853822_G_A:4948,374:68:61 0/0:161,7:0.030:3:4:0.429:0|1:148853822_G_A:6381,273:73:88
chr1 148889643 rs4950649 T C . clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar DB;ECNT=2;HCNT=4;MAX_ED=35;MIN_ED=35;NLOD=6.59;TLOD=5.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:36,2:0.077:2:0:1.00:1337,82:22:14 0/0:42,1:0.027:1:0:1.00:1644,41:25:17
chr1 148889678 rs4950650 C T . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=2;HCNT=4;MAX_ED=35;MIN_ED=35;NLOD=6.86;TLOD=4.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,3:0.083:3:0:0.00:1342,107:20:15 0/0:45,2:0.028:2:0:0.00:1830,73:29:16
chr1 148903238 . A C . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=2.66;TLOD=5.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:294,12:0.025:5:7:0.583:10209,467:161:133 0/0:285,34:0.081:13:21:0.618:10183,1395:156:129
chr1 149101377 . G A . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=10.19;TLOD=4.56 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:32,3:0.074:3:0:1.00:1235,100:10:22 0/0:43,0:0.00:0:0:.:1697,0:12:31
chr1 149676264 rs199745503 T C . alt_allele_in_normal DB;ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=10.77;TLOD=16.07 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:199,17:0.071:8:9:0.471:6588,636:94:105 0/0:224,19:0.069:11:8:0.579:7950,784:119:105
chr1 149904112 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=11.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:21,6:0.182:1:5:0.167:795,211:10:11 0/0:20,0:0.00:0:0:.:804,0:12:8
chr1 150414408 . C T . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=9.67 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,4:0.200:1:3:0.750:473,153:5:9 0/0:15,0:0.00:0:0:.:491,0:9:6
chr1 150471203 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.01;TLOD=4.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:62,3:0.042:2:1:0.667:2390,106:34:28 0/0:74,0:0.00:0:0:.:3004,0:44:30
chr1 151105631 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.20;TLOD=4.47 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:63,4:0.038:0:4:0.00:2462,143:35:28 0/0:58,0:0.00:0:0:.:2355,0:25:33
chr1 151554167 rs368431369 G A . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.13;TLOD=4.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:46,2:0.059:2:0:1.00:1588,65:28:18 0/0:34,0:0.00:0:0:.:1304,0:15:19
chr1 151773565 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.25;TLOD=4.21 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:70,3:0.032:2:1:0.333:2679,101:45:25 0/0:61,0:0.00:0:0:.:2478,0:39:22
chr1 151786281 rs3828058 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,5:0.364:3:2:0.600:368,147:4:5 0/0:4,0:0.00:0:0:.:166,0:1:3
chr1 151811107 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=5.94 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,2:0.286:1:1:0.500:191,68:2:3 0/0:23,0:0.00:0:0:.:851,0:15:8
chr1 152187628 rs75639578 A G . alt_allele_in_normal DB;ECNT=1;HCNT=29;MAX_ED=.;MIN_ED=.;NLOD=64.88;TLOD=15.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:232,15:0.042:9:6:0.400:8361,531:109:123 0/0:647,34:0.032:25:9:0.265:24044,1201:349:298
chr1 152188118 . C T . alt_allele_in_normal ECNT=1;HCNT=10;MAX_ED=.;MIN_ED=.;NLOD=25.58;TLOD=47.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:366,35:0.078:15:20:0.571:13017,1211:190:176 0/0:459,34:0.047:19:15:0.441:16884,1251:234:225
chr1 152188961 rs76879172 C T . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=67.34;TLOD=5.94 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:255,13:0.033:3:10:0.769:8891,413:124:131 0/0:662,45:0.048:19:26:0.578:23800,1629:325:337
chr1 152276156 . C T . alt_allele_in_normal;clustered_events ECNT=2;HCNT=9;MAX_ED=126;MIN_ED=126;NLOD=2.86;TLOD=19.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:225,14:0.048:7:7:0.500:8458,505:113:112 0/0:189,16:0.073:11:5:0.313:7422,601:113:76
chr1 152276282 rs55707024 C G . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=2;HCNT=7;MAX_ED=126;MIN_ED=126;NLOD=10.52;TLOD=5.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:195,10:0.037:4:6:0.600:7403,391:96:99 0/0:256,35:0.104:11:24:0.686:10135,1462:139:117
chr1 152280573 rs76471961 C A . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=11;MAX_ED=41;MIN_ED=24;NLOD=13.08;TLOD=12.37 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:221,9:0.025:3:6:0.667:0|1:152280573_C_A:7821,345:97:124 0/0:183,16:0.066:7:9:0.563:0|1:152280573_C_A:6739,634:77:106
chr1 152280597 rs3126077 A G . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=11;MAX_ED=41;MIN_ED=24;NLOD=19.21;TLOD=21.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:230,12:0.039:9:3:0.250:0|1:152280573_C_A:8599,448:101:129 0/0:203,10:0.049:8:2:0.200:0|1:152280573_C_A:8006,393:88:115
chr1 152280614 rs3120645 C G . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=11;MAX_ED=41;MIN_ED=24;NLOD=11.90;TLOD=15.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:245,10:0.029:8:2:0.200:0|1:152280573_C_A:9595,390:109:136 0/0:228,15:0.055:13:2:0.133:0|1:152280573_C_A:9239,598:101:127
chr1 152284597 rs201928359 A C . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=16.94;TLOD=4.06 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:286,7:9.174e-03:5:2:0.286:10318,264:125:161 0/0:277,17:0.051:10:7:0.412:10272,658:140:137
chr1 152975658 rs67156933 AGAGCCAGGCTGTACCAAGGTCCCT A . str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.54;RPA=3,2;RU=GAGCCAGGCTGTACCAAGGTCCCT;STR;TLOD=6.14 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:12,3:0.167:3:0:.:435,117:4:8 0/0:14,0:0.00:0:0:.:515,0:7:7
chr1 153320159 rs2916207 G C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.84 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,2:0.286:0:2:0.00:190,77:3:2 0/0:4,0:0.00:0:0:.:161,0:1:3
chr1 153932767 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.20;TLOD=4.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:63,3:0.036:1:2:0.333:2442,104:25:38 0/0:55,0:0.00:0:0:.:2252,0:29:26
chr1 154541922 . C A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=4.77 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,2:0.067:0:2:1.00:1311,70:13:22 0/0:34,0:0.00:0:0:.:1412,0:15:19
chr1 155202912 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=35.82;TLOD=5.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:130,5:0.026:4:1:0.800:5079,179:59:71 0/0:150,0:0.00:0:0:.:6032,0:76:74
chr1 156263011 rs200151304 CAG C . str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.02;RPA=6,5;RU=AG;STR;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:44,3:0.053:1:2:.:1743,96:16:28 0/0:59,0:0.00:0:0:.:2339,0:28:31
chr1 156438381 . T G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.48;TLOD=4.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,2:0.095:2:0:1.00:576,65:12:7 0/0:26,0:0.00:0:0:.:854,0:12:14
chr1 156524033 rs373751756 G A . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=19.77;TLOD=5.82 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:116,6:0.033:2:4:0.333:4514,208:52:64 0/0:86,0:0.00:0:0:.:3436,0:51:35
chr1 156882355 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.97;TLOD=5.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:56,3:0.043:1:2:0.667:1966,122:29:27 0/0:86,0:0.00:0:0:.:3219,0:43:43
chr1 157512693 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=5.06 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,2:0.067:2:0:0.00:1355,73:11:24 0/0:30,0:0.00:0:0:.:1217,0:13:17
chr1 158066334 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.94;TLOD=4.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:38,3:0.056:3:0:0.00:1380,109:25:13 0/0:49,0:0.00:0:0:.:1817,0:29:20
chr1 158532651 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.04;TLOD=4.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:48,3:0.049:3:0:0.00:1727,107:25:23 0/0:31,0:0.00:0:0:.:1132,0:17:14
chr1 161139951 rs12741203 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=15.22 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.800:2:2:0.500:33,144:1:0 0/0:5,0:0.00:0:0:.:192,0:2:3
chr1 161208254 . AAG A . germline_risk;str_contraction;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.28;RPA=10,9;RU=AG;STR;TLOD=4.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,6:0.190:4:2:.:700,221:7:13 0/0:22,0:0.00:0:0:.:830,0:13:9
chr1 161277225 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=4.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:34,2:0.071:2:0:0.00:1222,65:17:17 0/0:33,0:0.00:0:0:.:1272,0:18:15
chr1 162560360 rs200969167 TTCTC T . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.43;RPA=10,8;RU=TC;STR;TLOD=6.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:21,4:0.105:0:4:.:801,159:11:10 0/0:23,0:0.00:0:0:.:891,0:9:13
chr1 165649676 rs200586555 C T . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.78;TLOD=4.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:26,2:0.077:1:1:0.500:1001,68:18:8 0/0:33,0:0.00:0:0:.:1277,0:21:12
chr1 170387464 . T C . germline_risk;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,73:0:0 0/0:5,0:0.00:0:0:.:199,0:3:2
chr1 171606054 rs12076134 T G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,3:0.375:0:3:0.00:191,122:2:3 0/0:4,0:0.00:0:0:.:167,0:1:3
chr1 173570897 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.21;TLOD=4.36 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:68,4:0.039:2:2:0.500:2575,140:38:30 0/0:69,0:0.00:0:0:.:2708,0:40:29
chr1 175048241 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=5.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,2:0.167:0:2:1.00:374,64:5:5 0/0:16,0:0.00:0:0:.:653,0:11:5
chr1 175092831 . T C . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=22.23;TLOD=4.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:90,3:0.028:3:0:1.00:3328,115:37:53 0/0:95,0:0.00:0:0:.:3574,0:44:51
chr1 175621791 rs2146661 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:1:2:0.667:0,103:0:0 0/0:5,0:0.00:0:0:.:199,0:3:2
chr1 179528879 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.09;TLOD=4.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:48,3:0.056:0:3:0.00:1841,109:26:22 0/0:31,0:0.00:0:0:.:1096,0:11:20
chr1 182993438 rs10911195 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=10.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,4:0.444:3:1:0.750:179,109:1:4 0/0:5,0:0.00:0:0:.:189,0:3:2
chr1 183206546 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=5.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,2:0.087:2:0:1.00:1056,72:17:10 0/0:27,0:0.00:0:0:.:1096,0:20:7
chr1 192486940 rs10921185 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=8.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.667:3:0:0.00:79,116:0:2 0/0:4,0:0.00:0:0:.:156,0:3:1
chr1 193099341 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.18;TLOD=5.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,2:0.125:1:1:0.500:763,76:9:11 0/0:33,0:0.00:0:0:.:1252,0:13:20
chr1 196743927 rs385390 A C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.07 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.500:3:0:0.00:80,106:1:1 0/0:4,0:0.00:0:0:.:159,0:1:3
chr1 197009572 rs182784658 A T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:0:2:1.00:68,70:1:1 0/0:4,0:0.00:0:0:.:148,0:1:3
chr1 197112178 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.98;TLOD=4.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,2:0.061:1:1:0.500:1477,71:19:21 0/0:39,0:0.00:0:0:.:1556,0:23:16
chr1 198704277 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,74:0:0 0/0:17,0:0.00:0:0:.:681,0:7:10
chr1 201177066 . G A . PASS ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=14.75;TLOD=16.71 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:65,10:0.125:8:2:0.800:2272,333:31:34 0/0:56,0:0.00:0:0:.:2097,0:32:24
chr1 201980095 rs60246030 AT A . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.10;TLOD=6.39 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.333:0:2:.:140,47:1:3 0/0:7,0:0.00:0:0:.:261,0:4:3
chr1 202097524 . ACTG A . str_contraction ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=18.93;RPA=7,6;RU=CTG;STR;TLOD=7.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:121,5:0.033:0:5:.:4211,179:57:64 0/0:85,1:0.00:0:1:.:3196,36:35:50
chr1 202756238 rs10920480 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,77:0:0 0/0:4,0:0.00:0:0:.:151,0:2:2
chr1 203690633 rs2275323 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=19.70 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,5:0.556:3:2:0.400:123,201:2:2 0/0:4,0:0.00:0:0:.:138,0:3:1
chr1 207925434 . G A . t_lod_fstar ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=12.04;TLOD=4.39 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:44,2:0.049:0:2:0.00:1723,69:21:23 0/0:44,0:0.00:0:0:.:1743,0:21:23
chr1 209806197 . T G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.84;TLOD=4.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:33,2:0.067:1:1:0.500:1072,66:13:20 0/0:34,0:0.00:0:0:.:1152,0:19:15
chr1 211888042 rs12057678 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,73:0:0 0/0:4,0:0.00:0:0:.:148,0:0:4
chr1 214156514 rs340879 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=14.85 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,5:0.800:1:4:0.200:78,179:0:2 0/0:5,0:0.00:0:0:.:200,0:0:5
chr1 218961110 rs76583447 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=7.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:2:2:0.500:0,145:0:0 0/0:4,0:0.00:0:0:.:154,0:0:4
chr1 223727790 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=10.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,5:0.278:3:2:0.600:565,181:8:7 0/0:11,0:0.00:0:0:.:431,0:5:6
chr1 225111087 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.41;TLOD=4.61 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:75,3:0.036:0:3:0.00:2915,111:37:38 0/0:69,0:0.00:0:0:.:2721,0:35:34
chr1 228401773 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=4.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:26,2:0.071:0:2:1.00:1033,66:17:9 0/0:32,0:0.00:0:0:.:1263,0:18:14
chr1 228675570 rs61827301 G C . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=31.24 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,9:0.667:4:5:0.444:201,353:1:4 0/0:9,0:0.00:0:0:.:381,0:3:6
chr1 228756633 rs374914994 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,72:0:0 0/0:4,0:0.00:0:0:.:159,0:3:1
chr1 230451955 rs368989586 TAC T . germline_risk;str_contraction DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.10;RPA=2,1;RU=AC;STR;TLOD=7.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,1:0.500:1:0:.:72,35:2:0 0/0:11,0:0.00:0:0:.:411,0:1:10
chr1 231126172 rs10864648 T G . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:2:0:1.00:71,74:1:1 0/0:4,0:0.00:0:0:.:155,0:1:3
chr1 232568217 . A G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.67;TLOD=32.37 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:46,19:0.229:9:10:0.526:1591,662:22:24 0/0:76,0:0.00:0:0:.:2824,0:37:39
chr1 233489308 rs6424180 A T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:1:1:0.500:78,72:1:1 0/0:4,0:0.00:0:0:.:166,0:0:4
chr1 233802723 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.53;TLOD=4.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:18,2:0.111:2:0:1.00:695,67:11:7 0/0:29,0:0.00:0:0:.:1184,0:17:12
chr1 235584227 . C A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,74:0:0 0/0:4,0:0.00:0:0:.:169,0:1:3
chr1 235800681 . G A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,78:0:0 0/0:4,0:0.00:0:0:.:153,0:1:3
chr1 236526726 rs61833977 C A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,72:0:0 0/0:4,0:0.00:0:0:.:141,0:2:2
chr1 236645623 rs147249573 C T . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=5.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:44,3:0.054:3:0:0.00:1567,117:31:13 0/0:53,0:0.00:0:0:.:2017,0:28:25
chr1 240011353 rs12402851 C A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.85 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:2:2:0.500:0,144:0:0 0/0:6,0:0.00:0:0:.:225,0:3:3
chr1 244431765 rs505913 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:2:2:0.500:0,139:0:0 0/0:5,0:0.00:0:0:.:164,0:2:3
chr1 245019660 rs141976695 G C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=20.54 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,6:0.714:2:4:0.333:72,242:1:1 0/0:6,0:0.00:0:0:.:240,0:4:2
chr1 247835988 . C T . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.09;TLOD=9.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:42,5:0.103:1:4:0.800:1405,171:26:16 0/0:46,0:0.00:0:0:.:1622,0:24:22
chr1 248167130 . A G . alt_allele_in_normal;clustered_events ECNT=2;HCNT=18;MAX_ED=7;MIN_ED=7;NLOD=7.45;TLOD=33.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:101,14:0.117:6:8:0.571:0|1:248167130_A_G:3866,523:46:55 0/0:86,6:0.060:3:3:0.500:0|1:248167130_A_G:3447,207:36:50
chr1 248167137 rs111503503 G A . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=18;MAX_ED=7;MIN_ED=7;NLOD=9.68;TLOD=31.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:99,12:0.110:6:6:0.500:0|1:248167130_A_G:3782,455:47:52 0/0:85,5:0.051:3:2:0.600:0|1:248167130_A_G:3444,193:38:47
chr1 248224451 . T C . alt_allele_in_normal ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=12.97;TLOD=12.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:85,7:0.073:4:3:0.571:3025,227:41:44 0/0:90,3:0.026:2:1:0.667:3389,124:43:47
chr1 248604365 rs143338137 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=6.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,2:0.286:1:1:0.500:226,73:3:3 0/0:6,0:0.00:0:0:.:247,0:0:6
chr1 248637291 rs1770109 G A . alt_allele_in_normal DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=30.49;TLOD=6.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:240,8:0.021:5:3:0.625:8404,285:111:129 0/0:202,9:0.029:5:4:0.556:7425,321:100:102
chr2 905442 . A ATCCTCCCGGCCTCCTCGCCTGCACTGGGTCTGGTGTTTCATTTCCTCCCAGGGTCCTCGCCTGCACTGGGTCTGGTGTTTCATTTCCTCCCGGCCTCCTCGCCTGCACTGGGTCTGGTGTTTCATT . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.25;TLOD=5.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,0:0.120:0:0:.:805,0:11:13 0/0:29,0:0.040:0:0:.:846,0:15:14
chr2 3730599 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.19;TLOD=5.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:31,4:0.077:0:4:0.00:1168,140:14:17 0/0:44,0:0.00:0:0:.:1678,0:22:22
chr2 9595886 . GGT G . str_contraction;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;RPA=6,5;RU=GT;STR;TLOD=4.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:21,3:0.111:2:1:.:821,117:6:15 0/0:17,0:0.00:0:0:.:667,0:14:3
chr2 11273436 . GCA G . alt_allele_in_normal;str_contraction ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=4.19;RPA=8,7;RU=CA;STR;TLOD=7.11 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:41,7:0.114:2:5:.:1427,238:18:23 0/0:43,2:0.057:0:2:.:1585,84:16:27
chr2 11491849 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.10;TLOD=4.51 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:48,3:0.050:3:0:1.00:1881,109:24:24 0/0:63,0:0.00:0:0:.:2428,0:26:37
chr2 11945335 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=5.24 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:26,3:0.091:0:3:0.00:969,107:13:13 0/0:21,0:0.00:0:0:.:822,0:9:12
chr2 15143000 rs61086509 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.556;TLOD=7.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,2:0.500:2:0:0.00:103,79:0:3 0/0:4,0:0.00:0:0:.:117,0:0:4
chr2 23621412 rs2577753 T A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,3:0.250:1:2:0.333:285,109:5:3 0/0:5,0:0.00:0:0:.:186,0:3:2
chr2 26652534 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=4.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:30,2:0.083:2:0:1.00:1172,70:18:12 0/0:36,0:0.00:0:0:.:1480,0:16:20
chr2 27045097 rs13016101 C T . clustered_events;germline_risk DB;ECNT=2;HCNT=1;MAX_ED=9;MIN_ED=9;NLOD=0.903;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:2:0:0.00:0|1:27045097_C_T:32,70:1:0 0/0:5,0:0.00:0:0:.:0|1:27045097_C_T:186,0:2:3
chr2 27045106 rs12997128 T G . clustered_events;germline_risk DB;ECNT=2;HCNT=1;MAX_ED=9;MIN_ED=9;NLOD=0.903;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:2:0:1.00:0|1:27045097_C_T:31,77:1:0 0/0:4,0:0.00:0:0:.:0|1:27045097_C_T:154,0:1:3
chr2 27305479 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=4.46 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:56,4:0.048:2:2:0.500:2002,145:29:27 0/0:34,0:0.00:0:0:.:1276,0:20:14
chr2 27423113 rs191510120 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=11.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.750:0:4:0.00:29,151:0:1 0/0:6,0:0.00:0:0:.:206,0:2:4
chr2 28615812 rs72195155 GGA G . alt_allele_in_normal;str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.19;RPA=10,9;RU=GA;STR;TLOD=6.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:29,9:0.217:6:3:.:1067,342:15:14 0/0:38,2:0.061:1:1:.:1433,79:19:19
chr2 28804950 . C G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.90;TLOD=5.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:48,5:0.088:3:2:0.400:1848,157:25:23 0/0:62,1:0.00:1:0:0.00:2495,2:36:26
chr2 29708633 . A G . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,78:0:0 0/0:4,0:0.00:0:0:.:153,0:0:4
chr2 30454499 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.09;TLOD=4.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:45,3:0.056:1:2:0.333:1503,107:33:12 0/0:42,0:0.00:0:0:.:1423,0:23:19
chr2 30959465 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.84;TLOD=5.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,2:0.056:0:2:1.00:1546,74:25:15 0/0:39,0:0.00:0:0:.:1542,0:19:20
chr2 37035443 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.84 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,2:0.286:0:2:1.00:219,67:3:3 0/0:6,0:0.00:0:0:.:236,0:3:3
chr2 38997172 rs3112192 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=16.64 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,5:0.800:4:1:0.200:40,199:1:0 0/0:6,0:0.00:0:0:.:231,0:5:1
chr2 39348136 . G A . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=7.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.667:0:3:0.00:32,110:1:0 0/0:9,0:0.00:0:0:.:347,0:2:7
chr2 43451739 . CCTG C . str_contraction ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=14.42;RPA=7,6;RU=CTG;STR;TLOD=14.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:74,7:0.083:2:5:.:2749,275:41:33 0/0:68,0:0.00:0:0:.:2613,0:42:26
chr2 44184528 . T C . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.84;TLOD=5.24 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:31,2:0.091:0:2:0.00:1182,72:17:14 0/0:47,1:0.028:1:0:1.00:1860,2:18:29
chr2 45184928 . G A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,73:0:0 0/0:6,0:0.00:0:0:.:219,0:1:5
chr2 46075488 rs4952783 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=8.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,73:0:0 0/0:4,0:0.00:0:0:.:147,0:0:4
chr2 46835520 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,73:0:0 0/0:5,0:0.00:0:0:.:207,0:2:3
chr2 50464002 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.93;TLOD=4.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:34,3:0.077:0:3:0.00:1386,84:12:22 0/0:45,0:0.00:0:0:.:1878,0:28:17
chr2 52799436 . A G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=12.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,5:0.139:3:2:0.400:1484,165:27:13 0/0:51,0:0.00:0:0:.:1967,0:28:23
chr2 54429173 rs6718204 A T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.16 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.500:2:2:0.500:71,138:2:0 0/0:4,0:0.00:0:0:.:152,0:2:2
chr2 55091223 rs6545450 A C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=10.53 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:3:0:0.00:0,91:0:0 0/0:5,0:0.00:0:0:.:201,0:3:2
chr2 69049725 . GA G . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=19.26;RPA=2,1;RU=A;STR;TLOD=36.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:80,19:0.187:10:9:.:3080,742:42:38 0/0:75,0:0.00:0:0:.:2985,0:40:35
chr2 73194599 rs4852904 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=8.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,77:0:0 0/0:4,0:0.00:0:0:.:159,0:3:1
chr2 74657083 . G A . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=12.60;TLOD=4.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:65,3:0.042:1:2:0.333:2535,104:27:38 0/0:55,0:0.00:0:0:.:2186,0:34:21
chr2 75276448 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=4.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:26,3:0.095:2:1:0.333:992,99:13:13 0/0:20,0:0.00:0:0:.:815,0:6:14
chr2 87576274 rs62145319 C T . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=16;MIN_ED=16;NLOD=0.602;TLOD=7.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:5,2:0.333:1:1:0.500:0|1:87576274_C_T:191,71:3:2 0/0:2,0:0.00:0:0:.:0|1:87576274_C_T:61,0:0:2
chr2 87576290 rs79024513 A T . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=16;MIN_ED=16;NLOD=0.602;TLOD=7.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:5,2:0.333:1:1:0.500:0|1:87576274_C_T:164,75:3:2 0/0:2,0:0.00:0:0:.:0|1:87576274_C_T:75,0:0:2
chr2 89028865 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=10.84;TLOD=4.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:42,3:0.061:0:3:1.00:1636,101:14:28 0/0:49,0:0.00:0:0:.:1977,0:23:26
chr2 89104882 rs4020366 C A . alt_allele_in_normal DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=4.34;TLOD=18.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,10:0.229:6:4:0.400:1394,365:19:16 0/0:58,4:0.049:1:3:0.750:2234,148:25:33
chr2 89104959 rs1854389 T C . t_lod_fstar DB;ECNT=1;HCNT=22;MAX_ED=.;MIN_ED=.;NLOD=13.24;TLOD=4.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:44,4:0.094:2:2:0.500:1654,146:26:18 0/0:68,0:0.00:0:0:.:2704,0:32:36
chr2 89399448 . G A . alt_allele_in_normal;clustered_events ECNT=6;HCNT=26;MAX_ED=47;MIN_ED=7;NLOD=7.60;TLOD=7.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:131,5:0.028:1:4:0.200:0|1:89399448_G_A:4465,178:78:53 0/0:104,7:0.050:2:5:0.286:0|1:89399448_G_A:3854,272:38:66
chr2 89399455 rs193208674 T C . alt_allele_in_normal;clustered_events DB;ECNT=6;HCNT=26;MAX_ED=47;MIN_ED=7;NLOD=8.81;TLOD=7.47 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:139,5:0.026:1:4:0.200:0|1:89399448_G_A:5326,191:84:55 0/0:111,7:0.048:2:5:0.286:0|1:89399448_G_A:4429,289:35:76
chr2 89399457 . T G . alt_allele_in_normal;clustered_events ECNT=6;HCNT=26;MAX_ED=47;MIN_ED=7;NLOD=8.50;TLOD=7.47 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:139,5:0.026:1:4:0.200:0|1:89399448_G_A:4985,202:84:55 0/0:114,7:0.049:2:5:0.286:0|1:89399448_G_A:4322,298:35:79
chr2 89399474 . G C . alt_allele_in_normal;clustered_events ECNT=6;HCNT=26;MAX_ED=47;MIN_ED=7;NLOD=4.31;TLOD=7.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:145,6:0.026:1:5:0.167:0|1:89399448_G_A:5736,235:85:60 0/0:113,8:0.058:3:5:0.375:0|1:89399448_G_A:4632,335:37:76
chr2 89399478 . A T . alt_allele_in_normal;clustered_events ECNT=6;HCNT=26;MAX_ED=47;MIN_ED=7;NLOD=4.00;TLOD=7.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:142,6:0.027:1:5:0.833:0|1:89399448_G_A:5127,221:84:58 0/0:115,8:0.058:3:5:0.625:0|1:89399448_G_A:4417,312:38:77
chr2 89399495 . T G . alt_allele_in_normal;clustered_events;germline_risk ECNT=6;HCNT=26;MAX_ED=47;MIN_ED=7;NLOD=0.709;TLOD=10.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:156,7:0.032:2:5:0.286:0|1:89399448_G_A:5612,275:92:64 0/0:115,9:0.065:4:5:0.444:0|1:89399448_G_A:4367,365:42:73
chr2 90414085 . C T . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=33;MAX_ED=.;MIN_ED=.;NLOD=5.46;TLOD=5.49 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:48,3:0.047:1:2:0.667:1791,101:21:27 0/0:65,4:0.048:1:3:0.750:2665,150:36:29
chr2 90453418 . ACATT A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:.:0,72:0:0 0/0:3,0:0.00:0:0:.:106,0:3:0
chr2 91781111 rs376158309 A T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=7.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.500:3:0:0.00:74,120:1:1 0/0:6,0:0.00:0:0:.:227,0:4:2
chr2 91795573 rs77931968 G A . alt_allele_in_normal DB;ECNT=1;HCNT=20;MAX_ED=.;MIN_ED=.;NLOD=4.02;TLOD=11.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:248,11:0.031:4:7:0.364:8781,410:131:117 0/0:229,21:0.071:12:9:0.571:8381,761:113:116
chr2 91800151 . C T . alt_allele_in_normal ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=15.39;TLOD=14.92 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:139,9:0.050:5:4:0.444:4875,343:70:69 0/0:159,8:0.040:6:2:0.250:5899,321:63:96
chr2 91800890 rs9749947 G A . alt_allele_in_normal DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=9.83;TLOD=34.85 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:183,23:0.086:9:14:0.391:7123,778:103:80 0/0:162,12:0.057:4:8:0.333:6544,434:79:83
chr2 91809039 rs1649490 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.76;TLOD=9.71 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,4:0.375:2:2:0.500:162,143:3:2 0/0:7,0:0.00:0:0:.:225,0:3:4
chr2 91846698 rs2939783 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.667:3:0:1.00:40,70:1:0 0/0:4,0:0.00:0:0:.:143,0:1:3
chr2 91872713 . T C . alt_allele_in_normal ECNT=1;HCNT=10;MAX_ED=.;MIN_ED=.;NLOD=4.00;TLOD=31.53 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:309,29:0.068:14:15:0.483:11067,1133:163:146 0/0:365,29:0.068:14:15:0.483:13854,1173:199:166
chr2 91894273 rs371979798 G A . alt_allele_in_normal;germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.74;TLOD=4.56 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,2:0.143:0:2:0.00:510,75:4:9 0/0:23,1:0.045:1:0:1.00:903,38:11:12
chr2 92291504 . A C . clustered_events;germline_risk;t_lod_fstar ECNT=2;HCNT=2;MAX_ED=12;MIN_ED=12;NLOD=2.11;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0|1:92291504_A_C:0,82:0:0 0/0:18,0:0.00:0:0:.:0|1:92291504_A_C:719,0:11:7
chr2 92291516 rs13399894 A G . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=12;MIN_ED=12;NLOD=2.11;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0|1:92291504_A_C:0,74:0:0 0/0:18,0:0.00:0:0:.:0|1:92291504_A_C:640,0:11:7
chr2 95501857 . C T . clustered_events;homologous_mapping_event ECNT=4;HCNT=16;MAX_ED=125;MIN_ED=26;NLOD=5.12;TLOD=7.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,4:0.176:0:4:1.00:704,138:14:6 0/0:23,0:0.00:0:0:.:845,0:17:6
chr2 95501883 . C T . clustered_events;homologous_mapping_event ECNT=4;HCNT=16;MAX_ED=125;MIN_ED=26;NLOD=5.12;TLOD=7.30 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,4:0.176:0:4:1.00:632,141:12:7 0/0:23,0:0.00:0:0:.:851,0:16:7
chr2 95501897 . G A . clustered_events;homologous_mapping_event ECNT=4;HCNT=16;MAX_ED=125;MIN_ED=26;NLOD=4.82;TLOD=7.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,5:0.176:0:5:0.00:680,182:12:7 0/0:23,0:0.00:0:0:.:869,0:17:6
chr2 95501982 rs368341091 T G . alt_allele_in_normal;clustered_events;germline_risk DB;ECNT=4;HCNT=16;MAX_ED=125;MIN_ED=26;NLOD=3.61;TLOD=8.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,4:0.300:0:4:0.00:288,161:2:6 0/0:15,1:0.077:0:1:0.00:546,42:11:4
chr2 96616353 rs150793442 GT G . alt_allele_in_normal;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=3;MAX_ED=2;MIN_ED=2;NLOD=1.20;RPA=2,1;RU=T;STR;TLOD=5.47 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:10,2:0.154:1:1:.:0|1:96616353_GT_G:391,79:8:2 0/0:19,1:0.059:1:0:.:0|1:96616353_GT_G:684,34:12:7
chr2 96616355 rs62154610 T C . germline_risk;multi_event_alt_allele_in_normal;t_lod_fstar DB;ECNT=2;HCNT=3;MAX_ED=2;MIN_ED=2;NLOD=1.50;TLOD=5.47 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:12,2:0.154:1:1:0.500:0|1:96616353_GT_G:438,65:10:2 0/0:19,1:0.056:1:0:1.00:0|1:96616353_GT_G:714,8:12:7
chr2 96774786 rs10183151 T G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=16.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.800:2:2:0.500:35,159:1:0 0/0:4,0:0.00:0:0:.:161,0:3:1
chr2 96964589 rs369732404 C T . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.68;TLOD=4.56 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:33,2:0.074:1:1:0.500:1162,67:15:18 0/0:40,0:0.00:0:0:.:1474,0:21:19
chr2 97749576 rs74366651 C G . alt_allele_in_normal;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=19.93;TLOD=4.56 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:143,5:0.016:1:4:0.800:0|1:97749576_C_G:5152,192:76:67 0/0:160,7:0.032:3:4:0.571:0|1:97749576_C_G:5933,282:95:65
chr2 97749577 rs201493976 G A . alt_allele_in_normal;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=24.13;TLOD=4.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:147,5:0.016:1:4:0.200:0|1:97749576_C_G:4935,185:77:70 0/0:161,7:0.032:3:4:0.429:0|1:97749576_C_G:5862,267:95:66
chr2 97817692 . G T . clustered_events;multi_event_alt_allele_in_normal ECNT=2;HCNT=15;MAX_ED=11;MIN_ED=11;NLOD=5.47;TLOD=10.46 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,5:0.130:0:3:0.00:947,107:12:12 0/0:20,1:0.00:0:0:.:806,0:13:7
chr2 97817703 rs79287744 T C . alt_allele_in_normal;clustered_events;germline_risk DB;ECNT=2;HCNT=30;MAX_ED=11;MIN_ED=11;NLOD=1.52;TLOD=9.76 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:28,3:0.143:0:3:0.00:969,113:12:16 0/0:21,1:0.050:1:0:1.00:784,42:14:7
chr2 97875275 . G T . alt_allele_in_normal;germline_risk ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=1.22;TLOD=17.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:14,5:0.278:3:2:0.600:0|1:97875275_G_T:526,178:10:4 0/0:18,1:0.053:1:0:1.00:0|1:97875275_G_T:740,40:12:6
chr2 97875276 . A G . alt_allele_in_normal;germline_risk ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=1.22;TLOD=17.74 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:13,5:0.263:3:2:0.400:0|1:97875275_G_T:475,194:9:4 0/0:18,1:0.053:1:0:0.00:0|1:97875275_G_T:689,28:12:6
chr2 97882648 rs28404646 G A . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.36;TLOD=11.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,4:0.308:3:1:0.750:314,148:3:7 0/0:10,0:0.00:0:0:.:291,0:5:5
chr2 98162426 rs6761433 A T . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=3;HCNT=2;MAX_ED=7;MIN_ED=6;NLOD=1.81;TLOD=15.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:7,4:0.400:2:2:0.500:0|1:98162426_A_T:249,149:3:4 0/0:6,0:0.00:0:0:.:0|1:98162426_A_T:223,0:2:4
chr2 98162432 rs6707516 T G . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=3;HCNT=2;MAX_ED=7;MIN_ED=6;NLOD=1.51;TLOD=15.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:5,4:0.444:2:2:0.500:0|1:98162426_A_T:165,160:2:3 0/0:4,0:0.00:0:0:.:0|1:98162426_A_T:144,0:2:2
chr2 98162433 rs6761436 A G . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=3;HCNT=2;MAX_ED=7;MIN_ED=6;NLOD=1.20;TLOD=15.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:5,4:0.444:2:2:0.500:0|1:98162426_A_T:187,154:2:3 0/0:3,0:0.00:0:0:.:0|1:98162426_A_T:117,0:2:1
chr2 100118446 rs12478488 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=15.82 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,6:0.800:3:3:0.500:81,224:0:2 0/0:5,0:0.00:0:0:.:201,0:0:5
chr2 103128792 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.84;TLOD=4.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:42,3:0.056:3:0:1.00:1585,105:18:24 0/0:43,0:0.00:0:0:.:1703,0:28:15
chr2 107192469 rs4622714 G C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.333:1:1:0.500:152,71:3:1 0/0:7,0:0.00:0:0:.:263,0:5:2
chr2 108427822 rs920605 A T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=8.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:38,79:1:0 0/0:4,0:0.00:0:0:.:149,0:4:0
chr2 109524183 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.79;TLOD=5.46 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:28,3:0.083:2:1:0.333:1062,108:12:16 0/0:48,0:0.00:0:0:.:1795,0:21:27
chr2 110371441 . G C . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=7.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.667:4:0:1.00:81,127:2:0 0/0:7,0:0.00:0:0:.:269,0:2:5
chr2 110919041 rs3817140 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=12.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.333:0,108:0:0 0/0:4,0:0.00:0:0:.:162,0:4:0
chr2 111118221 . A G . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=8.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,77:0:0 0/0:3,0:0.00:0:0:.:117,0:1:2
chr2 113138213 . G A . germline_risk;t_lod_fstar ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=6.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,2:0.200:2:0:1.00:315,82:4:4 0/0:7,0:0.00:0:0:.:287,0:5:2
chr2 113834885 rs13389457 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.76;TLOD=7.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:0:2:0.00:40,77:1:0 0/0:6,0:0.00:0:0:.:218,0:2:4
chr2 114017282 rs35759685 C CATTA . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;RPA=1,2;RU=ATTA;STR;TLOD=26.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,8:0.700:4:4:.:165,319:0:4 0/0:5,0:0.00:0:0:.:212,0:2:3
chr2 114173904 rs4849217 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.51 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,3:0.167:3:0:1.00:541,110:5:9 0/0:4,0:0.00:0:0:.:167,0:0:4
chr2 114335868 rs139750749 C T . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=2;HCNT=4;MAX_ED=72;MIN_ED=72;NLOD=6.61;TLOD=5.53 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:21,4:0.100:0:4:1.00:673,133:11:10 0/0:56,2:0.024:1:1:0.500:2010,79:40:16
chr2 114335940 . T C . alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar ECNT=2;HCNT=4;MAX_ED=72;MIN_ED=72;NLOD=2.10;TLOD=5.91 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,2:0.167:0:2:0.00:356,77:4:6 0/0:32,2:0.040:2:0:1.00:1155,76:24:8
chr2 114341451 rs8179853 A G . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=8.11 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.600:1:2:0.667:107,115:2:1 0/0:4,0:0.00:0:0:.:153,0:1:3
chr2 114353282 rs375125692 G T . alt_allele_in_normal DB;ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=6.04;TLOD=7.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:64,6:0.063:2:4:0.333:2487,203:35:29 0/0:167,12:0.063:7:5:0.583:6610,445:76:91
chr2 118753006 rs180842481 C T . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.64;TLOD=5.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:32,2:0.077:0:2:1.00:1100,73:17:15 0/0:38,0:0.00:0:0:.:1377,0:18:20
chr2 120980452 . C T . t_lod_fstar ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=16.21;TLOD=4.27 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:87,3:0.030:3:0:0.00:3338,109:49:38 0/0:67,0:0.00:0:0:.:2677,0:37:30
chr2 122489932 rs6726677 C T . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=32;MIN_ED=32;NLOD=1.81;TLOD=7.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:2:0:0.00:27,71:1:0 0/0:7,0:0.00:0:0:.:244,0:4:3
chr2 122489964 rs17006784 C T . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=32;MIN_ED=32;NLOD=0.903;TLOD=6.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:2:0:0.00:26,68:1:0 0/0:3,0:0.00:0:0:.:104,0:2:1
chr2 123421479 . T TTGCTGC . germline_risk ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.644;RPA=11,13;RU=TGC;STR;TLOD=7.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,5:0.400:4:1:.:301,181:5:3 0/0:2,0:0.00:0:0:.:80,0:2:0
chr2 125530477 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=14.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:46,9:0.132:7:2:0.222:1528,344:27:19 0/0:41,0:0.00:0:0:.:1496,0:15:26
chr2 128367261 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=29.20;TLOD=48.63 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:126,25:0.161:9:16:0.640:4736,880:57:69 0/0:114,0:0.00:0:0:.:4534,0:51:63
chr2 128615535 . G A . t_lod_fstar ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=12.94;TLOD=4.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:77,3:0.036:3:0:1.00:2662,106:46:31 0/0:52,0:0.00:0:0:.:1860,0:28:24
chr2 129159242 rs10187302 A G . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=7.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.333:0,95:0:0 0/0:4,0:0.00:0:0:.:161,0:4:0
chr2 129247300 rs11686792 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.902;TLOD=8.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:3:0:1.00:0,95:0:0 0/0:4,0:0.00:0:0:.:129,0:2:2
chr2 130911053 . C A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.63;TLOD=4.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,3:0.080:3:0:0.00:919,105:10:13 0/0:34,0:0.00:0:0:.:1394,0:10:24
chr2 130987344 rs113863640 A G . alt_allele_in_normal;germline_risk DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.14;TLOD=10.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:63,6:0.094:4:2:0.333:2273,225:29:34 0/0:44,2:0.054:0:2:1.00:1700,84:25:19
chr2 131951961 rs1834274 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=14.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,5:0.500:1:4:0.200:238,185:0:6 0/0:9,0:0.00:0:0:.:353,0:3:6
chr2 132861840 rs200381887 G A . alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar DB;ECNT=4;HCNT=2;MAX_ED=18;MIN_ED=5;NLOD=0.918;TLOD=6.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:27,2:0.087:2:0:1.00:0|1:132861840_G_A:1048,73:16:11 0/0:20,1:0.056:1:0:1.00:0|1:132861840_G_A:816,35:6:14
chr2 132861845 rs201204569 G T . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar DB;ECNT=4;HCNT=2;MAX_ED=18;MIN_ED=5;NLOD=0.617;TLOD=6.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:25,2:0.087:2:0:1.00:0|1:132861840_G_A:959,71:14:11 0/0:21,0:0.059:0:0:.:0|1:132861840_G_A:858,0:6:15
chr2 132861848 rs200677021 C T . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar DB;ECNT=4;HCNT=2;MAX_ED=18;MIN_ED=5;NLOD=4.82;TLOD=6.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:25,2:0.091:2:0:0.00:0|1:132861840_G_A:867,73:14:11 0/0:21,0:0.00:0:0:.:0|1:132861840_G_A:776,0:6:15
chr2 132861858 rs200322558 C A . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar DB;ECNT=4;HCNT=2;MAX_ED=18;MIN_ED=5;NLOD=4.82;TLOD=6.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:22,2:0.091:2:0:0.00:0|1:132861840_G_A:824,71:11:11 0/0:21,0:0.00:0:0:.:0|1:132861840_G_A:841,0:6:15
chr2 132911348 rs13415697 C T . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=6.61 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,3:0.333:3:0:0.00:246,79:2:4 0/0:5,0:0.00:0:0:.:205,0:2:3
chr2 133014592 . G A . alt_allele_in_normal;clustered_events ECNT=2;HCNT=10;MAX_ED=27;MIN_ED=27;NLOD=12.05;TLOD=6.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:76,5:0.062:2:3:0.400:2557,184:44:32 0/0:98,5:0.037:2:3:0.400:3543,187:49:49
chr2 133014619 rs78327226 C T . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=4;MAX_ED=27;MIN_ED=27;NLOD=9.09;TLOD=11.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:96,6:0.051:2:4:0.667:3340,166:58:38 0/0:109,6:0.044:2:4:0.667:3982,199:55:54
chr2 133018779 . C A . germline_risk ECNT=2;HCNT=4;MAX_ED=2;MIN_ED=2;NLOD=1.81;TLOD=14.87 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:7,5:0.364:0:5:1.00:0|1:133018779_C_A:279,188:3:4 0/0:6,0:0.00:0:0:.:0|1:133018779_C_A:241,0:1:5
chr2 133018781 . C T . germline_risk ECNT=2;HCNT=4;MAX_ED=2;MIN_ED=2;NLOD=1.81;TLOD=14.87 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:7,5:0.364:0:5:1.00:0|1:133018779_C_A:272,194:3:4 0/0:6,0:0.00:0:0:.:0|1:133018779_C_A:234,0:1:5
chr2 133066724 rs74463227 AGAT A . germline_risk;str_contraction DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;RPA=2,1;RU=GAT;STR;TLOD=14.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,4:0.308:2:2:.:372,145:5:5 0/0:5,0:0.00:0:0:.:174,0:3:2
chr2 134785507 rs6430486 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,63:0:0 0/0:5,0:0.00:0:0:.:200,0:3:2
chr2 135265230 rs615163 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,76:0:0 0/0:5,0:0.00:0:0:.:203,0:3:2
chr2 136656445 rs117151610 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.36;TLOD=10.67 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.600:1:3:0.750:66,145:1:1 0/0:10,0:0.00:0:0:.:304,0:8:2
chr2 138376301 rs138191400 T TA . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.905;RPA=6,7;RU=A;STR;TLOD=5.71 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.500:2:2:.:106,145:3:0 0/0:4,0:0.00:0:0:.:146,0:2:2
chr2 139046069 . C A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.95;TLOD=26.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:32,11:0.265:5:6:0.545:1249,381:15:17 0/0:60,0:0.00:0:0:.:2464,0:28:32
chr2 149837808 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.87;TLOD=5.63 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:21,3:0.111:2:1:0.667:795,114:9:12 0/0:15,0:0.00:0:0:.:573,0:9:6
chr2 152486333 rs147371427 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.400:2:1:0.667:119,104:1:2 0/0:5,0:0.00:0:0:.:189,0:3:2
chr2 160076309 rs11903200 A G . PASS DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=43.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:12,14:0.545:4:10:0.714:421,518:6:6 0/0:10,0:0.00:0:0:.:392,0:1:9
chr2 160938147 rs376821582 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.57;TLOD=9.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,5:0.188:2:3:0.600:573,189:8:8 0/0:15,0:0.00:0:0:.:537,0:8:7
chr2 160994845 rs4473342 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=17.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:3:1:0.250:0,155:0:0 0/0:4,0:0.00:0:0:.:154,0:2:2
chr2 162226838 rs1116173 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,2:0.250:0:2:1.00:210,66:3:3 0/0:4,0:0.00:0:0:.:152,0:2:2
chr2 163292056 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.53;TLOD=4.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:58,4:0.045:2:2:0.500:2099,136:33:25 0/0:44,0:0.00:0:0:.:1669,0:30:14
chr2 164466217 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=15.95;TLOD=4.11 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:61,3:0.040:3:0:1.00:2276,105:15:46 0/0:67,0:0.00:0:0:.:2651,0:36:31
chr2 166027176 rs3754961 A G . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=11;MIN_ED=11;NLOD=1.20;TLOD=7.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.667:0:3:1.00:34,107:0:1 0/0:4,0:0.00:0:0:.:150,0:2:2
chr2 166027187 rs3754960 T A . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=11;MIN_ED=11;NLOD=1.20;TLOD=8.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:0:3:0.00:0,109:0:0 0/0:4,0:0.00:0:0:.:147,0:2:2
chr2 166179966 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.15;TLOD=4.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:70,3:0.035:2:1:0.667:2488,89:30:40 0/0:56,0:0.00:0:0:.:2153,0:26:30
chr2 172374078 rs6433296 C G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.19 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,3:0.333:3:0:0.00:129,105:2:2 0/0:5,0:0.00:0:0:.:181,0:3:2
chr2 174819615 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.54;TLOD=4.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:55,3:0.042:3:0:1.00:2093,110:26:29 0/0:41,0:0.00:0:0:.:1579,0:14:27
chr2 175202199 . AGCG A . str_contraction;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.02;RPA=7,6;RU=GCG;STR;TLOD=4.92 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:70,3:0.036:2:1:.:2632,111:35:35 0/0:92,0:0.00:0:0:.:3319,0:38:54
chr2 179431540 rs56044609 C T . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.40;TLOD=5.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:48,4:0.050:0:4:1.00:1682,142:16:32 0/0:57,0:0.00:0:0:.:2025,0:26:31
chr2 179472151 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=4.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:43,2:0.061:2:0:1.00:1652,69:28:15 0/0:41,0:0.00:0:0:.:1714,0:21:20
chr2 179480407 . C T . t_lod_fstar ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=14.75;TLOD=4.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:53,4:0.049:4:0:0.00:2106,137:27:26 0/0:69,0:0.00:0:0:.:2740,0:35:34
chr2 179870486 rs13026189 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=8.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,74:0:0 0/0:5,0:0.00:0:0:.:201,0:2:3
chr2 181954684 rs4575685 A T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=16.76 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,5:1.00:3:2:0.400:0,185:0:0 0/0:4,0:0.00:0:0:.:149,0:3:1
chr2 183850911 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.28;TLOD=5.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:26,2:0.091:1:1:0.500:987,72:9:17 0/0:25,0:0.00:0:0:.:996,0:15:10
chr2 186181146 rs2113497 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=8.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,75:0:0 0/0:4,0:0.00:0:0:.:152,0:2:2
chr2 186671538 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.34;TLOD=20.44 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:38,9:0.194:5:4:0.556:1483,323:16:22 0/0:50,0:0.00:0:0:.:2043,0:33:17
chr2 191179508 rs4853693 T G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.667:0,120:0:0 0/0:5,0:0.00:0:0:.:197,0:3:2
chr2 197990601 rs201785790 C T . t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.22;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:31,2:0.069:0:2:1.00:1106,67:15:16 0/0:30,0:0.00:0:0:.:1132,0:9:21
chr2 198175412 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=24.38;TLOD=4.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:123,4:0.024:0:4:1.00:4672,142:48:75 0/0:112,0:0.00:0:0:.:4488,0:66:46
chr2 198950968 rs75433604 A AT . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=26.21 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,9:0.778:4:5:.:106,333:3:0 0/0:6,0:0.00:0:0:.:209,0:1:5
chr2 202285299 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.59;TLOD=5.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,2:0.091:1:1:0.500:845,80:9:14 0/0:36,0:0.00:0:0:.:1349,0:22:14
chr2 202900467 . G A . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=12.34;TLOD=4.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:31,3:0.071:1:2:0.333:1232,104:16:15 0/0:45,0:0.00:0:0:.:1799,0:19:26
chr2 207581090 rs4675626 G C . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=1;MAX_ED=11;MIN_ED=11;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0|1:207581090_G_C:0,83:0:0 0/0:4,0:0.00:0:0:.:0|1:207581090_G_C:169,0:2:2
chr2 207581101 rs4675627 C G . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=1;MAX_ED=11;MIN_ED=11;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0|1:207581090_G_C:0,74:0:0 0/0:4,0:0.00:0:0:.:0|1:207581090_G_C:165,0:2:2
chr2 208134180 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.08;TLOD=4.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:39,2:0.067:2:0:1.00:1499,69:11:28 0/0:40,0:0.00:0:0:.:1546,0:17:23
chr2 210370416 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,72:0:0 0/0:4,0:0.00:0:0:.:147,0:2:2
chr2 210838004 rs141804658 TTC T . str_contraction;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.97;RPA=8,7;RU=TC;STR;TLOD=5.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:32,5:0.107:0:5:.:1215,191:15:17 0/0:49,0:0.00:0:0:.:1997,0:25:24
chr2 218712886 rs375721540 GGCT G . str_contraction;t_lod_fstar DB;ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=25.49;RPA=9,8;RU=GCT;STR;TLOD=4.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:116,7:0.032:3:4:.:4395,270:56:60 0/0:108,1:0.00:1:0:.:4252,42:57:51
chr2 219249070 . C T . t_lod_fstar ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=13.50;TLOD=4.26 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:83,4:0.034:0:4:1.00:2894,124:43:40 0/0:54,0:0.00:0:0:.:1946,0:29:25
chr2 220039272 rs7593818 G C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=10.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,3:0.375:2:1:0.667:198,119:2:3 0/0:5,0:0.00:0:0:.:202,0:3:2
chr2 220075473 rs192931087 C T . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=4.36 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:65,3:0.043:1:2:0.667:2289,108:40:25 0/0:53,0:0.00:0:0:.:2064,0:29:24
chr2 220330644 . TGC T . str_contraction;t_lod_fstar ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=6.01;RPA=3,2;RU=GC;STR;TLOD=4.22 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,2:0.074:1:1:.:939,68:21:6 0/0:23,0:0.00:0:0:.:861,0:14:9
chr2 223553153 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.59;TLOD=12.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:41,5:0.108:2:3:0.400:1556,193:22:19 0/0:47,0:0.00:0:0:.:1808,0:18:29
chr2 224746589 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=5.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,3:0.154:0:3:1.00:491,87:6:8 0/0:14,0:0.00:0:0:.:562,0:9:5
chr2 227875219 rs377657639 TG T . t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.82;RPA=2,1;RU=G;STR;TLOD=5.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,2:0.167:1:1:.:365,75:4:6 0/0:26,0:0.00:0:0:.:996,0:14:12
chr2 228564065 . G A . clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar ECNT=5;HCNT=1;MAX_ED=75;MIN_ED=15;NLOD=14.75;TLOD=5.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:54,3:0.043:2:1:0.667:0|1:228564065_G_A:2055,120:27:27 0/0:54,1:0.00:1:0:1.00:0|1:228564065_G_A:2096,41:27:27
chr2 228564080 . G A . clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar ECNT=5;HCNT=1;MAX_ED=75;MIN_ED=15;NLOD=15.05;TLOD=5.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:53,3:0.043:2:1:0.667:0|1:228564065_G_A:1814,120:26:27 0/0:55,1:0.00:1:0:1.00:0|1:228564065_G_A:1967,39:25:30
chr2 228564092 . A G . clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar ECNT=5;HCNT=1;MAX_ED=75;MIN_ED=15;NLOD=15.65;TLOD=5.39 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:57,3:0.042:2:1:0.333:0|1:228564065_G_A:2088,122:27:30 0/0:57,1:0.00:1:0:0.00:0|1:228564065_G_A:2128,41:30:27
chr2 228564115 . T C . clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar ECNT=5;HCNT=1;MAX_ED=75;MIN_ED=15;NLOD=14.45;TLOD=5.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:61,3:0.039:2:1:0.667:0|1:228564065_G_A:2261,97:29:32 0/0:53,1:0.00:1:0:1.00:0|1:228564065_G_A:2009,35:25:28
chr2 228564140 . C G . clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar ECNT=5;HCNT=1;MAX_ED=75;MIN_ED=15;NLOD=14.45;TLOD=5.37 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:58,3:0.041:2:1:0.333:0|1:228564065_G_A:2280,117:29:29 0/0:54,1:0.00:1:0:0.00:0|1:228564065_G_A:2181,40:26:28
chr2 233091419 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,76:0:0 0/0:4,0:0.00:0:0:.:150,0:3:1
chr2 233243528 rs377162921 ATGC A . alt_allele_in_normal;str_contraction DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=16.20;RPA=7,6;RU=TGC;STR;TLOD=6.91 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:52,5:0.065:3:2:.:1924,189:29:23 0/0:70,2:0.00:0:2:.:2607,74:42:28
chr2 234668879 rs57191451 CAT C . str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.20;RPA=7,6;RU=AT;STR;TLOD=4.46 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:12,2:0.167:2:0:.:462,79:9:3 0/0:17,0:0.00:0:0:.:695,0:8:9
chr2 234905388 rs11563055 A G . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.03 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.333:0,119:0:0 0/0:4,0:0.00:0:0:.:153,0:3:1
chr2 236410429 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=4.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,77:0:0 0/0:8,0:0.00:0:0:.:330,0:5:3
chr2 238733001 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=15.95;TLOD=4.27 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:59,3:0.043:0:3:1.00:1986,108:29:30 0/0:69,0:0.00:0:0:.:2484,0:35:34
chr2 241979264 rs57948600 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=14.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.571:1:3:0.750:111,146:2:1 0/0:5,0:0.00:0:0:.:193,0:1:4
chr2 242144120 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=4.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:21,3:0.091:0:3:1.00:805,107:17:4 0/0:21,0:0.00:0:0:.:819,0:10:11
chr3 3841431 rs2633833 C G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=18.14 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,7:0.417:5:2:0.286:281,283:4:3 0/0:7,0:0.00:0:0:.:273,0:3:4
chr3 4774721 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.19;TLOD=4.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:41,2:0.059:0:2:1.00:1448,68:22:19 0/0:44,0:0.00:0:0:.:1654,0:23:21
chr3 9848780 . G A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,72:0:0 0/0:4,0:0.00:0:0:.:168,0:2:2
chr3 10089749 rs12330599 T C . alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar DB;ECNT=4;HCNT=17;MAX_ED=26;MIN_ED=23;NLOD=1.26;TLOD=5.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,2:0.111:0:2:0.00:700,80:14:5 0/0:44,2:0.059:1:1:0.500:1705,81:20:24
chr3 10089772 rs79830642 C G . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=4;HCNT=17;MAX_ED=26;MIN_ED=23;NLOD=5.43;TLOD=6.22 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:22,2:0.105:0:2:1.00:0|1:10089772_C_G:859,78:15:7 0/0:40,2:0.030:0:2:1.00:0|1:10089772_C_G:1609,77:17:23
chr3 10089773 rs7615646 A G . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=4;HCNT=17;MAX_ED=26;MIN_ED=23;NLOD=5.43;TLOD=6.22 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:22,2:0.105:0:2:1.00:0|1:10089772_C_G:837,78:15:7 0/0:39,2:0.030:0:2:1.00:0|1:10089772_C_G:1517,69:17:22
chr3 10089775 rs75389047 A G . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=4;HCNT=17;MAX_ED=26;MIN_ED=23;NLOD=5.43;TLOD=6.22 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:22,2:0.105:0:2:1.00:0|1:10089772_C_G:775,80:15:7 0/0:38,2:0.030:0:2:1.00:0|1:10089772_C_G:1420,82:17:21
chr3 10106408 . C T . PASS ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=12.04;TLOD=12.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:31,6:0.194:3:3:0.500:1013,215:14:17 0/0:50,1:0.00:0:1:1.00:1893,39:25:25
chr3 10382130 rs372692383 C T . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=24.08;TLOD=4.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:56,3:0.040:2:1:0.333:2183,102:30:26 0/0:100,0:0.00:0:0:.:3966,0:53:47
chr3 14561098 rs13098810 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:2:2:0.500:0,151:0:0 0/0:5,0:0.00:0:0:.:198,0:2:3
chr3 14744533 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=4.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:29,4:0.115:3:1:0.250:1106,114:14:15 0/0:37,0:0.00:0:0:.:1486,0:20:17
chr3 19924094 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.18;TLOD=5.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,3:0.105:2:1:0.667:730,109:7:12 0/0:34,0:0.00:0:0:.:1292,0:12:22
chr3 26953693 rs35229072 T C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,71:0:0 0/0:4,0:0.00:0:0:.:148,0:3:1
chr3 33109799 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.52;TLOD=6.27 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,3:0.111:1:2:0.667:841,115:14:9 0/0:17,0:0.00:0:0:.:656,0:7:10
chr3 35258264 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.17;TLOD=8.16 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,4:0.130:3:1:0.250:1069,143:11:16 0/0:18,0:0.00:0:0:.:675,0:13:5
chr3 36810154 . C T . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar ECNT=4;HCNT=8;MAX_ED=24;MIN_ED=10;NLOD=2.11;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0|1:36810154_C_T:0,76:0:0 0/0:10,0:0.00:0:0:.:0|1:36810154_C_T:396,0:3:7
chr3 36810164 . T C . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar ECNT=4;HCNT=8;MAX_ED=24;MIN_ED=10;NLOD=2.11;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0|1:36810154_C_T:0,69:0:0 0/0:10,0:0.00:0:0:.:0|1:36810154_C_T:386,0:3:7
chr3 36810168 . T C . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar ECNT=4;HCNT=8;MAX_ED=24;MIN_ED=10;NLOD=2.11;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0|1:36810154_C_T:0,81:0:0 0/0:10,0:0.00:0:0:.:0|1:36810154_C_T:381,0:3:7
chr3 36810178 . A G . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar ECNT=4;HCNT=8;MAX_ED=24;MIN_ED=10;NLOD=1.81;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0|1:36810154_C_T:0,80:0:0 0/0:8,0:0.00:0:0:.:0|1:36810154_C_T:305,0:2:6
chr3 37818880 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.13;TLOD=4.79 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,3:0.095:2:1:0.333:945,103:12:12 0/0:34,0:0.00:0:0:.:1394,0:12:22
chr3 38597061 rs12715317 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=7.82 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:2:0:1.00:39,77:0:1 0/0:7,0:0.00:0:0:.:280,0:3:4
chr3 38769262 . A G . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,74:0:0 0/0:4,0:0.00:0:0:.:155,0:2:2
chr3 44914896 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.54;TLOD=4.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:39,4:0.065:0:4:0.00:1527,145:22:17 0/0:45,0:0.00:0:0:.:1692,0:19:26
chr3 45637447 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.50;TLOD=4.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:53,3:0.048:3:0:1.00:2069,111:27:26 0/0:54,0:0.00:0:0:.:2082,0:28:26
chr3 47042834 . C T . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=21.67;TLOD=4.51 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:72,4:0.049:3:1:0.250:2803,116:39:33 0/0:91,0:0.00:0:0:.:3638,0:45:46
chr3 48219320 . AACAC A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.53;RPA=9,7;RU=AC;STR;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.500:2:0:.:36,72:0:1 0/0:3,0:NaN:0:0:.:0,0:0:0
chr3 49154177 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=31.60;TLOD=4.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:91,3:0.028:1:2:0.333:3451,112:55:36 0/0:136,0:0.00:0:0:.:5223,0:65:71
chr3 49362304 . G A . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=20.47;TLOD=4.56 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:75,3:0.034:1:2:0.333:2859,112:35:40 0/0:92,0:0.00:0:0:.:3730,0:54:38
chr3 49690233 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=24.68;TLOD=4.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:83,3:0.030:2:1:0.333:2989,109:39:44 0/0:96,0:0.00:0:0:.:3662,0:52:44
chr3 49723167 rs9714011 T G . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=12;MAX_ED=7;MIN_ED=7;NLOD=17.89;TLOD=21.22 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:245,14:0.041:7:7:0.500:0|1:49723167_T_G:9010,419:105:140 0/0:253,17:0.061:7:10:0.412:0|1:49723167_T_G:9614,553:123:130
chr3 49723174 rs9714343 A G . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=12;MAX_ED=7;MIN_ED=7;NLOD=12.81;TLOD=24.73 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:239,15:0.047:8:7:0.467:0|1:49723167_T_G:8405,593:102:137 0/0:247,20:0.071:10:10:0.500:0|1:49723167_T_G:9346,825:119:128
chr3 49735428 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.46;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:57,3:0.044:1:2:0.333:2245,108:37:20 0/0:69,0:0.00:0:0:.:2784,0:37:32
chr3 49760248 . C T . t_lod_fstar ECNT=1;HCNT=13;MAX_ED=.;MIN_ED=.;NLOD=15.35;TLOD=4.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:41,2:0.053:0:2:1.00:1598,72:17:24 0/0:62,0:0.00:0:0:.:2518,0:36:26
chr3 49995508 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,70:0:0 0/0:4,0:0.00:0:0:.:165,0:2:2
chr3 50197154 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=30.10;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:83,4:0.031:4:0:1.00:3254,142:42:41 0/0:124,0:0.00:0:0:.:4888,0:68:56
chr3 50289044 . C A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.06;TLOD=4.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:87,4:0.031:4:0:0.00:3368,145:55:32 0/0:81,0:0.00:0:0:.:3192,0:45:36
chr3 51967834 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=4.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:25,3:0.080:0:3:1.00:919,97:14:11 0/0:28,0:0.00:0:0:.:1124,0:22:6
chr3 52546848 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.59;TLOD=4.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:41,2:0.061:1:1:0.500:1601,72:17:24 0/0:39,0:0.00:0:0:.:1544,0:19:20
chr3 55637401 . C A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,75:0:0 0/0:4,0:0.00:0:0:.:163,0:3:1
chr3 56020159 rs7613818 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=11.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.750:2:1:0.667:40,109:0:1 0/0:5,0:0.00:0:0:.:192,0:3:2
chr3 56569588 rs141216215 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=13.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,5:1.00:5:0:1.00:0,197:0:0 0/0:5,0:0.00:0:0:.:199,0:2:3
chr3 59036846 rs78190278 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=8.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.333:0,115:0:0 0/0:5,0:0.00:0:0:.:156,0:3:2
chr3 63645231 rs4688176 G C . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=21;MIN_ED=21;NLOD=1.50;TLOD=18.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,6:0.625:3:3:0.500:132,221:4:0 0/0:5,0:0.00:0:0:.:174,0:4:1
chr3 63645252 rs4688419 T C . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=21;MIN_ED=21;NLOD=1.51;TLOD=29.49 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,11:0.692:6:5:0.545:179,367:4:1 0/0:5,0:0.00:0:0:.:199,0:4:1
chr3 64132762 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=25.28;TLOD=4.19 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:80,4:0.028:2:2:0.500:3114,145:38:42 0/0:100,0:0.00:0:0:.:3986,0:48:52
chr3 66550709 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.83;TLOD=5.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:26,3:0.111:1:2:0.333:912,106:14:12 0/0:38,0:0.00:0:0:.:1337,0:16:22
chr3 68788291 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.88;TLOD=5.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:25,3:0.087:3:0:0.00:897,104:6:19 0/0:29,0:0.00:0:0:.:1093,0:17:12
chr3 71962315 rs61192976 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=11.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.750:1:2:0.667:72,109:0:2 0/0:5,0:0.00:0:0:.:198,0:2:3
chr3 74383997 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=4.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:32,4:0.083:0:4:1.00:1192,120:17:15 0/0:46,0:0.00:0:0:.:1932,0:23:23
chr3 84520219 . C A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,72:0:0 0/0:4,0:0.00:0:0:.:167,0:2:2
chr3 93644494 . G T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,75:0:0 0/0:4,0:0.00:0:0:.:154,0:0:4
chr3 97655743 . T C . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=5.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:47,3:0.053:0:3:0.00:1688,111:23:24 0/0:43,0:0.00:0:0:.:1625,0:22:21
chr3 100630470 rs77480835 C G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,64:0:0 0/0:4,0:0.00:0:0:.:163,0:4:0
chr3 107938240 rs1289754 G C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=14.03 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,5:0.400:3:2:0.600:230,192:2:4 0/0:6,0:0.00:0:0:.:237,0:3:3
chr3 109059008 . G A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,75:0:0 0/0:4,0:0.00:0:0:.:155,0:1:3
chr3 113005579 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.04;TLOD=4.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:46,3:0.065:3:0:1.00:1843,103:19:27 0/0:52,0:0.00:0:0:.:2149,0:32:20
chr3 113652425 . T C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=24.19 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,8:0.250:1:7:0.125:842,321:9:15 0/0:21,0:0.00:0:0:.:769,0:6:15
chr3 114027065 . CGT C . germline_risk;str_contraction;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.79;RPA=9,8;RU=GT;STR;TLOD=5.96 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,3:0.300:0:3:.:266,98:3:5 0/0:7,0:0.00:0:0:.:205,0:2:5
chr3 115928754 rs9865806 C T . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=44;MIN_ED=44;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,75:0:0 0/0:4,0:0.00:0:0:.:152,0:3:1
chr3 115928798 rs9810620 T C . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=44;MIN_ED=44;NLOD=0.602;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,79:0:0 0/0:4,0:0.00:0:0:.:158,0:2:2
chr3 120326607 rs75201429 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,82:0:0 0/0:4,0:0.00:0:0:.:159,0:2:2
chr3 121980684 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.30;TLOD=55.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:49,21:0.298:13:8:0.619:1760,771:20:29 0/0:64,0:0.00:0:0:.:2362,0:33:31
chr3 125443900 rs201762894 T A . PASS DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.13;TLOD=7.87 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:31,5:0.156:3:2:0.600:1124,182:23:8 0/0:35,0:0.00:0:0:.:1323,0:14:21
chr3 126255181 . C A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.99;TLOD=14.46 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:36,6:0.156:2:4:0.667:1402,219:25:11 0/0:50,0:0.00:0:0:.:2017,0:35:15
chr3 126499406 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.03;TLOD=4.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,4:0.061:2:2:0.500:1411,141:16:24 0/0:39,0:0.00:0:0:.:1442,0:23:16
chr3 127558042 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.77;TLOD=15.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,6:0.294:4:2:0.667:525,220:8:7 0/0:19,0:0.00:0:0:.:694,0:13:6
chr3 128107982 rs1625296 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=12.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.750:3:0:1.00:39,119:1:0 0/0:5,0:0.00:0:0:.:202,0:3:2
chr3 128118711 rs1702136 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=13.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,5:1.00:1:4:0.200:0,173:0:0 0/0:4,0:0.00:0:0:.:155,0:2:2
chr3 128200459 rs2713604 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=15.77 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,5:0.667:1:4:0.200:64,187:1:1 0/0:4,0:0.00:0:0:.:153,0:2:2
chr3 129214358 rs73204230 T C . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=2;MAX_ED=11;MIN_ED=11;NLOD=14.61;TLOD=10.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:84,5:0.056:3:2:0.600:2971,200:28:56 0/0:67,2:0.019:1:1:0.500:2589,54:28:39
chr3 129214369 rs73204231 C T . clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=11;MIN_ED=11;NLOD=15.35;TLOD=4.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:88,3:0.028:2:1:0.333:3064,119:31:57 0/0:69,1:0.00:0:1:1.00:2522,39:29:40
chr3 129236529 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.97;TLOD=4.98 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:17,2:0.118:2:0:1.00:641,67:11:6 0/0:20,0:0.00:0:0:.:787,0:8:12
chr3 129304821 rs146738111 C T . alt_allele_in_normal DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=14.46;TLOD=6.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:164,7:0.024:4:3:0.429:5889,261:81:83 0/0:109,6:0.033:4:2:0.333:4066,234:54:55
chr3 129624418 rs74281808 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=7.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:40,69:0:1 0/0:6,0:0.00:0:0:.:238,0:1:5
chr3 133472284 rs8177214 CAG C . germline_risk;str_contraction DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.11;RPA=2,1;RU=AG;STR;TLOD=23.39 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,6:0.500:3:3:.:223,232:3:3 0/0:7,0:0.00:0:0:.:272,0:4:3
chr3 135684510 . CGAG C . germline_risk;str_contraction ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;RPA=8,7;RU=GAG;STR;TLOD=6.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,3:0.222:0:3:.:276,82:2:6 0/0:5,0:0.00:0:0:.:171,0:3:2
chr3 136710896 rs371632444 C T . PASS DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.59;TLOD=6.84 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:70,4:0.054:2:2:0.500:2349,142:25:45 0/0:53,0:0.00:0:0:.:1850,0:22:31
chr3 137873280 . T C . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,53:0:0 0/0:4,0:0.00:0:0:.:156,0:4:0
chr3 138622384 rs4894368 A G . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=3;MAX_ED=21;MIN_ED=21;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0|1:138622384_A_G:0,56:0:0 0/0:4,0:0.00:0:0:.:0|1:138622384_A_G:113,0:0:4
chr3 138622405 rs7631910 T C . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=3;MAX_ED=21;MIN_ED=21;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,1:1.00:0:1:0.00:0|1:138622384_A_G:0,28:0:0 0/0:3,0:0.00:0:0:.:0|1:138622384_A_G:110,0:0:3
chr3 138738711 . C T . t_lod_fstar ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=16.85;TLOD=4.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:88,4:0.028:2:2:0.500:3433,143:42:46 0/0:72,0:0.00:0:0:.:2845,0:42:30
chr3 138739380 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.45;TLOD=4.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:69,3:0.033:0:3:1.00:2673,108:43:26 0/0:60,0:0.00:0:0:.:2372,0:44:16
chr3 142682052 . G A . t_lod_fstar ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=18.61;TLOD=4.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:68,3:0.036:3:0:1.00:2681,103:24:44 0/0:77,0:0.00:0:0:.:3085,0:44:33
chr3 142702228 . G A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,80:0:0 0/0:4,0:0.00:0:0:.:162,0:2:2
chr3 145827939 rs3804661 G C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:1:2:0.333:125,118:3:0 0/0:4,0:0.00:0:0:.:170,0:1:3
chr3 151143354 . TTG T . str_contraction;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.36;RPA=9,8;RU=TG;STR;TLOD=4.44 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,5:0.150:0:5:.:706,183:12:8 0/0:22,0:0.00:0:0:.:849,0:12:10
chr3 151550767 rs12636012 C A . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=13.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,6:0.500:5:1:0.167:243,210:3:3 0/0:4,0:0.00:0:0:.:152,0:2:2
chr3 157820718 rs374383282 AAC A . alt_allele_in_normal;str_contraction DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.79;RPA=7,6;RU=AC;STR;TLOD=14.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:39,8:0.176:4:4:.:1345,285:21:18 0/0:35,1:0.032:0:1:.:1365,40:21:14
chr3 168833702 rs375314275 G A . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.50;TLOD=4.68 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:44,3:0.054:0:3:0.00:1553,108:15:29 0/0:32,1:0.038:1:0:1.00:1144,38:18:14
chr3 170009952 rs1568874 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.750:1:2:0.333:41,99:0:1 0/0:4,0:0.00:0:0:.:167,0:2:2
chr3 170198908 . C T . PASS ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=4.17;TLOD=7.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:47,4:0.081:0:4:1.00:1899,138:19:28 0/0:21,0:0.00:0:0:.:825,0:13:8
chr3 170846641 . C T . t_lod_fstar ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=8.13;TLOD=4.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:39,3:0.057:2:1:0.333:1514,91:14:25 0/0:29,0:0.00:0:0:.:1170,0:15:14
chr3 172992478 rs34841717 C A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=15.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.667:2:2:0.500:124,140:2:1 0/0:6,0:0.00:0:0:.:243,0:6:0
chr3 174191721 rs9852925 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:2:2:0.500:0,164:0:0 0/0:6,0:0.00:0:0:.:212,0:4:2
chr3 179009532 rs13086073 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.92 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.667:4:0:0.00:79,149:2:0 0/0:5,0:0.00:0:0:.:199,0:4:1
chr3 183898428 . T C . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=5.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:44,4:0.057:0:4:0.00:1637,140:16:28 0/0:39,0:0.00:0:0:.:1544,0:26:13
chr3 184039743 . GGAA G . str_contraction ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=15.30;RPA=5,4;RU=GAA;STR;TLOD=7.37 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:66,4:0.049:3:1:.:2505,154:33:33 0/0:60,1:0.00:1:0:.:2301,43:41:19
chr3 184044260 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.56;TLOD=4.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:61,3:0.042:2:1:0.667:2429,106:28:33 0/0:68,0:0.00:0:0:.:2698,0:41:27
chr3 184335364 rs142433965 AAAG A . germline_risk;str_contraction DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;RPA=3,2;RU=AAG;STR;TLOD=7.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:2:0:.:73,71:1:1 0/0:4,0:0.00:0:0:.:155,0:2:2
chr3 189582020 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.51;TLOD=20.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:83,12:0.099:4:8:0.333:3181,440:45:38 0/0:65,0:0.00:0:0:.:2525,0:31:34
chr3 191603363 rs199972414 T TTTTG . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.609;RPA=6,7;RU=TTTG;STR;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:.:0,71:0:0 0/0:3,0:0.00:0:0:.:126,0:1:2
chr3 193017204 rs6805083 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.333:1:1:0.500:129,75:0:4 0/0:4,0:0.00:0:0:.:139,0:1:3
chr3 193071727 rs7632644 G A . germline_risk DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.41;TLOD=13.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,7:0.455:3:4:0.429:306,263:3:5 0/0:9,1:0.125:1:0:1.00:375,17:6:3
chr3 193331742 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.08;TLOD=12.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,5:0.211:3:2:0.400:769,186:10:10 0/0:30,0:0.00:0:0:.:1201,0:14:16
chr3 194118797 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.50;TLOD=4.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:68,3:0.033:1:2:0.667:2669,108:34:34 0/0:55,0:0.00:0:0:.:2214,0:31:24
chr3 195300784 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.19;TLOD=4.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:42,2:0.063:1:1:0.500:1574,68:17:25 0/0:49,0:0.00:0:0:.:2003,0:30:19
chr3 195343770 rs116399325 G T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.500:3:0:1.00:71,108:1:1 0/0:4,0:0.00:0:0:.:164,0:3:1
chr3 195370265 rs71232350 C T . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=17;MIN_ED=17;NLOD=2.11;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:0:2:1.00:0|1:195370265_C_T:26,67:0:1 0/0:8,0:0.00:0:0:.:0|1:195370265_C_T:306,0:5:3
chr3 195370282 rs71232349 A T . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=17;MIN_ED=17;NLOD=1.81;TLOD=7.30 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.667:0:3:1.00:0|1:195370265_C_T:34,100:0:1 0/0:8,0:0.00:0:0:.:0|1:195370265_C_T:306,0:4:4
chr3 195390904 rs146182374 T C . PASS DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=7.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:25,5:0.143:2:3:0.400:891,187:12:13 0/0:20,0:0.00:0:0:.:711,0:12:8
chr3 195410640 rs6583273 T C . alt_allele_in_normal DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.11;TLOD=12.26 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:121,9:0.074:4:5:0.444:4436,279:57:64 0/0:120,11:0.080:7:4:0.636:4560,387:62:58
chr3 195422456 rs9827670 C T . clustered_events;germline_risk DB;ECNT=2;HCNT=1;MAX_ED=10;MIN_ED=10;NLOD=0.903;TLOD=7.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:3:0:0.00:0|1:195422456_C_T:113,113:0:3 0/0:4,0:0.00:0:0:.:0|1:195422456_C_T:147,0:0:4
chr3 195422466 rs9827675 C T . clustered_events;germline_risk DB;ECNT=2;HCNT=1;MAX_ED=10;MIN_ED=10;NLOD=0.903;TLOD=7.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:3:0:0.00:0|1:195422456_C_T:114,91:0:3 0/0:4,0:0.00:0:0:.:0|1:195422456_C_T:146,0:0:4
chr3 195505907 rs138720131 T G . alt_allele_in_normal DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=15.03;TLOD=15.49 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:158,13:0.067:6:7:0.462:5008,393:83:75 0/0:140,11:0.066:6:5:0.545:4584,294:67:73
chr3 195507472 rs368203789 C G . alt_allele_in_normal;germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.01;TLOD=13.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:124,13:0.073:5:8:0.615:4474,506:62:62 0/0:175,20:0.089:14:6:0.300:6632,658:111:64
chr3 195507762 . T TGTGGATGCCGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTCACCTGTGGATGCTGAGGAAGTGTCGGTGACAGGAAGAGGGGTGGCGTGACCG . t_lod_fstar ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=20.14;TLOD=4.11 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:103,0:0.043:0:0:.:3586,0:57:46 0/0:79,0:0.058:0:0:.:2891,0:35:44
chr3 195507999 rs200187145 A T . alt_allele_in_normal;clustered_events DB;ECNT=4;HCNT=4;MAX_ED=11;MIN_ED=6;NLOD=13.49;TLOD=16.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:213,11:0.038:6:5:0.455:0|1:195507999_A_T:7106,344:101:112 0/0:179,11:0.051:5:6:0.545:0|1:195507999_A_T:6432,328:100:79
chr3 195508005 rs79196348 A G . alt_allele_in_normal;clustered_events DB;ECNT=4;HCNT=4;MAX_ED=11;MIN_ED=6;NLOD=15.46;TLOD=12.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:217,8:0.027:5:3:0.375:0|1:195507999_A_T:7405,281:105:112 0/0:179,9:0.045:4:5:0.556:0|1:195507999_A_T:6251,323:101:78
chr3 195508009 rs201765368 G A . alt_allele_in_normal;clustered_events DB;ECNT=4;HCNT=4;MAX_ED=11;MIN_ED=6;NLOD=28.66;TLOD=9.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:211,7:0.022:5:2:0.714:0|1:195507999_A_T:7890,226:101:110 0/0:179,7:0.026:3:4:0.429:0|1:195507999_A_T:7188,209:100:79
chr3 195508010 rs61388923 C A . alt_allele_in_normal;clustered_events DB;ECNT=4;HCNT=4;MAX_ED=11;MIN_ED=6;NLOD=29.86;TLOD=9.63 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:212,7:0.022:5:2:0.286:0|1:195507999_A_T:7853,253:101:111 0/0:181,7:0.025:3:4:0.571:0|1:195507999_A_T:6849,175:100:81
chr3 195508691 rs199926851 T C . alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar DB;ECNT=4;HCNT=8;MAX_ED=19;MIN_ED=11;NLOD=0.904;TLOD=6.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:22,3:0.125:3:0:1.00:0|1:195508691_T_C:795,73:13:9 0/0:99,3:0.025:2:1:0.667:0|1:195508691_T_C:3275,79:41:58
chr3 195508702 rs200473221 G A . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=4;HCNT=8;MAX_ED=19;MIN_ED=11;NLOD=6.02;TLOD=6.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:18,3:0.136:3:0:1.00:0|1:195508691_T_C:681,78:11:7 0/0:104,2:0.00:1:1:0.500:0|1:195508691_T_C:4121,59:46:58
chr3 195508709 . A G . clustered_events;multi_event_alt_allele_in_normal ECNT=4;HCNT=24;MAX_ED=19;MIN_ED=11;NLOD=5.97;TLOD=6.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,3:0.188:3:0:0.00:462,89:7:6 0/0:110,1:0.00:1:0:0.00:3831,39:44:66
chr3 195508710 . G A . clustered_events;multi_event_alt_allele_in_normal ECNT=4;HCNT=8;MAX_ED=19;MIN_ED=11;NLOD=6.02;TLOD=6.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:13,3:0.167:3:0:1.00:0|1:195508691_T_C:471,89:7:6 0/0:112,1:0.00:1:0:1.00:0|1:195508691_T_C:4238,38:45:67
chr3 195509428 . GAGGTGGCGTGACCTATGGATGCTGAGGAAGTGTCGGTGACAGGAAGAA G . alt_allele_in_normal ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.26;TLOD=12.16 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:162,16:0.049:9:7:.:5442,636:96:66 0/0:140,17:0.094:11:6:.:4964,666:92:48
chr3 195510030 rs374297426 C G . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=18;MAX_ED=.;MIN_ED=.;NLOD=42.97;TLOD=4.16 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:228,10:0.033:6:4:0.400:7066,256:136:92 0/0:246,9:0.020:6:3:0.333:7471,283:114:132
chr3 195511774 rs365279 A G . alt_allele_in_normal DB;ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=66.03;TLOD=7.70 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:404,17:0.028:7:10:0.588:13850,368:221:183 0/0:339,12:0.021:6:6:0.500:11944,234:186:153
chr3 195513203 rs77879173 C T . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=23;MAX_ED=11;MIN_ED=4;NLOD=20.21;TLOD=20.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:335,14:0.029:9:5:0.357:0|1:195513203_C_T:11319,487:169:166 0/0:265,14:0.048:5:9:0.643:0|1:195513203_C_T:9364,459:152:113
chr3 195513207 rs78338106 A G . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=23;MAX_ED=11;MIN_ED=4;NLOD=28.93;TLOD=14.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:333,10:0.023:6:4:0.400:0|1:195513203_C_T:11894,320:168:165 0/0:265,11:0.040:4:7:0.636:0|1:195513203_C_T:9776,387:152:113
chr3 195513214 rs75583821 A G . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=46;MAX_ED=11;MIN_ED=4;NLOD=41.51;TLOD=11.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:329,11:0.024:7:4:0.364:12145,361:161:168 0/0:270,12:0.036:5:7:0.583:10238,326:149:121
chr3 195513474 rs77382269 T G . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=3;MAX_ED=19;MIN_ED=17;NLOD=12.02;TLOD=13.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:175,23:0.133:10:13:0.435:0|1:195513474_T_G:6248,761:87:88 0/0:142,24:0.161:12:12:0.500:0|1:195513474_T_G:4984,798:67:75
chr3 195513491 rs79338930 G T . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=3;MAX_ED=19;MIN_ED=17;NLOD=3.53;TLOD=32.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:189,20:0.099:10:10:0.500:0|1:195513474_T_G:6591,641:99:90 0/0:142,19:0.118:9:10:0.474:0|1:195513474_T_G:5226,668:64:78
chr3 195513493 . CTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATAATGAGGAAGCAT C . alt_allele_in_normal;clustered_events ECNT=3;HCNT=1;MAX_ED=19;MIN_ED=17;NLOD=21.27;TLOD=14.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:243,16:0.057:9:7:.:8122,501:123:120 0/0:202,18:0.073:8:10:.:7204,681:97:105
chr3 195690271 rs201745109 T C . clustered_events;homologous_mapping_event;t_lod_fstar DB;ECNT=6;HCNT=23;MAX_ED=224;MIN_ED=15;NLOD=25.89;TLOD=4.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:70,3:0.038:2:1:0.667:2504,114:31:39 0/0:131,0:0.00:0:0:.:4974,0:70:61
chr3 195690286 rs200290177 C G . clustered_events;homologous_mapping_event;t_lod_fstar DB;ECNT=6;HCNT=23;MAX_ED=224;MIN_ED=15;NLOD=25.24;TLOD=4.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:70,3:0.038:2:1:0.333:2630,116:33:37 0/0:125,0:0.00:0:0:.:5044,0:66:59
chr3 195690365 . A T . clustered_events;homologous_mapping_event ECNT=6;HCNT=31;MAX_ED=224;MIN_ED=15;NLOD=16.25;TLOD=6.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:36,6:0.077:4:2:0.333:1310,215:19:17 0/0:60,0:0.00:0:0:.:2254,0:32:28
chr3 195690462 rs201480883 A AG . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=6;HCNT=43;MAX_ED=224;MIN_ED=15;NLOD=1.20;RPA=4,5;RU=G;STR;TLOD=6.70 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,3:0.375:2:1:.:189,117:2:3 0/0:5,0:0.00:0:0:.:195,0:2:3
chr3 195690487 rs201108849 G C . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=6;HCNT=57;MAX_ED=224;MIN_ED=15;NLOD=0.602;TLOD=11.26 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.750:2:1:0.667:0|1:195690487_G_C:40,94:0:1 0/0:3,0:0.00:0:0:.:0|1:195690487_G_C:121,0:1:2
chr3 195690495 rs201875445 G C . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=6;HCNT=57;MAX_ED=224;MIN_ED=15;NLOD=0.602;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:0|1:195690487_G_C:40,60:0:1 0/0:3,0:0.00:0:0:.:0|1:195690487_G_C:121,0:1:2
chr3 195692311 rs62282793 T C . alt_allele_in_normal DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=8.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,6:0.192:3:3:0.500:929,220:11:13 0/0:18,1:0.056:0:1:0.00:714,42:5:13
chr3 195692419 rs77887672 C G . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=16;MAX_ED=63;MIN_ED=63;NLOD=2.74;TLOD=15.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:51,12:0.163:7:5:0.417:1970,478:22:29 0/0:54,6:0.075:2:4:0.667:2157,252:30:24
chr3 195692482 rs139593489 G A . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=2;HCNT=16;MAX_ED=63;MIN_ED=63;NLOD=8.06;TLOD=4.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:49,4:0.071:2:2:0.500:1786,148:20:29 0/0:50,2:0.024:1:1:0.500:1857,77:25:25
chr3 195701548 rs368770817 T C . alt_allele_in_normal DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=6.36;TLOD=9.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:29,4:0.121:2:2:0.500:1007,140:17:12 0/0:35,2:0.054:2:0:1.00:1308,76:16:19
chr3 195709038 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.33;TLOD=5.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,2:0.200:1:1:0.500:381,70:9:2 0/0:25,0:0.00:0:0:.:919,0:14:11
chr3 196435697 rs72499688 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=6.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,2:0.400:1:1:0.500:89,74:2:1 0/0:9,0:0.00:0:0:.:303,0:4:5
chr3 197348524 rs13093904 T C . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=32;MAX_ED=39;MIN_ED=38;NLOD=9.92;TLOD=12.04 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:79,6:0.077:5:1:0.833:2782,245:39:40 0/0:61,3:0.021:1:2:0.333:2209,126:31:30
chr3 197348562 rs202016008 A G . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=33;MAX_ED=39;MIN_ED=38;NLOD=3.36;TLOD=18.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:83,8:0.092:4:4:0.500:0|1:197348562_A_G:3036,316:39:44 0/0:70,4:0.054:3:1:0.250:0|1:197348562_A_G:2660,154:29:41
chr3 197348563 . G T . alt_allele_in_normal;clustered_events;germline_risk ECNT=3;HCNT=33;MAX_ED=39;MIN_ED=38;NLOD=3.36;TLOD=18.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:83,8:0.092:4:4:0.500:0|1:197348562_A_G:3180,285:39:44 0/0:70,4:0.054:3:1:0.750:0|1:197348562_A_G:2729,150:29:41
chr3 197866518 rs71619415 A C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.19 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,3:0.429:3:0:0.00:189,66:3:2 0/0:4,0:0.00:0:0:.:158,0:2:2
chr4 47588 rs147614254 AGAG A . germline_risk DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=10.11 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,3:0.375:3:0:.:208,114:4:2 0/0:6,0:0.00:0:0:.:240,0:4:2
chr4 53547 . G T . alt_allele_in_normal ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.70;TLOD=9.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:51,5:0.078:0:5:0.00:1958,179:17:34 0/0:54,3:0.037:1:2:0.333:2178,115:31:23
chr4 954951 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=5.07 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:33,2:0.067:2:0:0.00:1167,73:20:13 0/0:42,0:0.00:0:0:.:1563,0:22:20
chr4 961677 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=4.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,2:0.118:0:2:1.00:661,72:10:9 0/0:37,0:0.00:0:0:.:1321,0:13:24
chr4 1195021 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=4.56 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,3:0.067:3:0:1.00:1452,103:13:24 0/0:32,0:0.00:0:0:.:1302,0:15:17
chr4 1244453 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.55;TLOD=4.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:41,2:0.063:1:1:0.500:1577,71:19:22 0/0:51,0:0.00:0:0:.:1965,0:23:28
chr4 1309416 rs2272481 C T . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.84;TLOD=5.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:33,1:0.057:1:0:0.00:1000,38:12:21 0/0:38,0:0.00:0:0:.:1293,0:17:21
chr4 3828997 rs28666747 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,74:0:0 0/0:4,0:0.00:0:0:.:164,0:3:1
chr4 5858140 . T C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=6.30 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,3:0.118:3:0:1.00:567,122:5:11 0/0:17,0:0.00:0:0:.:646,0:6:11
chr4 6318025 . T C . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,63:0:0 0/0:4,0:0.00:0:0:.:152,0:3:1
chr4 6366211 rs193248660 T G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.900;TLOD=7.46 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,82:0:0 0/0:4,0:0.00:0:0:.:141,0:4:0
chr4 6621564 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.46;TLOD=4.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:45,2:0.054:2:0:0.00:1646,73:26:19 0/0:71,0:0.00:0:0:.:2692,0:39:32
chr4 7362647 rs17757615 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:41,70:1:0 0/0:4,0:0.00:0:0:.:162,0:3:1
chr4 8477830 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.44;TLOD=4.37 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:26,2:0.083:0:2:1.00:1033,64:9:17 0/0:39,0:0.00:0:0:.:1522,0:26:13
chr4 8612722 rs369320455 TTCACTCATTCAC T . germline_risk;str_contraction DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;RPA=2,1;RU=TCACTCATTCAC;STR;TLOD=15.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,6:0.500:3:3:.:181,217:2:3 0/0:6,0:0.00:0:0:.:223,0:3:3
chr4 8847155 rs148640555 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,74:0:0 0/0:4,0:0.00:0:0:.:167,0:3:1
chr4 8983560 . C CCATCTGTCAT . alt_allele_in_normal;clustered_events ECNT=3;HCNT=24;MAX_ED=49;MIN_ED=45;NLOD=3.04;TLOD=11.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:59,5:0.078:3:2:.:2268,205:32:27 0/0:49,4:0.050:1:3:.:1964,157:26:23
chr4 8983605 . T C . alt_allele_in_normal;clustered_events;germline_risk ECNT=3;HCNT=24;MAX_ED=49;MIN_ED=45;NLOD=1.84;TLOD=8.63 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:56,4:0.063:3:1:0.750:0|1:8983605_T_C:2105,147:29:27 0/0:38,2:0.056:1:1:0.500:0|1:8983605_T_C:1540,79:20:18
chr4 8983609 rs187226032 A G . alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar DB;ECNT=3;HCNT=24;MAX_ED=49;MIN_ED=45;NLOD=1.54;TLOD=5.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:54,3:0.043:2:1:0.333:0|1:8983605_T_C:1934,117:29:25 0/0:37,2:0.057:1:1:0.500:0|1:8983605_T_C:1378,80:19:18
chr4 9250274 . G A . alt_allele_in_normal ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=4.99;TLOD=14.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:66,10:0.101:5:5:0.500:2670,343:28:38 0/0:213,17:0.060:8:9:0.471:8804,616:107:106
chr4 9250331 . C T . alt_allele_in_normal ECNT=1;HCNT=7;MAX_ED=.;MIN_ED=.;NLOD=74.34;TLOD=7.27 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:119,7:0.054:1:6:0.857:4761,257:54:65 0/0:587,19:0.016:12:7:0.368:23540,669:285:302
chr4 9433489 . C A . alt_allele_in_normal;clustered_events ECNT=2;HCNT=3;MAX_ED=16;MIN_ED=16;NLOD=3.91;TLOD=6.44 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:14,2:0.133:2:0:0.00:0|1:9433489_C_A:533,80:8:6 0/0:16,1:0.071:0:1:1.00:0|1:9433489_C_A:647,32:6:10
chr4 9433505 . G A . alt_allele_in_normal;clustered_events ECNT=2;HCNT=3;MAX_ED=16;MIN_ED=16;NLOD=3.91;TLOD=6.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:16,2:0.118:2:0:1.00:0|1:9433489_C_A:516,76:10:6 0/0:18,1:0.071:0:1:0.00:0|1:9433489_C_A:627,40:7:11
chr4 16504812 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,3:0.095:0:3:1.00:924,105:10:13 0/0:21,0:0.00:0:0:.:870,0:9:12
chr4 21305529 . T A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.49;TLOD=30.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:34,15:0.257:5:10:0.333:1256,596:15:19 0/0:50,0:0.00:0:0:.:1902,0:21:29
chr4 25032261 . CCAG C . alt_allele_in_normal;germline_risk;str_contraction ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.09;RPA=6,5;RU=CAG;STR;TLOD=15.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:31,5:0.161:1:4:.:1184,192:16:15 0/0:29,1:0.045:1:0:.:1150,42:17:12
chr4 26432513 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=21.97;TLOD=4.30 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:122,4:0.022:2:2:0.500:4759,143:54:68 0/0:98,0:0.00:0:0:.:3869,0:45:53
chr4 36285698 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=5.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,2:0.105:2:0:0.00:627,72:11:8 0/0:23,0:0.00:0:0:.:878,0:14:9
chr4 38237981 rs6857949 A G . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar DB;ECNT=3;HCNT=1;MAX_ED=47;MIN_ED=44;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,1:1.00:0:1:1.00:0,41:0:0 0/0:3,0:0.00:0:0:.:113,0:1:2
chr4 38238025 rs148154896 C T . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar DB;ECNT=3;HCNT=3;MAX_ED=47;MIN_ED=44;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0|1:38238025_C_T:0,70:0:0 0/0:4,0:0.00:0:0:.:0|1:38238025_C_T:153,0:2:2
chr4 38238028 rs6814728 T C . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar DB;ECNT=3;HCNT=3;MAX_ED=47;MIN_ED=44;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0|1:38238025_C_T:0,78:0:0 0/0:4,0:0.00:0:0:.:0|1:38238025_C_T:158,0:2:2
chr4 38777875 rs10029775 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=6.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,2:0.333:1:1:0.500:230,75:4:2 0/0:7,0:0.00:0:0:.:285,0:5:2
chr4 40438931 rs12503550 T C . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=40.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:12,12:0.550:3:9:0.250:434,458:4:8 0/0:12,0:0.00:0:0:.:445,0:1:11
chr4 44996734 rs11730391 G A . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=62;MIN_ED=62;NLOD=1.20;TLOD=6.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,2:0.500:0:2:0.00:76,65:3:0 0/0:6,0:0.00:0:0:.:239,0:2:4
chr4 44996796 rs11727488 T A . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=62;MIN_ED=62;NLOD=0.903;TLOD=7.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,2:0.500:0:2:0.00:112,73:3:0 0/0:5,0:0.00:0:0:.:186,0:1:4
chr4 45158857 . T C . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,73:0:0 0/0:4,0:0.00:0:0:.:160,0:2:2
chr4 48420091 rs144101218 TTTC T . germline_risk;str_contraction DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;RPA=6,5;RU=TTC;STR;TLOD=7.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,3:0.333:0:3:.:271,113:1:6 0/0:6,0:0.00:0:0:.:241,0:4:2
chr4 49235786 rs507910 G T . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=11.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,5:0.750:3:2:0.600:27,181:0:1 0/0:8,0:0.00:0:0:.:309,0:4:4
chr4 49244785 rs202153160 T C . clustered_events DB;ECNT=2;HCNT=4;MAX_ED=4;MIN_ED=4;NLOD=3.61;TLOD=32.79 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:13,8:0.409:1:7:0.125:0|1:49244785_T_C:473,299:5:8 0/0:19,0:0.00:0:0:.:0|1:49244785_T_C:725,0:11:8
chr4 49244789 rs200442562 C T . clustered_events DB;ECNT=2;HCNT=4;MAX_ED=4;MIN_ED=4;NLOD=3.61;TLOD=28.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:15,10:0.381:2:8:0.800:0|1:49244785_T_C:566,332:5:10 0/0:19,0:0.00:0:0:.:0|1:49244785_T_C:782,0:10:9
chr4 49504682 . A G . alt_allele_in_normal;clustered_events ECNT=4;HCNT=16;MAX_ED=91;MIN_ED=38;NLOD=2.72;TLOD=6.44 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,2:0.133:0:2:1.00:537,79:6:9 0/0:25,2:0.042:0:2:1.00:960,78:13:12
chr4 49504720 rs373600959 T C . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=4;HCNT=16;MAX_ED=91;MIN_ED=38;NLOD=3.63;TLOD=4.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,2:0.154:0:2:0.00:513,80:6:8 0/0:30,2:0.036:0:2:0.00:1153,77:15:15
chr4 49504734 rs7438353 T A . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=4;HCNT=16;MAX_ED=91;MIN_ED=38;NLOD=3.33;TLOD=4.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,2:0.154:0:2:0.00:518,78:6:8 0/0:31,2:0.036:0:2:0.00:1180,83:15:16
chr4 49504773 rs369654085 G A . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=4;HCNT=16;MAX_ED=91;MIN_ED=38;NLOD=2.43;TLOD=4.54 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:17,2:0.125:0:2:0.00:667,74:8:9 0/0:41,3:0.051:1:2:0.333:1625,107:17:24
chr4 49515917 rs9715136 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.07 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,73:0:0 0/0:4,0:0.00:0:0:.:151,0:1:3
chr4 49563325 rs75028798 T G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,2:0.333:1:1:0.500:223,69:3:3 0/0:8,0:0.00:0:0:.:292,0:4:4
chr4 55830243 . A G . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,76:0:0 0/0:5,0:0.00:0:0:.:197,0:1:4
chr4 56227367 rs13120635 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.667:2:0:1.00:72,74:2:0 0/0:5,0:0.00:0:0:.:185,0:1:4
chr4 57244250 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=5.24 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,3:0.091:2:1:0.667:881,107:10:13 0/0:24,0:0.00:0:0:.:988,0:11:13
chr4 57842768 . G C . PASS ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=35.82;TLOD=56.67 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:146,26:0.136:11:15:0.423:5558,1009:79:67 0/0:147,0:0.00:0:0:.:5830,0:65:82
chr4 66959986 . G A . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=10.53;TLOD=5.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,2:0.054:1:1:0.500:1412,76:22:18 0/0:43,0:0.00:0:0:.:1629,0:27:16
chr4 70066306 rs200852364 T C . t_lod_fstar DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=21.33;TLOD=5.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:64,4:0.060:2:2:0.500:2340,148:25:39 0/0:93,1:0.00:0:1:0.00:3517,34:47:46
chr4 70152657 . T C . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.919;TLOD=6.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:26,2:0.083:2:0:1.00:876,44:7:19 0/0:20,1:0.056:1:0:1.00:738,20:7:13
chr4 76256635 . GCA G . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar ECNT=3;HCNT=1;MAX_ED=10;MIN_ED=3;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:.:0|1:76256635_GCA_G:0,81:0:0 0/0:3,0:0.00:0:0:.:0|1:76256635_GCA_G:123,0:2:1
chr4 76256638 . T TGC . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar ECNT=3;HCNT=1;MAX_ED=10;MIN_ED=3;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:.:0|1:76256635_GCA_G:0,74:0:0 0/0:3,0:0.00:0:0:.:0|1:76256635_GCA_G:116,0:2:1
chr4 76256645 rs6856404 A C . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar DB;ECNT=3;HCNT=1;MAX_ED=10;MIN_ED=3;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0|1:76256635_GCA_G:0,58:0:0 0/0:3,0:0.00:0:0:.:0|1:76256635_GCA_G:124,0:2:1
chr4 77304022 rs6820797 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=17.98 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:1:3:0.750:0,163:0:0 0/0:6,0:0.00:0:0:.:219,0:5:1
chr4 81123249 . CCAG C . str_contraction;t_lod_fstar ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=23.74;RPA=6,5;RU=CAG;STR;TLOD=4.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:110,4:0.023:4:0:.:4350,164:59:51 0/0:109,0:0.00:0:0:.:4296,0:62:47
chr4 82065566 rs7687935 A T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=10.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.600:2:1:0.333:69,106:1:1 0/0:8,0:0.00:0:0:.:302,0:4:4
chr4 88284972 rs7667870 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,79:0:0 0/0:5,0:0.00:0:0:.:182,0:0:5
chr4 88531913 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=5.67 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.333:1:1:0.500:155,67:3:1 0/0:6,0:0.00:0:0:.:242,0:4:2
chr4 89618911 . A C . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,3:0.154:2:1:0.333:518,96:9:5 0/0:23,0:0.00:0:0:.:882,0:18:5
chr4 89907604 rs7691363 C T . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=8.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,72:0:0 0/0:4,0:0.00:0:0:.:144,0:0:4
chr4 92108982 . G A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,69:0:0 0/0:4,0:0.00:0:0:.:162,0:3:1
chr4 95009041 rs187038392 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=7.63 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.667:2:2:0.500:28,152:1:0 0/0:4,0:0.00:0:0:.:152,0:2:2
chr4 97133894 rs6826156 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.73 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,3:0.286:3:0:0.00:294,107:3:5 0/0:10,0:0.00:0:0:.:389,0:7:3
chr4 100109961 rs13121905 A C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=15.76 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,4:0.571:1:3:0.750:126,163:1:3 0/0:4,0:0.00:0:0:.:158,0:3:1
chr4 103649656 rs145595213 A AG . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.26 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,3:0.286:3:0:.:176,114:2:3 0/0:5,0:0.00:0:0:.:190,0:3:2
chr4 122997602 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=5.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,1:0.095:0:1:1.00:864,40:11:12 0/0:28,0:0.00:0:0:.:1131,0:15:13
chr4 130054672 rs145582391 T TACTTCCAGCAATACAGGA . PASS DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=15.54 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,3:0.500:1:2:.:175,106:3:2 0/0:11,0:0.00:0:0:.:400,0:7:4
chr4 138655127 rs188111850 T C . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.500:1:1:0.500:118,73:2:2 0/0:4,0:0.00:0:0:.:153,0:2:2
chr4 140654989 rs907322 A C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.333:0,106:0:0 0/0:6,0:0.00:0:0:.:228,0:6:0
chr4 146076803 . A T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=5.68 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:17,1:0.143:0:1:1.00:629,10:12:5 0/0:39,0:0.00:0:0:.:1586,0:22:17
chr4 150916969 . G T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,72:0:0 0/0:4,0:0.00:0:0:.:150,0:4:0
chr4 153976787 rs6813595 C G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:1:1:0.500:81,74:2:0 0/0:4,0:0.00:0:0:.:167,0:3:1
chr4 155512059 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.28;TLOD=4.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:36,2:0.061:1:1:0.500:1317,72:18:18 0/0:38,0:0.00:0:0:.:1402,0:24:14
chr4 160042305 rs13127567 G C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=5.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,52:0:0 0/0:4,0:0.00:0:0:.:154,0:4:0
chr4 160962422 . T C . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,82:0:0 0/0:4,0:0.00:0:0:.:157,0:3:1
chr4 163264332 rs181190753 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:36,65:0:1 0/0:6,0:0.00:0:0:.:221,0:6:0
chr4 166200830 . C T . t_lod_fstar ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=14.15;TLOD=4.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:74,4:0.036:0:4:1.00:2944,142:33:41 0/0:59,0:0.00:0:0:.:2386,0:30:29
chr4 171054405 rs74578519 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.902;TLOD=8.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:0:3:0.00:0,119:0:0 0/0:4,0:0.00:0:0:.:135,0:2:2
chr4 185329365 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.69;TLOD=4.24 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:42,4:0.061:4:0:1.00:1451,134:22:20 0/0:45,0:0.00:0:0:.:1618,0:26:19
chr4 185686948 . AAC A . alt_allele_in_normal;str_contraction;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.58;RPA=9,8;RU=AC;STR;TLOD=5.14 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:45,7:0.098:2:5:.:1594,250:21:24 0/0:70,3:0.035:2:1:.:2710,116:30:40
chr4 186456590 . C T . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=18.36;TLOD=4.68 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:42,3:0.061:0:3:1.00:1633,107:23:19 0/0:86,0:0.00:0:0:.:3431,0:45:41
chr4 189310768 rs12510602 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.27;TLOD=11.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,4:0.364:1:3:0.250:298,131:3:5 0/0:12,0:0.00:0:0:.:444,0:9:3
chr4 190646652 rs2318600 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=5.92 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.667:0:3:1.00:41,105:1:0 0/0:7,0:0.00:0:0:.:265,0:3:4
chr5 251748 rs201097697 C T . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=23;MAX_ED=20;MIN_ED=20;NLOD=13.26;TLOD=6.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:123,6:0.031:3:3:0.500:0|1:251748_C_T:4619,233:66:57 0/0:72,2:0.017:2:0:0.00:0|1:251748_C_T:2827,80:38:34
chr5 251768 rs370305758 T G . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=2;HCNT=23;MAX_ED=20;MIN_ED=20;NLOD=12.36;TLOD=4.91 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:99,6:0.024:3:3:0.500:0|1:251748_C_T:3662,238:52:47 0/0:65,2:0.018:2:0:1.00:0|1:251748_C_T:2601,86:32:33
chr5 979412 rs368980648 AAC A . germline_risk;str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.81;RPA=7,6;RU=AC;STR;TLOD=4.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,2:0.080:2:0:.:882,80:10:13 0/0:17,0:0.00:0:0:.:690,0:9:8
chr5 1160435 rs141202269 GGA G . germline_risk;str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.18;RPA=9,8;RU=GA;STR;TLOD=4.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:25,6:0.130:0:6:.:944,217:14:11 0/0:19,0:0.00:0:0:.:705,0:13:6
chr5 1342771 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,74:0:0 0/0:5,0:0.00:0:0:.:202,0:4:1
chr5 1572380 rs372327959 CAA C . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=8.90;RPA=3,1;RU=A;STR;TLOD=5.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:58,3:0.040:1:2:.:2265,106:25:33 0/0:80,3:0.033:0:3:.:3189,127:45:35
chr5 1641346 rs6867862 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.92 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,5:0.600:2:3:0.600:72,167:1:1 0/0:5,0:0.00:0:0:.:189,0:1:4
chr5 14602398 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=5.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,3:0.111:0:3:0.00:762,107:6:14 0/0:22,0:0.00:0:0:.:905,0:14:8
chr5 16516989 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.556;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,73:0:0 0/0:4,0:0.00:0:0:.:119,0:0:4
chr5 21482111 rs201075852 A G . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=2;MAX_ED=77;MIN_ED=77;NLOD=4.84;TLOD=11.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:159,9:0.045:8:1:0.111:5700,350:88:71 0/0:182,12:0.061:8:4:0.333:6857,473:96:86
chr5 21482188 rs201724118 C G . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=3;MAX_ED=77;MIN_ED=77;NLOD=3.65;TLOD=39.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:144,18:0.118:10:8:0.444:5429,679:76:68 0/0:186,17:0.065:9:8:0.471:7374,666:92:94
chr5 21482691 . T C . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=83.89;TLOD=5.14 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:304,11:0.020:5:6:0.455:10519,442:135:169 0/0:351,6:0.00:2:4:0.333:13102,248:165:186
chr5 21482877 . G C . alt_allele_in_normal ECNT=1;HCNT=9;MAX_ED=.;MIN_ED=.;NLOD=51.28;TLOD=14.96 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:298,14:0.034:6:8:0.429:11642,567:142:156 0/0:347,14:0.024:5:9:0.357:14100,585:178:169
chr5 32143879 . T C . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=5.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:30,2:0.080:1:1:0.500:1009,74:15:15 0/0:29,0:0.00:0:0:.:1069,0:12:17
chr5 33456340 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=5.24 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,4:0.154:2:2:0.500:535,147:7:7 0/0:20,0:0.00:0:0:.:779,0:9:11
chr5 34190692 rs3932538 C A . alt_allele_in_normal;germline_risk;t_lod_fstar DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.69;TLOD=5.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:167,7:0.031:6:1:0.143:6600,263:84:83 0/0:131,11:0.073:4:7:0.636:5303,431:70:61
chr5 34192051 rs377355220 T C . alt_allele_in_normal DB;ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=8.45;TLOD=22.51 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:106,14:0.117:7:7:0.500:3855,492:46:60 0/0:202,12:0.048:2:10:0.167:7710,497:108:94
chr5 37052613 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.38;TLOD=4.64 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:29,2:0.100:1:1:0.500:994,65:9:20 0/0:33,0:0.00:0:0:.:1121,0:20:13
chr5 38406203 . G A . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=14.75;TLOD=5.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:66,3:0.039:3:0:1.00:2487,119:38:28 0/0:61,0:0.00:0:0:.:2403,0:23:38
chr5 39097708 rs358512 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.500:0:3:1.00:60,110:2:0 0/0:5,0:0.00:0:0:.:187,0:4:1
chr5 39169773 rs4957359 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,3:0.429:1:2:0.333:219,111:2:4 0/0:4,0:0.00:0:0:.:154,0:1:3
chr5 39719446 rs10512714 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.16;TLOD=7.07 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:1:1:0.500:75,74:1:1 0/0:4,0:0.00:0:0:.:126,0:1:3
chr5 41160338 rs111980961 G A . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.14;TLOD=4.49 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:71,3:0.035:3:0:1.00:2779,108:38:33 0/0:43,0:0.00:0:0:.:1714,0:19:24
chr5 42467603 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.13;TLOD=4.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:43,2:0.051:0:2:0.00:1562,73:21:22 0/0:34,0:0.00:0:0:.:1268,0:20:14
chr5 42715499 rs2910878 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=11.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.600:2:1:0.333:67,120:0:2 0/0:6,0:0.00:0:0:.:224,0:2:4
chr5 42719072 rs200084031 C T . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=4.87 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,3:0.067:0:3:1.00:1324,106:14:21 0/0:37,0:0.00:0:0:.:1482,0:27:10
chr5 43652072 rs3805723 G T . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=7.04 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,2:0.286:0:2:0.00:234,79:2:4 0/0:6,0:0.00:0:0:.:229,0:3:3
chr5 55410304 . C A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,75:0:0 0/0:4,0:0.00:0:0:.:163,0:4:0
chr5 60789973 rs145935854 GGA G . str_contraction;t_lod_fstar DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=3.91;RPA=8,7;RU=GA;STR;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,2:0.154:1:1:.:461,64:3:11 0/0:16,0:0.00:0:0:.:578,0:8:8
chr5 65466355 . C A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,54:0:0 0/0:5,0:0.00:0:0:.:201,0:1:4
chr5 68930854 . G C . alt_allele_in_normal ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=17.06;TLOD=7.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:86,5:0.066:3:2:0.600:3096,195:46:40 0/0:225,13:0.048:7:6:0.538:8360,514:124:101
chr5 69826350 . G T . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.36;TLOD=5.84 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,3:0.250:1:2:0.333:425,91:5:9 0/0:23,1:0.048:1:0:1.00:850,39:12:11
chr5 70357311 . C T . alt_allele_in_normal;germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.977;TLOD=9.16 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:22,4:0.154:2:2:0.500:875,139:9:13 0/0:44,3:0.065:1:2:0.667:1807,108:24:20
chr5 70422954 . C T . germline_risk ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:0:2:1.00:82,72:2:0 0/0:6,0:0.00:0:0:.:215,0:5:1
chr5 79596364 . G GTCCCTCTCCCTC . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.70;RPA=4,6;RU=TCCCTC;STR;TLOD=7.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,2:0.333:2:0:.:225,82:5:1 0/0:9,0:0.00:0:0:.:361,0:4:5
chr5 79796674 . T C . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,76:0:0 0/0:4,0:0.00:0:0:.:154,0:4:0
chr5 85580610 . A G . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=2;HCNT=8;MAX_ED=6;MIN_ED=6;NLOD=7.57;TLOD=5.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:61,3:0.044:1:2:0.667:0|1:85580610_A_G:2366,108:27:34 0/0:86,4:0.043:2:2:0.500:0|1:85580610_A_G:3479,163:38:48
chr5 85580616 . T C . alt_allele_in_normal;clustered_events ECNT=2;HCNT=8;MAX_ED=6;MIN_ED=6;NLOD=8.17;TLOD=7.56 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:61,4:0.065:1:3:0.250:0|1:85580610_A_G:2230,152:27:34 0/0:86,4:0.042:2:2:0.500:0|1:85580610_A_G:3262,163:37:49
chr5 85580703 rs200401458 C T . alt_allele_in_normal DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.90;TLOD=8.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:33,4:0.129:2:2:0.500:1263,147:20:13 0/0:69,3:0.036:2:1:0.333:2708,116:30:39
chr5 85915201 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.87;TLOD=4.07 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:12,2:0.154:1:1:0.500:437,47:8:4 0/0:15,0:0.00:0:0:.:572,0:6:9
chr5 87521683 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=5.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,1:0.080:0:1:1.00:1363,34:23:12 0/0:16,0:0.00:0:0:.:626,0:5:11
chr5 94820379 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=5.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,1:0.111:0:1:1.00:755,34:11:8 0/0:19,0:0.00:0:0:.:732,0:14:5
chr5 98858288 . G A . alt_allele_in_normal;clustered_events;germline_risk ECNT=3;HCNT=1;MAX_ED=34;MIN_ED=9;NLOD=1.37;TLOD=8.94 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:31,4:0.107:1:3:0.250:0|1:98858288_G_A:1068,155:18:13 0/0:60,4:0.051:0:4:0.00:0|1:98858288_G_A:2203,158:38:22
chr5 98858297 rs2963617 A G . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=1;MAX_ED=34;MIN_ED=9;NLOD=9.52;TLOD=9.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:31,3:0.103:1:2:0.667:0|1:98858288_G_A:1129,119:17:14 0/0:60,2:0.034:0:2:1.00:0|1:98858288_G_A:2290,83:38:22
chr5 98858322 rs201452857 A G . clustered_events;multi_event_alt_allele_in_normal DB;ECNT=3;HCNT=1;MAX_ED=34;MIN_ED=9;NLOD=15.95;TLOD=9.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:37,2:0.083:1:1:0.500:0|1:98858288_G_A:1294,75:17:20 0/0:72,1:0.00:0:1:1.00:0|1:98858288_G_A:2717,37:39:33
chr5 99403353 rs141758172 C G . PASS DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=6.94 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,2:0.286:0:2:1.00:227,78:5:1 0/0:11,0:0.00:0:0:.:442,0:4:7
chr5 101813464 . C T . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.24;TLOD=18.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,9:0.189:5:4:0.444:1408,319:20:17 0/0:60,0:0.00:0:0:.:2400,0:32:28
chr5 102826196 rs201796339 TTCCCTTCCTCCC T . germline_risk;str_contraction DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.868;RPA=2,1;RU=TCCCTTCCTCCC;STR;TLOD=7.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.500:2:0:.:158,76:2:2 0/0:4,0:0.00:0:0:.:155,0:1:3
chr5 104670231 rs12658979 C A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=7.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,2:0.500:0:2:1.00:96,75:1:2 0/0:7,0:0.00:0:0:.:292,0:3:4
chr5 108372994 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=5.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,1:0.154:0:1:1.00:496,34:2:12 0/0:22,0:0.00:0:0:.:892,0:9:13
chr5 115346513 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.59;TLOD=5.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:26,3:0.087:2:1:0.667:1016,106:10:16 0/0:38,0:0.00:0:0:.:1511,0:17:21
chr5 124199548 rs34045358 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=15.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,6:0.571:3:3:0.500:178,230:1:4 0/0:5,0:0.00:0:0:.:182,0:3:2
chr5 124692842 rs1579811 T C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,82:0:0 0/0:5,0:0.00:0:0:.:191,0:1:4
chr5 131214213 . T C . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,82:0:0 0/0:4,0:0.00:0:0:.:154,0:1:3
chr5 131714344 rs5871452 A AATC . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;RPA=1,2;RU=ATC;STR;TLOD=20.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,5:0.833:1:4:.:35,182:1:0 0/0:3,0:0.00:0:0:.:120,0:0:3
chr5 131796515 . C T . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=10.84;TLOD=4.54 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:50,3:0.047:1:2:0.667:1890,106:22:28 0/0:44,0:0.00:0:0:.:1826,0:19:25
chr5 138860899 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.16;TLOD=4.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:80,3:0.032:2:1:0.667:2835,111:41:39 0/0:83,0:0.00:0:0:.:3044,0:38:45
chr5 139927136 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=5.36 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,2:0.083:2:0:1.00:908,74:8:15 0/0:23,0:0.00:0:0:.:911,0:5:18
chr5 140754148 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.04;TLOD=13.91 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,6:0.172:3:3:0.500:1020,213:17:10 0/0:45,0:0.00:0:0:.:1769,0:18:27
chr5 140763131 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.45;TLOD=4.16 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:78,3:0.034:0:3:0.00:2742,101:37:41 0/0:60,0:0.00:0:0:.:2230,0:29:31
chr5 140865863 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=26.49;TLOD=4.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:90,4:0.029:0:4:1.00:3556,131:50:40 0/0:115,0:0.00:0:0:.:4725,0:59:56
chr5 141022632 . GGGA G . str_contraction ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.43;RPA=2,1;RU=GGA;STR;TLOD=23.71 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:39,13:0.189:7:6:.:1542,467:22:17 0/0:45,0:0.00:0:0:.:1862,0:27:18
chr5 141024437 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.39;TLOD=4.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,3:0.063:3:0:0.00:1212,108:23:12 0/0:40,0:0.00:0:0:.:1398,0:21:19
chr5 147817860 . T C . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=5.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,2:0.222:0:2:0.00:243,67:1:6 0/0:10,0:0.00:0:0:.:386,0:7:3
chr5 148466923 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,70:0:0 0/0:5,0:0.00:0:0:.:209,0:3:2
chr5 148596841 rs2918278 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=15.67 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,5:0.500:4:1:0.800:201,163:1:4 0/0:4,0:0.00:0:0:.:153,0:0:4
chr5 148743783 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.65;TLOD=4.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:61,3:0.042:1:2:0.333:2376,108:44:17 0/0:71,0:0.00:0:0:.:2877,0:46:25
chr5 149433772 . G A . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=19.22;TLOD=4.54 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:89,3:0.029:1:2:0.333:3461,107:41:48 0/0:82,0:0.00:0:0:.:3262,0:45:37
chr5 149747247 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=5.73 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,3:0.154:0:3:1.00:605,107:6:10 0/0:25,0:0.00:0:0:.:1026,0:14:11
chr5 149900864 rs139789204 G A . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.62;TLOD=4.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:88,3:0.030:2:1:0.667:2993,105:46:42 0/0:99,0:0.00:0:0:.:3585,0:48:51
chr5 152131689 . T C . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,72:0:0 0/0:4,0:0.00:0:0:.:157,0:2:2
chr5 154870737 rs1647596 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:2:1:0.333:114,94:0:3 0/0:5,0:0.00:0:0:.:189,0:1:4
chr5 157899616 rs2901003 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.85 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.333:0,105:0:0 0/0:5,0:0.00:0:0:.:196,0:5:0
chr5 160063452 rs147139408 CTG C . germline_risk;str_contraction DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.40;RPA=7,6;RU=TG;STR;TLOD=7.27 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,3:0.250:1:2:.:390,119:4:6 0/0:24,0:0.00:0:0:.:969,0:7:17
chr5 168043633 rs200869447 T C . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.53;TLOD=5.77 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,4:0.118:0:4:0.00:1292,151:18:17 0/0:30,2:0.038:2:0:1.00:1166,84:17:13
chr5 168216489 rs2247645 G A . PASS DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=11.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,3:0.500:1:2:0.333:154,115:1:3 0/0:10,0:0.00:0:0:.:410,0:5:5
chr5 169595868 rs874245 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=7.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.667:0:3:0.00:83,108:2:0 0/0:4,0:0.00:0:0:.:162,0:0:4
chr5 170222434 rs202079975 G A . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.38;TLOD=4.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:43,3:0.059:3:0:1.00:1567,108:23:20 0/0:34,0:0.00:0:0:.:1249,0:18:16
chr5 172089294 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=5.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:18,3:0.118:0:3:1.00:613,112:9:9 0/0:29,0:0.00:0:0:.:1023,0:14:15
chr5 175467742 rs28525414 T C . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.66;TLOD=4.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:28,2:0.087:2:0:1.00:1021,64:11:17 0/0:39,1:0.031:0:1:0.00:1444,35:17:22
chr5 175520358 rs201658247 C A . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.67;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,3:0.214:1:2:0.667:404,114:5:6 0/0:35,2:0.042:0:2:1.00:1297,72:15:20
chr5 175927262 rs377249587 CAG C . str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.44;RPA=9,8;RU=AG;STR;TLOD=5.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,3:0.300:2:1:.:375,126:6:4 0/0:17,0:0.00:0:0:.:678,0:10:7
chr5 176520291 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=18.87;TLOD=4.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:47,2:0.043:1:1:0.500:1463,69:28:19 0/0:69,0:0.00:0:0:.:2399,0:40:29
chr5 176722305 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=24.03;TLOD=4.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:75,3:0.033:3:0:1.00:2925,105:38:37 0/0:103,0:0.00:0:0:.:4120,0:52:51
chr5 177631783 rs17080447 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.500:3:0:1.00:65,108:1:1 0/0:4,0:0.00:0:0:.:135,0:3:1
chr5 177811471 rs55752205 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,74:0:0 0/0:4,0:0.00:0:0:.:168,0:4:0
chr5 178213713 rs10455076 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=7.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:2:0:0.00:73,79:1:1 0/0:3,0:0.00:0:0:.:116,0:1:2
chr5 179287207 rs148609553 CGT C . alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.40;RPA=9,8;RU=GT;STR;TLOD=4.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,3:0.136:0:3:.:836,111:14:9 0/0:35,3:0.094:0:3:.:1266,112:22:13
chr5 179528918 rs7724876 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=7.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:1:2:0.333:114,82:0:3 0/0:6,0:0.00:0:0:.:239,0:4:2
chr5 180047918 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.89;TLOD=5.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,2:0.059:0:2:1.00:1392,76:17:20 0/0:39,0:0.00:0:0:.:1491,0:25:14
chr5 180470292 rs370084606 CTG C . alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.59;RPA=9,8;RU=TG;STR;TLOD=4.37 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,4:0.143:4:0:.:1054,157:15:12 0/0:22,1:0.048:1:0:.:863,38:10:12
chr6 1060449 rs368748926 TAC T . str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.90;RPA=8,7;RU=AC;STR;TLOD=5.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,4:0.130:3:1:.:967,144:17:10 0/0:15,0:0.00:0:0:.:560,0:6:9
chr6 3179987 rs200066252 C A . t_lod_fstar DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=5.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:47,4:0.083:1:3:0.750:1912,142:32:15 0/0:25,0:0.00:0:0:.:1026,0:11:14
chr6 3250928 . G T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,76:0:0 0/0:4,0:0.00:0:0:.:162,0:1:3
chr6 4635950 rs9502211 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:1:2:0.667:0,104:0:0 0/0:5,0:0.00:0:0:.:198,0:4:1
chr6 7271476 rs9505100 T C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,78:0:0 0/0:4,0:0.00:0:0:.:156,0:0:4
chr6 10286307 rs4712509 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,73:0:0 0/0:4,0:0.00:0:0:.:149,0:1:3
chr6 10866702 rs78076640 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=8.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:1:2:0.333:0,106:0:0 0/0:5,0:0.00:0:0:.:174,0:4:1
chr6 13592050 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=25.54;TLOD=4.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:95,3:0.027:3:0:1.00:3728,107:52:43 0/0:113,0:0.00:0:0:.:4517,0:52:61
chr6 15525109 rs3215464 C CT . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.904;RPA=2,3;RU=T;STR;TLOD=5.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,2:0.400:1:1:.:102,78:3:0 0/0:3,0:0.00:0:0:.:119,0:0:3
chr6 16100087 . GGAGGAA G . germline_risk;str_contraction;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;RPA=3,2;RU=GAGGAA;STR;TLOD=4.47 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,9:0.667:8:1:.:110,325:2:1 0/0:4,0:0.00:0:0:.:165,0:0:4
chr6 17637992 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.04;TLOD=4.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,2:0.067:0:2:0.00:1377,71:19:18 0/0:49,0:0.00:0:0:.:1844,0:25:24
chr6 17825888 rs7771879 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=23.92 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,6:0.667:5:1:0.833:109,237:3:0 0/0:5,0:0.00:0:0:.:192,0:1:4
chr6 25023966 rs9358823 A T . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=8.85 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,79:0:0 0/0:3,0:0.00:0:0:.:117,0:2:1
chr6 26271424 . G A . PASS ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=41.19;TLOD=10.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:223,11:0.029:4:7:0.364:8858,401:124:99 0/0:175,0:0.00:0:0:.:7079,0:95:80
chr6 26501598 rs112012632 GTC G . alt_allele_in_normal;str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.21;RPA=7,6;RU=TC;STR;TLOD=5.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:39,4:0.094:3:1:.:1534,151:25:14 0/0:52,2:0.024:2:0:.:2059,78:24:28
chr6 27100703 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=5.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,2:0.069:1:1:0.500:866,76:12:15 0/0:18,0:0.00:0:0:.:627,0:7:11
chr6 27730035 . G A . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.78;TLOD=11.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,6:0.121:2:4:0.333:1201,202:16:19 0/0:32,0:0.00:0:0:.:1107,0:17:15
chr6 29857105 . A AC . alt_allele_in_normal ECNT=1;HCNT=18;MAX_ED=.;MIN_ED=.;NLOD=6.24;RPA=8,9;RU=C;STR;TLOD=11.24 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:247,42:0.159:24:15:.:7750,1158:128:116 0/0:211,45:0.186:23:22:.:7015,1431:99:110
chr6 33632754 . T C . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=13.36;TLOD=5.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:49,3:0.044:1:2:0.333:1554,110:27:22 0/0:54,2:0.021:2:0:1.00:1876,18:33:21
chr6 36285313 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=4.19 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,2:0.095:2:0:1.00:894,61:11:12 0/0:22,0:0.00:0:0:.:882,0:11:11
chr6 36414308 rs6457918 A T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,71:0:0 0/0:4,0:0.00:0:0:.:154,0:2:2
chr6 36712808 . G A . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=22.57;TLOD=4.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:109,4:0.024:4:0:1.00:3733,145:59:50 0/0:97,0:0.00:0:0:.:3536,0:66:31
chr6 36932327 rs1063021 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.500:3:0:0.00:74,120:2:0 0/0:4,0:0.00:0:0:.:160,0:1:3
chr6 37147504 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,48:0:0 0/0:7,0:0.00:0:0:.:258,0:4:3
chr6 37418263 rs2270687 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=13.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,5:0.667:4:1:0.200:74,170:2:0 0/0:6,0:0.00:0:0:.:244,0:3:3
chr6 41166075 rs35512890 C T . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=8;MAX_ED=23;MIN_ED=23;NLOD=4.41;TLOD=24.70 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:76,14:0.157:5:9:0.643:2652,487:46:30 0/0:78,5:0.057:3:2:0.400:2761,186:42:36
chr6 41166098 . G A . clustered_events;t_lod_fstar ECNT=2;HCNT=14;MAX_ED=23;MIN_ED=23;NLOD=18.01;TLOD=4.87 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:73,1:0.050:1:0:1.00:2746,36:43:30 0/0:71,0:0.00:0:0:.:2730,0:41:30
chr6 41544741 . C A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,75:0:0 0/0:4,0:0.00:0:0:.:159,0:3:1
chr6 43226884 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.46;TLOD=16.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:84,12:0.103:8:4:0.333:2865,431:39:45 0/0:85,0:0.00:0:0:.:3149,0:43:42
chr6 44238445 . G T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,66:0:0 0/0:7,0:0.00:0:0:.:247,0:6:1
chr6 46173298 . C T . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=20.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,10:0.171:7:3:0.300:1354,360:18:22 0/0:38,0:0.00:0:0:.:1378,0:18:20
chr6 47220839 rs369860041 GGT G . germline_risk;str_contraction;t_lod_fstar DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=3.90;RPA=8,7;RU=GT;STR;TLOD=6.19 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,3:0.200:1:2:.:508,122:7:6 0/0:15,0:0.00:0:0:.:571,0:8:7
chr6 47251794 . TCGAGCTTTTC T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.79;TLOD=15.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,5:0.143:1:4:.:1379,174:20:17 0/0:53,0:0.00:0:0:.:2041,0:25:28
chr6 49604482 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=5.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,3:0.077:1:2:0.333:1383,109:19:16 0/0:30,0:0.00:0:0:.:1216,0:7:23
chr6 51214271 rs2478883 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=6.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,2:0.500:1:1:0.500:107,66:2:1 0/0:7,0:0.00:0:0:.:257,0:3:4
chr6 51935747 rs17576809 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=28.67 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,7:0.778:3:4:0.571:108,274:3:0 0/0:4,0:0.00:0:0:.:135,0:0:4
chr6 52141512 rs3765447 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.85 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:37,78:0:1 0/0:4,0:0.00:0:0:.:162,0:2:2
chr6 52550827 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.44;TLOD=5.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:38,2:0.071:1:1:0.500:1497,78:22:16 0/0:49,0:0.00:0:0:.:1977,0:29:20
chr6 53010700 rs9370179 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,73:0:0 0/0:4,0:0.00:0:0:.:145,0:1:3
chr6 53100374 rs2562889 G A . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.06;TLOD=10.84 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.600:1:3:0.250:87,135:0:3 0/0:10,0:0.00:0:0:.:315,0:4:6
chr6 57339256 rs6900203 A C . germline_risk DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:0:2:1.00:36,81:1:0 0/0:4,0:0.00:0:0:.:142,0:2:2
chr6 57407707 rs9464522 A G . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=1;MAX_ED=5;MIN_ED=5;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0|1:57407707_A_G:0,74:0:0 0/0:4,0:0.00:0:0:.:0|1:57407707_A_G:150,0:2:2
chr6 57407712 rs62399050 C G . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=1;MAX_ED=5;MIN_ED=5;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0|1:57407707_A_G:0,77:0:0 0/0:4,0:0.00:0:0:.:0|1:57407707_A_G:163,0:2:2
chr6 57457639 rs75626744 A G . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=5;HCNT=14;MAX_ED=26;MIN_ED=7;NLOD=1.20;TLOD=12.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.750:2:1:0.333:0|1:57457639_A_G:33,120:0:1 0/0:3,0:0.00:0:0:.:0|1:57457639_A_G:114,0:2:1
chr6 57457646 rs5008377 T C . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=5;HCNT=16;MAX_ED=26;MIN_ED=7;NLOD=1.51;TLOD=15.22 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.667:2:1:0.667:34,122:0:1 0/0:4,0:0.00:0:0:.:157,0:3:1
chr6 57457650 rs74959384 C A . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=5;HCNT=14;MAX_ED=26;MIN_ED=7;NLOD=1.50;TLOD=15.22 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.667:2:2:0.500:0|1:57457639_A_G:79,146:1:1 0/0:6,0:0.00:0:0:.:0|1:57457639_A_G:239,0:5:1
chr6 57457664 rs5008379 G A . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=5;HCNT=10;MAX_ED=26;MIN_ED=7;NLOD=2.11;TLOD=6.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:7,2:0.222:2:0:1.00:0|1:57457664_G_A:275,75:3:4 0/0:8,0:0.00:0:0:.:0|1:57457664_G_A:325,0:6:2
chr6 57457665 rs5008380 C T . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=5;HCNT=10;MAX_ED=26;MIN_ED=7;NLOD=2.11;TLOD=6.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:7,2:0.222:2:0:0.00:0|1:57457664_G_A:274,74:3:4 0/0:8,0:0.00:0:0:.:0|1:57457664_G_A:332,0:6:2
chr6 57466369 rs61580049 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=10.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.667:0,98:0:0 0/0:2,0:0.00:0:0:.:75,0:0:2
chr6 57481191 rs77536972 A G . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=7.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:3:0:0.00:0,101:0:0 0/0:7,0:0.00:0:0:.:279,0:5:2
chr6 57494558 rs7769008 T C . germline_risk DB;ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=7.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.667:1:1:0.500:76,72:0:2 0/0:4,0:0.00:0:0:.:154,0:4:0
chr6 58776517 rs9500442 G C . alt_allele_in_normal;germline_risk DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.22;TLOD=10.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,5:0.174:1:4:0.200:891,196:11:12 0/0:26,1:0.050:0:1:0.00:1036,41:17:9
chr6 58776821 rs9638020 C G . PASS DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=9.37 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,4:0.214:2:2:0.500:576,145:7:8 0/0:12,0:0.00:0:0:.:484,0:6:6
chr6 58777228 rs4513827 G T . t_lod_fstar DB;ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=5.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:17,2:0.125:2:0:1.00:632,70:11:6 0/0:17,0:0.00:0:0:.:700,0:9:8
chr6 58777506 rs4307196 T C . PASS DB;ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=9.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:22,3:0.150:1:2:0.333:796,119:10:12 0/0:22,0:0.00:0:0:.:837,0:7:15
chr6 58778178 rs28773232 C T . germline_risk DB;ECNT=1;HCNT=32;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=8.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,3:0.158:2:1:0.333:766,112:14:6 0/0:14,0:0.00:0:0:.:562,0:9:5
chr6 58778766 rs4928651 T A . t_lod_fstar DB;ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=5.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:25,2:0.083:1:1:0.500:922,79:8:17 0/0:10,0:0.00:0:0:.:389,0:7:3