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test_553.mutect2.vcf
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test_553.mutect2.vcf
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##fileformat=VCFv4.2
##FILTER=<ID=alt_allele_in_normal,Description="Evidence seen in the normal sample">
##FILTER=<ID=clustered_events,Description="Clustered events observed in the tumor">
##FILTER=<ID=clustered_read_position,Description="Evidence for somatic variant clusters near the ends of reads">
##FILTER=<ID=germline_risk,Description="Evidence indicates this site is germline, not somatic">
##FILTER=<ID=homologous_mapping_event,Description="More than three events were observed in the tumor">
##FILTER=<ID=multi_event_alt_allele_in_normal,Description="Multiple events observed in tumor and normal">
##FILTER=<ID=panel_of_normals,Description="Seen in at least 2 samples in the panel of normals">
##FILTER=<ID=str_contraction,Description="Site filtered due to contraction of short tandem repeat region">
##FILTER=<ID=strand_artifact,Description="Evidence for alt allele comes from one read direction only">
##FILTER=<ID=t_lod_fstar,Description="Tumor does not meet likelihood threshold">
##FILTER=<ID=triallelic_site,Description="Site filtered because more than two alt alleles pass tumor LOD">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=AF,Number=1,Type=Float,Description="Allele fraction of the event in the tumor">
##FORMAT=<ID=ALT_F1R2,Number=1,Type=Integer,Description="Count of reads in F1R2 pair orientation supporting the alternate allele">
##FORMAT=<ID=ALT_F2R1,Number=1,Type=Integer,Description="Count of reads in F2R1 pair orientation supporting the alternate allele">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=FOXOG,Number=1,Type=Float,Description="Fraction of alt reads indicating OxoG error">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another">
##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##FORMAT=<ID=QSS,Number=A,Type=Integer,Description="Sum of base quality scores for each allele">
##FORMAT=<ID=REF_F1R2,Number=1,Type=Integer,Description="Count of reads in F1R2 pair orientation supporting the reference allele">
##FORMAT=<ID=REF_F2R1,Number=1,Type=Integer,Description="Count of reads in F2R1 pair orientation supporting the reference allele">
##GATKCommandLine.MuTect2=<ID=MuTect2,Version=3.8-0-ge9d806836,Date="Thu May 31 22:45:04 GMT 2018",Epoch=1527806704873,CommandLineOptions="analysis_type=MuTect2 input_file=[data/553T.recal_reheader.bam, data/553N.recal_reheader.bam] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=data/ucsc.hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=false use_jdk_inflater=false disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false cosmic=[(RodBinding name=cosmic source=data/CosmicAllMutsHeaderSorted.vcf)] normal_panel=[] dbsnp=(RodBinding name=dbsnp source=data/dbsnp_138.hg19.vcf) m2debug=false artifact_detection_mode=false initial_tumor_lod=4.0 initial_normal_lod=0.5 tumor_lod=6.3 normal_lod=2.2 dbsnp_normal_lod=5.5 max_alt_alleles_in_normal_count=1 max_alt_alleles_in_normal_qscore_sum=20 max_alt_allele_in_normal_fraction=0.03 power_constant_qscore=30 strand_artifact_lod=2.0 strand_artifact_power_threshold=0.9 enable_strand_artifact_filter=false enable_clustered_read_position_filter=false pir_median_threshold=10.0 pir_mad_threshold=3.0 debug=false useFilteredReadsForAnnotations=false emitRefConfidence=NONE bamOutput=null bamWriterType=CALLED_HAPLOTYPES emitDroppedReads=false disableOptimizations=false annotateNDA=false useNewAFCalculator=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 heterozygosity_stdev=0.01 standard_min_confidence_threshold_for_calling=10.0 standard_min_confidence_threshold_for_emitting=30.0 max_alternate_alleles=6 max_genotype_count=1024 max_num_PL_values=100 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.02 contamination_fraction_per_sample_file=null p_nonref_model=null exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=false kmerSize=[10, 25] dontIncreaseKmerSizesForCycles=false allowNonUniqueKmersInRef=false numPruningSamples=1 recoverDanglingHeads=false doNotRecoverDanglingBranches=false minDanglingBranchLength=4 consensus=false maxNumHaplotypesInPopulation=128 errorCorrectKmers=false minPruning=2 debugGraphTransformations=false allowCyclesInKmerGraphToGeneratePaths=false graphOutput=null kmerLengthForReadErrorCorrection=25 minObservationsForKmerToBeSolid=20 gcpHMM=10 pair_hmm_implementation=FASTEST_AVAILABLE phredScaledGlobalReadMismappingRate=45 noFpga=false nativePairHmmThreads=1 useDoublePrecision=false debug_read_name=null MQ_filtering_level=20 comp=[] annotation=[DepthPerAlleleBySample, BaseQualitySumPerAlleleBySample, TandemRepeatAnnotator, OxoGReadCounts] excludeAnnotation=[SpanningDeletions] out=/data/553.mutect2.vcf dontTrimActiveRegions=false maxDiscARExtension=25 maxGGAARExtension=300 paddingAroundIndels=150 paddingAroundSNPs=20 keepRG=null min_base_quality_score=10 errorCorrectReads=false captureAssemblyFailureBAM=false dontUseSoftClippedBases=false justDetermineActiveRegions=false doNotRunPhysicalPhasing=false maxReadsInRegionPerSample=1000 minReadsPerAlignmentStart=5 activityProfileOut=null activeRegionOut=null activeRegionIn=null activeRegionExtension=null forceActive=false activeRegionMaxSize=null bandPassSigma=null maxReadsInMemoryPerSample=30000 maxTotalReadsInMemory=10000000 maxProbPropagationDistance=50 activeProbabilityThreshold=0.002 filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=ECNT,Number=1,Type=String,Description="Number of events in this haplotype">
##INFO=<ID=HCNT,Number=1,Type=String,Description="Number of haplotypes that support this variant">
##INFO=<ID=MAX_ED,Number=1,Type=Integer,Description="Maximum distance between events in this active region">
##INFO=<ID=MIN_ED,Number=1,Type=Integer,Description="Minimum distance between events in this active region">
##INFO=<ID=NLOD,Number=1,Type=String,Description="Normal LOD score">
##INFO=<ID=PON,Number=1,Type=String,Description="Count from Panel of Normals">
##INFO=<ID=RPA,Number=.,Type=Integer,Description="Number of times tandem repeat unit is repeated, for each allele (including reference)">
##INFO=<ID=RU,Number=1,Type=String,Description="Tandem repeat unit (bases)">
##INFO=<ID=STR,Number=0,Type=Flag,Description="Variant is a short tandem repeat">
##INFO=<ID=TLOD,Number=1,Type=String,Description="Tumor LOD score">
##SAMPLE=<ID=NORMAL,SampleName=553N,File=/data/553N.recal_reheader.bam>
##SAMPLE=<ID=TUMOR,SampleName=553T,File=/data/553T.recal_reheader.bam>
##contig=<ID=chrM,length=16571,assembly=hg19>
##contig=<ID=chr1,length=249250621,assembly=hg19>
##contig=<ID=chr2,length=243199373,assembly=hg19>
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##contig=<ID=chr1_gl000191_random,length=106433,assembly=hg19>
##contig=<ID=chr1_gl000192_random,length=547496,assembly=hg19>
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##contig=<ID=chrUn_gl000240,length=41933,assembly=hg19>
##contig=<ID=chrUn_gl000241,length=42152,assembly=hg19>
##contig=<ID=chrUn_gl000242,length=43523,assembly=hg19>
##contig=<ID=chrUn_gl000243,length=43341,assembly=hg19>
##contig=<ID=chrUn_gl000244,length=39929,assembly=hg19>
##contig=<ID=chrUn_gl000245,length=36651,assembly=hg19>
##contig=<ID=chrUn_gl000246,length=38154,assembly=hg19>
##contig=<ID=chrUn_gl000247,length=36422,assembly=hg19>
##contig=<ID=chrUn_gl000248,length=39786,assembly=hg19>
##contig=<ID=chrUn_gl000249,length=38502,assembly=hg19>
##reference=file:///data/ucsc.hg19.fasta
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR NORMAL
chrM 1420 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.52;TLOD=46.03 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,16:0.917:6:10:0.375:42,631:1:0 0/0:19,0:0.00:0:0:.:751,0:10:9
chr1 137825 rs147252685 G A . alt_allele_in_normal;germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.34;TLOD=5.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.500:2:1:0.667:71,115:1:1 0/0:25,1:0.048:1:0:1.00:881,35:2:23
chr1 1425128 rs145783063 T C . alt_allele_in_normal;germline_risk DB;ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=3.59;TLOD=16.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:66,7:0.118:4:3:0.571:2633,273:33:33 0/0:55,3:0.048:0:3:0.00:2092,124:18:37
chr1 1550985 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.08;TLOD=5.49 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:36,2:0.069:1:1:0.500:1336,77:23:13 0/0:34,0:0.00:0:0:.:1203,0:21:13
chr1 1588717 rs61774959 G A . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=20;MIN_ED=20;NLOD=4.05;TLOD=6.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:28,3:0.107:1:2:0.333:1102,109:9:19 0/0:33,2:0.071:1:1:0.500:1302,69:14:19
chr1 1588737 rs61776760 C T . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=20;MIN_ED=20;NLOD=4.94;TLOD=4.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:31,2:0.074:0:2:1.00:1238,71:12:19 0/0:37,2:0.065:1:1:0.500:1426,70:15:22
chr1 1636044 rs1059822 G A . alt_allele_in_normal DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=21.25;TLOD=7.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:222,9:0.029:5:4:0.556:8207,352:107:115 0/0:188,14:0.057:7:7:0.500:6714,518:100:88
chr1 1684347 . CCCT C . str_contraction;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=24.21;RPA=9,8;RU=CCT;STR;TLOD=6.06 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:72,5:0.100:2:3:.:1430,201:14:22 0/0:104,0:0.00:0:0:.:1819,0:23:26
chr1 1891339 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=15.65;TLOD=4.19 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:78,3:0.035:1:2:0.667:3148,107:45:33 0/0:68,0:0.00:0:0:.:2708,0:31:37
chr1 3189806 . C A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,76:0:0 0/0:5,0:0.00:0:0:.:202,0:0:5
chr1 3670946 rs74438944 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=23.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,6:0.667:4:2:0.333:110,230:3:0 0/0:6,0:0.00:0:0:.:201,0:5:1
chr1 4688916 rs117891489 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,77:0:0 0/0:5,0:0.00:0:0:.:183,0:4:1
chr1 10394508 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.78;TLOD=49.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,15:0.464:8:7:0.467:664,628:12:4 0/0:30,0:0.00:0:0:.:1175,0:19:11
chr1 10407867 rs374156057 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=14.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,5:0.400:4:1:0.800:372,193:3:6 0/0:14,0:0.00:0:0:.:542,0:11:3
chr1 11591059 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=23.18;TLOD=76.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:55,31:0.359:13:18:0.419:2246,1121:26:29 0/0:98,0:0.00:0:0:.:4021,0:56:42
chr1 12008096 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.34;TLOD=23.03 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:44,11:0.200:5:6:0.545:1818,365:20:24 0/0:47,0:0.00:0:0:.:1907,0:24:23
chr1 12854052 rs78573959 C T . t_lod_fstar DB;ECNT=1;HCNT=10;MAX_ED=.;MIN_ED=.;NLOD=11.44;TLOD=4.06 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,3:0.059:3:0:0.00:1577,118:18:22 0/0:50,0:0.00:0:0:.:1896,0:25:25
chr1 12855644 rs5003729 A G . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=2;HCNT=4;MAX_ED=4;MIN_ED=4;NLOD=12.07;TLOD=5.53 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:53,3:0.049:2:1:0.333:0|1:12855644_A_G:2130,110:35:18 0/0:83,3:0.028:3:0:0.00:0|1:12855644_A_G:3255,120:40:43
chr1 12855648 rs200816125 A T . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=4;MAX_ED=4;MIN_ED=4;NLOD=12.07;TLOD=7.96 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:53,4:0.071:3:1:0.250:0|1:12855644_A_G:2057,153:35:18 0/0:85,3:0.028:3:0:0.00:0|1:12855644_A_G:3080,120:42:43
chr1 12855884 rs78124722 C T . alt_allele_in_normal;germline_risk;t_lod_fstar DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=1.96;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:87,6:0.062:4:2:0.333:3570,206:43:44 0/0:122,11:0.081:3:8:0.727:4964,380:52:70
chr1 12919576 . C T . t_lod_fstar ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=15.35;TLOD=5.11 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:47,4:0.050:0:4:1.00:1775,149:14:33 0/0:67,0:0.00:0:0:.:2488,0:25:42
chr1 12921277 rs3204826 A G . alt_allele_in_normal DB;ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=13.29;TLOD=6.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:87,4:0.042:3:1:0.250:3251,142:46:41 0/0:80,3:0.028:0:3:1.00:2906,112:33:47
chr1 12942146 . T G . clustered_events;homologous_mapping_event ECNT=3;HCNT=4;MAX_ED=33;MIN_ED=27;NLOD=13.54;TLOD=7.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,3:0.250:2:1:0.667:330,127:5:4 0/0:53,0:0.00:0:0:.:1968,0:28:25
chr1 12942173 rs201789683 C G . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=6;MAX_ED=33;MIN_ED=27;NLOD=21.07;TLOD=17.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:14,5:0.250:2:3:0.600:0|1:12942173_C_G:581,204:8:6 0/0:81,2:0.013:1:1:0.500:0|1:12942173_C_G:3196,82:43:38
chr1 12942179 rs200929518 T C . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=6;MAX_ED=33;MIN_ED=27;NLOD=17.17;TLOD=23.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:17,7:0.304:2:5:0.286:0|1:12942173_C_G:636,272:9:8 0/0:89,2:0.013:1:1:0.500:0|1:12942173_C_G:3221,80:47:42
chr1 12942306 rs2994080 C T . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=21;MAX_ED=78;MIN_ED=78;NLOD=22.23;TLOD=10.79 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:46,10:0.150:6:4:0.400:1900,402:15:31 0/0:112,2:0.00:1:1:0.500:4425,77:55:57
chr1 12942384 rs28580205 T C . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=26;MAX_ED=78;MIN_ED=78;NLOD=8.57;TLOD=8.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:26,4:0.133:2:2:0.500:1029,164:11:15 0/0:48,2:0.020:1:1:0.500:1885,77:21:27
chr1 13183833 rs115597766 C T . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.75;TLOD=5.73 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:107,6:0.044:6:0:0.00:3956,232:54:53 0/0:108,10:0.091:7:3:0.300:3921,364:62:46
chr1 15850792 rs142513755 GC G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.902;RPA=5,4;RU=C;STR;TLOD=7.94 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.600:0:4:.:124,150:1:2 0/0:3,0:0.00:0:0:.:123,0:1:2
chr1 16862296 rs1759227 G C . alt_allele_in_normal DB;ECNT=1;HCNT=20;MAX_ED=.;MIN_ED=.;NLOD=3.36;TLOD=40.87 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:93,16:0.130:6:10:0.375:3176,623:50:43 0/0:105,8:0.057:5:3:0.625:3442,307:48:57
chr1 16862727 . A C . alt_allele_in_normal;germline_risk;t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.28;TLOD=5.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:46,5:0.083:1:4:0.800:1830,178:23:23 0/0:70,6:0.069:5:1:0.167:2679,202:35:35
chr1 16863286 rs146804457 T C . alt_allele_in_normal;germline_risk;t_lod_fstar DB;ECNT=1;HCNT=17;MAX_ED=.;MIN_ED=.;NLOD=4.72;TLOD=6.22 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:126,7:0.047:2:5:0.286:4578,258:60:66 0/0:124,8:0.057:4:4:0.500:4313,292:77:47
chr1 16890331 rs3863777 C G . alt_allele_in_normal DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=6.09;TLOD=12.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:46,6:0.102:2:4:0.667:1734,210:26:20 0/0:51,3:0.043:0:3:1.00:1950,102:34:17
chr1 16890921 rs1759171 G A . alt_allele_in_normal;germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.77;TLOD=6.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,2:0.182:0:2:0.00:445,80:4:7 0/0:19,1:0.056:1:0:1.00:754,32:10:9
chr1 16891152 rs368016229 A G . PASS DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=15.95;TLOD=7.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,3:0.115:0:3:1.00:896,124:13:10 0/0:60,1:0.00:1:0:0.00:2267,33:31:29
chr1 16892065 . G A . alt_allele_in_normal ECNT=1;HCNT=7;MAX_ED=.;MIN_ED=.;NLOD=34.29;TLOD=10.36 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:162,12:0.051:10:2:0.833:6393,456:71:91 0/0:251,13:0.037:1:12:0.077:9785,515:116:135
chr1 16892256 rs200425003 T A . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=15;MAX_ED=.;MIN_ED=.;NLOD=56.93;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:183,6:0.012:4:2:0.667:7169,241:78:105 0/0:306,13:0.019:4:9:0.308:11492,500:161:145
chr1 16893042 . T A . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=27.72;TLOD=4.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:91,3:0.026:2:1:0.667:3420,112:43:48 0/0:128,3:8.929e-03:3:0:1.00:4654,107:69:59
chr1 16893407 . T C . alt_allele_in_normal;clustered_events;germline_risk;t_lod_fstar ECNT=2;HCNT=4;MAX_ED=71;MIN_ED=71;NLOD=0.617;TLOD=5.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,2:0.154:2:0:1.00:417,74:5:6 0/0:16,1:0.059:1:0:1.00:590,41:8:8
chr1 16893478 . A G . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=2;HCNT=4;MAX_ED=71;MIN_ED=71;NLOD=15.64;TLOD=5.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:48,3:0.043:1:2:0.667:1883,120:22:26 0/0:68,2:0.015:1:1:0.500:2628,81:30:38
chr1 16893572 . G T . alt_allele_in_normal;clustered_events ECNT=2;HCNT=25;MAX_ED=129;MIN_ED=129;NLOD=41.30;TLOD=11.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:198,9:0.027:4:5:0.444:7853,332:104:94 0/0:247,12:0.030:4:8:0.333:9684,420:134:113
chr1 16893701 rs3927566 G A . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=22;MAX_ED=129;MIN_ED=129;NLOD=53.51;TLOD=48.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:592,35:0.043:24:11:0.686:21855,1305:291:301 0/0:709,56:0.052:31:25:0.554:25384,2006:339:370
chr1 16893841 rs77284342 C T . alt_allele_in_normal DB;ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=68.24;TLOD=21.49 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:476,20:0.024:12:8:0.400:18873,770:247:229 0/0:575,31:0.038:19:12:0.387:22431,1161:284:291
chr1 16903781 . C T . alt_allele_in_normal;clustered_events ECNT=2;HCNT=5;MAX_ED=5;MIN_ED=5;NLOD=19.93;TLOD=10.98 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:104,6:0.047:3:3:0.500:0|1:16903781_C_T:4141,239:49:55 0/0:157,8:0.038:3:5:0.625:0|1:16903781_C_T:6236,302:83:74
chr1 16903786 rs141003214 T C . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=5;MAX_ED=5;MIN_ED=5;NLOD=15.73;TLOD=10.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:108,6:0.046:3:3:0.500:0|1:16903781_C_T:4256,231:51:57 0/0:160,10:0.052:3:7:0.300:0|1:16903781_C_T:6066,359:84:76
chr1 16907855 rs77685848 G A . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=27;MAX_ED=.;MIN_ED=.;NLOD=18.81;TLOD=4.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:216,8:0.022:1:7:0.125:8587,297:109:107 0/0:243,27:0.078:12:15:0.444:9620,951:115:128
chr1 16908181 . C T . alt_allele_in_normal ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=12.82;TLOD=12.94 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,5:0.125:3:2:0.400:1369,191:17:18 0/0:75,3:0.027:1:2:0.667:2968,110:33:42
chr1 16914071 rs375281954 G A . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.92;TLOD=5.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:38,3:0.083:1:2:0.333:1350,118:15:23 0/0:69,3:0.029:1:2:0.333:2291,109:36:33
chr1 16914203 . C T . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=11;MAX_ED=.;MIN_ED=.;NLOD=32.87;TLOD=6.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:151,7:0.033:6:1:0.143:5606,281:76:75 0/0:261,12:0.035:5:7:0.583:9389,462:132:129
chr1 16914486 . C T . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=5.97;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,2:0.118:2:0:0.00:622,77:11:5 0/0:25,1:0.038:1:0:0.00:981,37:15:10
chr1 16916516 rs375118507 C T . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=2;HCNT=11;MAX_ED=12;MIN_ED=12;NLOD=8.60;TLOD=6.24 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:109,6:0.044:3:3:0.500:4346,216:57:52 0/0:139,9:0.050:4:5:0.556:5509,311:82:57
chr1 16916528 rs202064781 G T . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=21;MAX_ED=12;MIN_ED=12;NLOD=10.57;TLOD=6.44 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:89,6:0.050:4:2:0.667:3589,217:48:41 0/0:136,9:0.053:5:4:0.556:5349,315:79:57
chr1 16918717 . C T . clustered_events ECNT=2;HCNT=4;MAX_ED=17;MIN_ED=17;NLOD=4.21;TLOD=9.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,4:0.188:3:1:0.250:594,156:4:11 0/0:20,0:0.00:0:0:.:719,0:12:8
chr1 16918734 rs3928093 G C . clustered_events;t_lod_fstar DB;ECNT=2;HCNT=4;MAX_ED=17;MIN_ED=17;NLOD=4.82;TLOD=6.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,3:0.111:2:1:0.667:778,124:6:14 0/0:21,0:0.00:0:0:.:843,0:11:10
chr1 16952410 . C A . PASS ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=16.25;TLOD=12.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:95,10:0.070:6:4:0.400:3859,341:54:41 0/0:74,0:0.00:0:0:.:2946,0:31:43
chr1 16955283 rs12024782 C G . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.55;TLOD=5.64 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:18,4:0.125:4:0:0.00:735,153:9:9 0/0:29,1:0.045:0:1:1.00:1113,36:15:14
chr1 16973155 rs371280231 C G . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=10;MAX_ED=4;MIN_ED=4;NLOD=33.22;TLOD=6.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:191,5:0.018:3:2:0.400:0|1:16973155_C_G:7536,172:81:110 0/0:192,12:0.052:7:5:0.417:0|1:16973155_C_G:7457,398:96:96
chr1 16973159 rs374474199 A T . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=10;MAX_ED=4;MIN_ED=4;NLOD=24.92;TLOD=9.46 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:187,7:0.024:3:4:0.571:0|1:16973155_C_G:6896,265:80:107 0/0:193,15:0.063:7:8:0.533:0|1:16973155_C_G:6799,569:94:99
chr1 16973198 rs368927391 G A . alt_allele_in_normal DB;ECNT=1;HCNT=10;MAX_ED=.;MIN_ED=.;NLOD=15.04;TLOD=15.03 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:187,10:0.045:6:4:0.600:7531,378:91:96 0/0:230,36:0.110:14:22:0.389:9033,1314:108:122
chr1 16974458 rs57783259 G C . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=2;HCNT=3;MAX_ED=4;MIN_ED=4;NLOD=50.49;TLOD=6.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:289,13:0.030:7:6:0.538:11408,353:146:143 0/0:257,13:0.035:7:6:0.538:10077,432:128:129
chr1 16974462 rs56653359 C G . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=6;MAX_ED=4;MIN_ED=4;NLOD=57.03;TLOD=12.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:281,10:0.035:7:3:0.300:10169,313:141:140 0/0:255,6:0.014:3:3:0.500:9131,209:129:126
chr1 16975030 . G A . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=78.03;TLOD=5.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:476,14:0.013:6:8:0.429:17243,534:251:225 0/0:476,20:0.027:11:9:0.550:16839,729:235:241
chr1 16976223 rs200172368 C T . alt_allele_in_normal DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=15.53;TLOD=9.24 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:105,8:0.065:7:1:0.125:4270,291:47:58 0/0:127,17:0.108:11:6:0.353:5097,571:55:72
chr1 17008420 rs150930109 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=6.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,2:0.400:2:0:1.00:122,77:2:1 0/0:8,0:0.00:0:0:.:309,0:6:2
chr1 17038476 rs9728041 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=15.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,5:0.667:4:1:0.800:55,189:0:2 0/0:5,0:0.00:0:0:.:172,0:1:4
chr1 17083561 . C T . clustered_events;homologous_mapping_event;t_lod_fstar ECNT=3;HCNT=32;MAX_ED=36;MIN_ED=16;NLOD=5.12;TLOD=5.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,2:0.286:1:1:0.500:196,73:2:3 0/0:17,0:0.00:0:0:.:656,0:9:8
chr1 17083577 rs2610655 C T . clustered_events;homologous_mapping_event DB;ECNT=3;HCNT=26;MAX_ED=36;MIN_ED=16;NLOD=6.02;TLOD=7.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,3:0.188:1:2:0.667:516,103:4:9 0/0:20,0:0.00:0:0:.:795,0:9:11
chr1 17083597 rs186155999 G A . clustered_events;multi_event_alt_allele_in_normal DB;ECNT=3;HCNT=33;MAX_ED=36;MIN_ED=16;NLOD=6.15;TLOD=7.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,3:0.136:1:2:0.333:658,119:7:12 0/0:35,1:0.029:0:1:0.00:1152,36:16:19
chr1 17085485 rs3863809 G A . alt_allele_in_normal DB;ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=37.53;TLOD=11.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:378,16:0.030:10:6:0.625:15059,641:184:194 0/0:477,52:0.096:22:30:0.423:18587,2024:229:248
chr1 17086003 . G A . alt_allele_in_normal;germline_risk;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.30;TLOD=4.27 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:29,3:0.097:1:2:0.333:1164,106:10:19 0/0:26,2:0.077:0:2:0.00:1021,50:16:10
chr1 17185500 rs202014433 C T . alt_allele_in_normal;germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.641;TLOD=9.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,4:0.167:4:0:0.00:771,157:11:9 0/0:24,1:0.059:0:1:1.00:957,40:10:14
chr1 17198120 rs377264648 C G . t_lod_fstar DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=6.53;TLOD=6.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,2:0.182:1:1:0.500:342,81:6:3 0/0:25,1:0.038:0:1:1.00:992,8:9:16
chr1 17198462 rs201608158 A T . clustered_events;multi_event_alt_allele_in_normal DB;ECNT=2;HCNT=8;MAX_ED=7;MIN_ED=7;NLOD=4.83;TLOD=12.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:33,4:0.111:3:1:0.250:0|1:17198462_A_T:1177,140:20:13 0/0:43,1:0.025:1:0:0.00:0|1:17198462_A_T:1460,37:23:20
chr1 17198469 rs200175847 A C . clustered_events;multi_event_alt_allele_in_normal DB;ECNT=2;HCNT=8;MAX_ED=7;MIN_ED=7;NLOD=4.53;TLOD=12.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:30,4:0.114:3:1:0.250:0|1:17198462_A_T:1168,149:20:10 0/0:41,1:0.026:1:0:0.00:0|1:17198462_A_T:1587,32:21:20
chr1 17271851 . C G . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.35;TLOD=5.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:69,3:0.031:2:1:0.333:2707,126:25:44 0/0:50,2:0.022:0:2:1.00:2021,84:28:22
chr1 17395384 . C G . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=15.16 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.571:2:2:0.500:123,157:1:2 0/0:7,0:0.00:0:0:.:258,0:2:5
chr1 18010198 rs76970608 G A . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,75:0:0 0/0:5,0:0.00:0:0:.:145,0:2:3
chr1 19321951 rs376054008 ACCT A . germline_risk;str_contraction DB;ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=1.81;RPA=6,5;RU=CCT;STR;TLOD=10.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,6:0.429:2:4:.:149,196:1:4 0/0:6,0:0.00:0:0:.:202,0:3:3
chr1 19421856 rs2274006 A G . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=6.82 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.333:1:1:0.500:154,76:1:3 0/0:7,0:0.00:0:0:.:275,0:5:2
chr1 20250213 . T C . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=5.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,3:0.105:2:1:0.667:745,119:8:11 0/0:18,0:0.00:0:0:.:703,0:9:9
chr1 20471033 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.10;TLOD=4.70 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:38,3:0.057:2:1:0.667:1511,111:20:18 0/0:54,0:0.00:0:0:.:2075,0:27:27
chr1 22149902 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=23.78;TLOD=4.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:125,4:0.023:4:0:0.00:5040,150:58:67 0/0:109,0:0.00:0:0:.:4318,0:66:43
chr1 22541336 rs10917174 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=12.63 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,5:1.00:1:4:0.200:0,191:0:0 0/0:5,0:0.00:0:0:.:181,0:5:0
chr1 24078476 . A G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=30.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,10:0.533:7:3:0.300:294,385:5:3 0/0:29,0:0.00:0:0:.:1075,0:13:16
chr1 24400706 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.95;TLOD=5.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:60,4:0.038:4:0:0.00:2188,166:30:30 0/0:66,0:0.00:0:0:.:2292,0:33:33
chr1 26146514 rs1127818 G C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=29.37 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,7:0.875:5:2:0.714:42,275:1:0 0/0:4,0:0.00:0:0:.:152,0:2:2
chr1 26349340 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=28.29;TLOD=4.49 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:105,4:0.025:2:2:0.500:4237,152:60:45 0/0:114,0:0.00:0:0:.:4482,0:66:48
chr1 26608811 . TCCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA T . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.16;TLOD=4.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:71,3:0.028:3:0:.:2375,66:36:35 0/0:55,3:0.036:0:3:.:1810,82:29:26
chr1 26881237 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.21;TLOD=4.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:58,3:0.038:3:0:0.00:2333,110:32:26 0/0:64,0:0.00:0:0:.:2476,0:28:36
chr1 31188805 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.47;TLOD=4.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:77,4:0.030:2:2:0.500:3070,141:34:43 0/0:77,0:0.00:0:0:.:3029,0:33:44
chr1 31191257 rs150409797 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.333:0,71:0:0 0/0:4,0:0.00:0:0:.:162,0:1:3
chr1 33583465 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.85;TLOD=4.73 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:56,4:0.041:0:4:1.00:2272,149:25:31 0/0:51,0:0.00:0:0:.:2049,0:23:28
chr1 34003009 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=24.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:17,9:0.368:7:2:0.222:636,343:8:9 0/0:15,0:0.00:0:0:.:559,0:4:11
chr1 40968317 rs188817806 T C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,74:0:0 0/0:4,0:0.00:0:0:.:154,0:0:4
chr1 41523485 . G T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,77:0:0 0/0:4,0:0.00:0:0:.:163,0:1:3
chr1 43132393 rs35844708 G GA . alt_allele_in_normal;germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.501;RPA=2,3;RU=A;STR;TLOD=20.11 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,8:0.538:5:3:.:231,325:3:3 0/0:12,1:0.100:0:1:.:479,39:9:3
chr1 44064576 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.63;TLOD=38.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,14:0.393:9:5:0.643:794,528:7:13 0/0:37,0:0.00:0:0:.:1422,0:20:17
chr1 44360060 . C A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.54;TLOD=10.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,4:0.108:3:1:0.250:1591,146:20:20 0/0:42,0:0.00:0:0:.:1687,0:26:16
chr1 44445008 . CGCG C . germline_risk;str_contraction;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.80;RPA=9,8;RU=GCG;STR;TLOD=4.21 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,2:0.250:2:0:.:317,75:4:5 0/0:7,0:0.00:0:0:.:267,0:4:3
chr1 44898830 rs4347247 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,77:0:0 0/0:5,0:0.00:0:0:.:209,0:3:2
chr1 45294299 . C T . t_lod_fstar ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=11.74;TLOD=5.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:30,2:0.083:1:1:0.500:1117,79:12:18 0/0:49,0:0.00:0:0:.:1750,0:25:24
chr1 45296752 rs2295998 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=20.51 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,6:0.833:5:1:0.167:36,232:0:1 0/0:4,0:0.00:0:0:.:139,0:0:4
chr1 47402192 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=13.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.571:3:1:0.250:115,141:2:1 0/0:9,0:0.00:0:0:.:348,0:3:6
chr1 50022562 rs117958825 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=8.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,79:0:0 0/0:4,0:0.00:0:0:.:147,0:4:0
chr1 52962730 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=9.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,5:0.250:4:1:0.800:405,167:6:4 0/0:27,0:0.00:0:0:.:1073,0:13:14
chr1 55337163 rs150166147 G A . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=25.54;TLOD=4.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:110,4:0.023:2:2:0.500:4142,153:49:61 0/0:100,0:0.00:0:0:.:3614,0:53:47
chr1 57476485 . CT C . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.33;RPA=10,9;RU=T;STR;TLOD=4.30 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,6:0.455:6:0:.:243,249:4:2 0/0:16,0:0.00:0:0:.:640,0:6:10
chr1 57756693 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=15.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,6:0.250:2:4:0.667:816,222:10:10 0/0:13,0:0.00:0:0:.:523,0:4:9
chr1 59359528 rs368467853 GCA G . germline_risk;str_contraction;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.01;RPA=7,6;RU=CA;STR;TLOD=4.99 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,2:0.286:2:0:.:197,76:3:2 0/0:10,0:0.00:0:0:.:399,0:6:4
chr1 67266606 . A T . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=7.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.667:1:2:0.667:39,112:1:0 0/0:6,0:0.00:0:0:.:220,0:1:5
chr1 67452289 . C A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=5.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:12,2:0.167:1:1:0.500:492,69:5:7 0/0:16,0:0.00:0:0:.:611,0:8:8
chr1 70489151 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.03;TLOD=56.44 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:17,20:0.517:10:10:0.500:665,775:7:10 0/0:37,0:0.00:0:0:.:1481,0:20:17
chr1 77684963 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.55;TLOD=77.04 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:46,32:0.375:16:16:0.500:1849,1310:24:22 0/0:60,0:0.00:0:0:.:2390,0:33:27
chr1 78557486 rs485005 A G . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=28;MIN_ED=28;NLOD=0.903;TLOD=7.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:2:1:0.333:113,125:3:0 0/0:4,0:0.00:0:0:.:152,0:1:3
chr1 78557514 rs631045 G A . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=28;MIN_ED=28;NLOD=0.602;TLOD=7.54 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.400:2:1:0.667:101,123:2:1 0/0:3,0:0.00:0:0:.:121,0:0:3
chr1 81969063 . CCAG C . str_contraction;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.63;RPA=5,4;RU=CAG;STR;TLOD=5.21 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:79,4:0.034:2:2:.:3200,157:39:40 0/0:62,1:0.00:1:0:.:2436,41:29:33
chr1 84543803 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.96;TLOD=5.70 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,3:0.059:0:3:1.00:1382,122:20:17 0/0:53,0:0.00:0:0:.:1943,0:22:30
chr1 85137091 . A C . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=12.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,4:0.364:4:0:0.00:321,142:3:5 0/0:22,0:0.00:0:0:.:875,0:12:10
chr1 86355212 rs76666601 C A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=7.16 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,3:0.286:1:2:0.667:232,120:5:1 0/0:7,0:0.00:0:0:.:277,0:3:4
chr1 94639685 . T C . PASS ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=18.96;TLOD=70.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:46,23:0.345:8:15:0.348:1724,918:14:32 0/0:77,0:0.00:0:0:.:2747,0:46:31
chr1 97771947 rs7556439 C A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=32.36 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,9:0.800:3:6:0.667:85,347:2:0 0/0:7,0:0.00:0:0:.:254,0:3:4
chr1 99766253 rs819915 C G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=15.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,4:0.444:2:2:0.500:198,162:4:1 0/0:4,0:0.00:0:0:.:158,0:1:3
chr1 101199979 rs3176875 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=7.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:1:1:0.500:73,80:1:1 0/0:5,0:0.00:0:0:.:172,0:2:3
chr1 104160423 . C A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=6.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,3:0.200:2:1:0.333:443,119:8:3 0/0:13,0:0.00:0:0:.:515,0:5:8
chr1 106331128 . G T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.07 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,75:0:0 0/0:6,0:0.00:0:0:.:234,0:0:6
chr1 110207665 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=22.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,6:0.375:1:5:0.833:582,245:5:9 0/0:31,0:0.00:0:0:.:1207,0:14:17
chr1 112185637 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,78:0:0 0/0:4,0:0.00:0:0:.:157,0:2:2
chr1 114429461 rs2358994 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=20.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,5:1.00:2:3:0.400:0,182:0:0 0/0:5,0:0.00:0:0:.:205,0:3:2
chr1 114505087 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.51;TLOD=27.47 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,7:0.778:5:2:0.286:110,262:2:1 0/0:18,0:0.00:0:0:.:731,0:8:10
chr1 114949820 rs41274116 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=11.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.600:3:0:1.00:75,120:0:2 0/0:8,0:0.00:0:0:.:285,0:2:6
chr1 115123747 rs1564824 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=7.54 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,2:0.400:1:1:0.500:121,83:2:1 0/0:5,0:0.00:0:0:.:193,0:2:3
chr1 116268283 rs4475752 C T . germline_risk DB;ECNT=1;HCNT=7;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=18.84 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,8:0.500:4:4:0.500:332,318:0:8 0/0:7,0:0.00:0:0:.:285,0:5:2
chr1 117699295 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.45;TLOD=49.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,19:0.366:11:8:0.579:1313,697:16:21 0/0:59,0:0.00:0:0:.:2118,0:24:35
chr1 119923784 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.24;TLOD=44.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,16:0.444:8:8:0.500:789,657:4:16 0/0:39,1:0.029:0:1:0.00:1580,13:14:25
chr1 120906150 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=33.41;TLOD=157.46 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:70,53:0.442:29:24:0.547:2862,2179:33:37 0/0:143,0:0.00:0:0:.:5732,0:74:69
chr1 121484688 rs2128558 T A . PASS DB;ECNT=1;HCNT=14;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=16.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:22,6:0.208:3:3:0.500:801,243:10:12 0/0:24,0:0.00:0:0:.:835,0:13:11
chr1 121484938 rs1817497 G A . clustered_events;homologous_mapping_event;t_lod_fstar DB;ECNT=4;HCNT=9;MAX_ED=151;MIN_ED=36;NLOD=6.88;TLOD=6.03 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:24,3:0.087:0:3:0.00:0|1:121484938_G_A:888,114:10:14 0/0:24,0:0.00:0:0:.:0|1:121484938_G_A:845,0:13:11
chr1 121484974 . T G . clustered_events;homologous_mapping_event ECNT=4;HCNT=9;MAX_ED=151;MIN_ED=36;NLOD=6.02;TLOD=6.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:17,2:0.118:0:2:0.00:0|1:121484938_G_A:677,67:6:11 0/0:18,0:0.00:0:0:.:0|1:121484938_G_A:696,0:8:10
chr1 121485026 rs1905228 G C . clustered_events;homologous_mapping_event;t_lod_fstar DB;ECNT=4;HCNT=10;MAX_ED=151;MIN_ED=36;NLOD=6.32;TLOD=5.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,2:0.111:1:1:0.500:599,84:6:9 0/0:25,0:0.00:0:0:.:1002,0:12:13
chr1 121485089 rs4092793 G T . clustered_events;multi_event_alt_allele_in_normal DB;ECNT=4;HCNT=8;MAX_ED=151;MIN_ED=36;NLOD=18.66;TLOD=9.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:55,5:0.074:3:2:0.600:2157,186:27:28 0/0:66,1:0.00:1:0:1.00:2608,36:34:32
chr1 142688831 rs146967546 C A . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=4;HCNT=2;MAX_ED=21;MIN_ED=13;NLOD=0.602;TLOD=7.85 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,81:0:0 0/0:2,0:0.00:0:0:.:81,0:2:0
chr1 142688844 rs79170245 C T . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=4;HCNT=2;MAX_ED=21;MIN_ED=13;NLOD=1.20;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0|1:142688844_C_T:0,73:0:0 0/0:4,0:0.00:0:0:.:0|1:142688844_C_T:152,0:4:0
chr1 142688845 rs75066610 A G . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=4;HCNT=2;MAX_ED=21;MIN_ED=13;NLOD=1.51;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0|1:142688844_C_T:0,85:0:0 0/0:4,0:0.00:0:0:.:0|1:142688844_C_T:145,0:4:0
chr1 142688852 rs79226784 T C . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=4;HCNT=2;MAX_ED=21;MIN_ED=13;NLOD=1.20;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0|1:142688844_C_T:0,76:0:0 0/0:4,0:0.00:0:0:.:0|1:142688844_C_T:145,0:3:1
chr1 142720798 rs9629072 G C . clustered_events;germline_risk DB;ECNT=2;HCNT=4;MAX_ED=16;MIN_ED=16;NLOD=1.51;TLOD=8.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,82:0:0 0/0:6,0:0.00:0:0:.:233,0:4:2
chr1 142720814 rs200944583 A C . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=16;MIN_ED=16;NLOD=1.44;TLOD=7.36 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,81:0:0 0/0:6,0:0.00:0:0:.:188,0:4:1
chr1 142782246 rs201433865 G T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,4:0.333:2:2:0.500:205,148:2:3 0/0:4,0:0.00:0:0:.:163,0:0:4
chr1 142796607 rs79595519 G T . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=11;MIN_ED=11;NLOD=0.903;TLOD=13.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,6:0.400:2:4:0.333:286,231:4:3 0/0:4,0:0.00:0:0:.:156,0:3:1
chr1 142796618 rs71260108 G A . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=11;MIN_ED=11;NLOD=0.602;TLOD=6.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,3:0.200:3:0:1.00:419,116:3:8 0/0:3,0:0.00:0:0:.:109,0:3:0
chr1 142799632 . A G . alt_allele_in_normal;germline_risk;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.978;TLOD=4.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:34,2:0.069:1:1:0.500:1217,80:19:15 0/0:43,3:0.088:2:1:0.333:1528,122:25:18
chr1 143188556 rs145795485 C T . alt_allele_in_normal;germline_risk;t_lod_fstar DB;ECNT=1;HCNT=9;MAX_ED=.;MIN_ED=.;NLOD=1.94;TLOD=4.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:25,2:0.095:1:1:0.500:1028,76:14:11 0/0:25,1:0.048:0:1:1.00:1016,36:15:10
chr1 143188674 rs77141208 C G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=7;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=6.22 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.333:1:1:0.500:165,82:3:1 0/0:6,0:0.00:0:0:.:223,0:2:4
chr1 143210200 . T C . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=3.94;TLOD=6.16 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:22,4:0.158:2:2:0.500:806,169:11:11 0/0:51,3:0.047:1:2:0.333:1856,124:32:19
chr1 143210303 rs200470171 T G . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.43;TLOD=4.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,2:0.133:1:1:0.500:578,83:9:7 0/0:36,1:0.036:0:1:0.00:1317,14:13:23
chr1 143391514 rs78292859 T A . alt_allele_in_normal;germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.916;TLOD=6.30 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,4:0.250:0:4:0.00:234,154:5:1 0/0:17,1:0.059:1:0:1.00:608,37:14:3
chr1 143402780 rs143483981 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=7.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.500:2:1:0.667:66,125:2:0 0/0:12,0:0.00:0:0:.:447,0:7:5
chr1 143457157 rs140668590 A C . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=19;MIN_ED=19;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0|1:143457157_A_C:0,82:0:0 0/0:4,0:0.00:0:0:.:0|1:143457157_A_C:148,0:2:2
chr1 143457176 . C T . clustered_events;germline_risk;t_lod_fstar ECNT=2;HCNT=2;MAX_ED=19;MIN_ED=19;NLOD=1.20;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0|1:143457157_A_C:0,78:0:0 0/0:5,0:0.00:0:0:.:0|1:143457157_A_C:197,0:2:3
chr1 143743446 rs201907523 C G . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=4;MAX_ED=30;MIN_ED=30;NLOD=4.98;TLOD=13.76 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:70,10:0.111:3:7:0.700:2429,350:42:28 0/0:81,5:0.051:3:2:0.400:2764,193:35:46
chr1 143743476 . G T . clustered_events;multi_event_alt_allele_in_normal ECNT=2;HCNT=4;MAX_ED=30;MIN_ED=30;NLOD=15.05;TLOD=6.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:51,4:0.063:2:2:0.500:2063,153:29:22 0/0:56,1:0.00:1:0:1.00:2254,37:26:30
chr1 144520382 rs373277403 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=5.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:1:1:0.500:71,74:1:1 0/0:9,0:0.00:0:0:.:286,0:3:6
chr1 144879676 . T G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=4.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,2:0.200:2:0:1.00:320,72:3:5 0/0:12,0:0.00:0:0:.:475,0:7:5
chr1 144916486 rs1699798 T G . clustered_events;germline_risk DB;ECNT=2;HCNT=1;MAX_ED=7;MIN_ED=7;NLOD=1.51;TLOD=6.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:7,2:0.222:1:1:0.500:0|1:144916486_T_G:245,76:5:2 0/0:5,0:0.00:0:0:.:0|1:144916486_T_G:174,0:3:2
chr1 144916493 rs1699799 A G . clustered_events;germline_risk DB;ECNT=2;HCNT=1;MAX_ED=7;MIN_ED=7;NLOD=1.51;TLOD=6.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:8,2:0.200:1:1:0.500:0|1:144916486_T_G:312,70:6:2 0/0:5,0:0.00:0:0:.:0|1:144916486_T_G:182,0:3:2
chr1 145008577 rs2596274 G A . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=1;MAX_ED=16;MIN_ED=16;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0|1:145008577_G_A:0,77:0:0 0/0:4,0:0.00:0:0:.:0|1:145008577_G_A:136,0:3:1
chr1 145008593 rs2762792 A G . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=1;MAX_ED=16;MIN_ED=16;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0|1:145008577_G_A:0,76:0:0 0/0:4,0:0.00:0:0:.:0|1:145008577_G_A:142,0:3:1
chr1 145073115 rs1663856 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=12.30 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.750:1:2:0.667:37,122:1:0 0/0:6,0:0.00:0:0:.:222,0:4:2
chr1 145090149 rs2596318 A C . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=22;MIN_ED=22;NLOD=1.20;TLOD=9.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,5:0.333:2:3:0.600:312,187:2:6 0/0:4,0:0.00:0:0:.:150,0:0:4
chr1 145090171 rs2590155 G A . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=22;MIN_ED=22;NLOD=1.20;TLOD=10.99 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,6:0.333:2:4:0.333:271,241:2:5 0/0:4,0:0.00:0:0:.:139,0:0:4
chr1 145282093 rs199946317 G A . alt_allele_in_normal DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.17;TLOD=19.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,8:0.167:5:3:0.625:1602,323:20:20 0/0:89,7:0.073:5:2:0.714:3510,274:34:55
chr1 145290553 rs4143494 C T . alt_allele_in_normal DB;ECNT=1;HCNT=16;MAX_ED=.;MIN_ED=.;NLOD=3.86;TLOD=21.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,11:0.194:7:4:0.364:1587,428:17:23 0/0:37,2:0.065:2:0:0.00:1437,51:18:19
chr1 145293479 . G A . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=63.51;TLOD=6.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:229,8:0.023:1:7:0.125:8539,273:120:109 0/0:260,4:0.00:0:4:0.00:9368,144:133:127
chr1 145354324 rs372557852 G A . alt_allele_in_normal DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.17;TLOD=18.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,7:0.700:4:3:0.571:122,280:0:3 0/0:164,2:0.00:0:2:0.00:6294,77:74:90
chr1 145355601 rs370083415 T C . clustered_events DB;ECNT=2;HCNT=6;MAX_ED=36;MIN_ED=36;NLOD=3.01;TLOD=7.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,3:0.231:1:2:0.333:621,124:8:8 0/0:11,0:0.00:0:0:.:411,0:3:8
chr1 145355637 . C G . clustered_events ECNT=2;HCNT=6;MAX_ED=36;MIN_ED=36;NLOD=3.27;TLOD=7.67 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,3:0.214:1:2:0.667:579,121:6:8 0/0:12,0:0.00:0:0:.:456,0:5:7
chr1 145588065 . T G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=5.98 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:0:2:0.00:74,63:1:1 0/0:9,0:0.00:0:0:.:314,0:2:7
chr1 146973091 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=6.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,1:0.222:0:1:1.00:322,34:6:2 0/0:11,0:0.00:0:0:.:426,0:5:6
chr1 148004834 rs79358081 G A . alt_allele_in_normal DB;ECNT=1;HCNT=48;MAX_ED=.;MIN_ED=.;NLOD=3.26;TLOD=17.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:32,6:0.167:2:4:0.333:1183,244:16:16 0/0:39,2:0.054:0:2:0.00:1451,70:12:27
chr1 148010915 rs377419024 T C . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=12;MAX_ED=27;MIN_ED=27;NLOD=56.92;TLOD=8.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:166,15:0.064:6:9:0.400:6177,606:85:81 0/0:1271,89:0.053:50:39:0.562:46244,3475:626:645
chr1 148010942 rs184356822 G A . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=14;MAX_ED=27;MIN_ED=27;NLOD=83.12;TLOD=10.06 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:200,15:0.071:6:9:0.400:8211,576:100:100 0/0:1377,93:0.049:51:42:0.548:54838,3285:700:677
chr1 148247893 rs111910934 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.667:0:3:1.00:78,115:0:2 0/0:6,0:0.00:0:0:.:222,0:0:6
chr1 148344637 . C A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=38.83;TLOD=17.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:135,12:0.058:5:7:0.583:5426,448:60:75 0/0:199,0:0.00:0:0:.:7927,0:92:107
chr1 148344885 . C T . alt_allele_in_normal;germline_risk;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.04;TLOD=4.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,2:0.133:1:1:0.500:557,81:10:4 0/0:25,2:0.087:1:1:0.500:1005,79:11:14
chr1 148853829 . G A . alt_allele_in_normal;clustered_events ECNT=3;HCNT=4;MAX_ED=6;MIN_ED=2;NLOD=7.45;TLOD=38.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:111,18:0.127:6:12:0.333:4299,693:48:63 0/0:131,11:0.058:6:5:0.545:4987,384:67:64
chr1 148853831 . C T . alt_allele_in_normal;clustered_events ECNT=3;HCNT=4;MAX_ED=6;MIN_ED=2;NLOD=11.45;TLOD=10.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:123,6:0.039:3:3:0.500:0|1:148853831_C_T:4869,217:50:73 0/0:135,9:0.047:3:6:0.667:0|1:148853831_C_T:5308,309:71:64
chr1 148853835 rs199792893 G A . alt_allele_in_normal;clustered_events DB;ECNT=3;HCNT=4;MAX_ED=6;MIN_ED=2;NLOD=11.15;TLOD=10.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:123,6:0.038:3:3:0.500:0|1:148853831_C_T:4568,232:51:72 0/0:141,9:0.048:3:6:0.333:0|1:148853831_C_T:4945,329:74:67
chr1 148853947 . C T . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=5.26;TLOD=4.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:175,6:0.021:3:3:0.500:7074,215:79:96 0/0:232,20:0.063:9:11:0.550:9267,692:122:110
chr1 148854004 . C T . alt_allele_in_normal;clustered_events ECNT=8;HCNT=1;MAX_ED=57;MIN_ED=19;NLOD=8.12;TLOD=7.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:110,5:0.032:1:4:0.800:0|1:148854004_C_T:4340,203:51:59 0/0:149,11:0.056:6:5:0.455:0|1:148854004_C_T:5908,414:80:69
chr1 148854023 . G A . alt_allele_in_normal;clustered_events ECNT=8;HCNT=1;MAX_ED=57;MIN_ED=19;NLOD=15.70;TLOD=11.04 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:89,5:0.048:1:4:0.200:0|1:148854004_C_T:3423,182:41:48 0/0:116,5:0.031:4:1:0.800:0|1:148854004_C_T:4371,164:59:57
chr1 148854027 . C T . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=8;HCNT=2;MAX_ED=57;MIN_ED=19;NLOD=28.19;TLOD=4.98 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:85,4:0.026:1:3:0.750:0|1:148854027_C_T:3335,152:38:47 0/0:113,2:0.00:0:2:1.00:0|1:148854027_C_T:4446,73:58:55
chr1 148854030 . C T . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=8;HCNT=2;MAX_ED=57;MIN_ED=19;NLOD=27.89;TLOD=5.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:82,4:0.027:1:3:0.750:0|1:148854027_C_T:3265,144:38:44 0/0:110,2:0.00:0:2:1.00:0|1:148854027_C_T:4271,77:57:53
chr1 148854033 . T C . alt_allele_in_normal;clustered_events ECNT=8;HCNT=3;MAX_ED=57;MIN_ED=19;NLOD=5.39;TLOD=18.11 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:75,8:0.086:2:6:0.250:2817,277:34:41 0/0:95,7:0.053:4:3:0.571:3376,230:45:50
chr1 148854045 . T C . alt_allele_in_normal;clustered_events ECNT=8;HCNT=1;MAX_ED=57;MIN_ED=19;NLOD=9.68;TLOD=8.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:63,3:0.048:1:2:0.333:0|1:148854004_C_T:2388,107:25:38 0/0:76,3:0.039:3:0:1.00:0|1:148854004_C_T:2737,101:36:40
chr1 148854052 . C T . alt_allele_in_normal;clustered_events;triallelic_site ECNT=8;HCNT=2;MAX_ED=57;MIN_ED=19;NLOD=11.47;TLOD=8.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:50,3:0.061:1:2:0.667:0|1:148854027_C_T:1840,93:19:31 0/0:72,2:0.029:0:2:1.00:0|1:148854027_C_T:2529,74:36:36
chr1 148854061 . C G . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=8;HCNT=1;MAX_ED=57;MIN_ED=19;NLOD=11.47;TLOD=5.44 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:45,2:0.047:1:1:0.500:0|1:148854004_C_T:1741,84:17:27 0/0:68,3:0.030:3:0:0.00:0|1:148854004_C_T:2629,118:33:35
chr1 150230422 rs141941429 GCT G . str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.07;RPA=9,8;RU=CT;STR;TLOD=4.99 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,4:0.231:3:1:.:347,138:4:6 0/0:17,0:0.00:0:0:.:549,0:8:9
chr1 150779481 . T TTCTCTCTCTCTCTCTCTC . germline_risk;t_lod_fstar ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=1.22;RPA=10,19;RU=TC;STR;TLOD=4.49 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,2:0.400:0:2:.:121,79:0:3 0/0:4,0:0.00:0:0:.:123,0:1:3
chr1 150804502 . T C . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=19.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,5:0.625:4:1:0.800:122,198:1:2 0/0:5,0:0.00:0:0:.:191,0:4:1
chr1 150973407 rs77964606 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.73 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:0:3:0.00:114,112:2:1 0/0:4,0:0.00:0:0:.:150,0:2:2
chr1 151278725 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.86;TLOD=4.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:73,3:0.034:0:3:0.00:2867,113:37:36 0/0:69,0:0.00:0:0:.:2747,0:37:32
chr1 151687998 rs141638568 GCA G . alt_allele_in_normal;str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.20;RPA=7,6;RU=CA;STR;TLOD=4.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:18,3:0.125:2:1:.:634,120:13:5 0/0:26,2:0.087:1:1:.:859,72:12:14
chr1 152128232 rs200878903 T C . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=22.78;TLOD=6.03 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:113,11:0.072:6:5:0.545:3769,250:46:67 0/0:157,17:0.098:9:8:0.529:5078,288:68:89
chr1 152277741 . T C . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=9.64;TLOD=4.16 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:94,6:0.053:1:5:0.167:3507,233:51:43 0/0:125,11:0.083:6:5:0.545:4530,451:59:66
chr1 152770835 rs375000770 T A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=8.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.600:1:2:0.333:74,105:2:0 0/0:11,0:0.00:0:0:.:373,0:7:4
chr1 154580348 . GAC G . alt_allele_in_normal;str_contraction ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=13.96;RPA=8,7;RU=AC;STR;TLOD=8.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:75,6:0.143:2:4:.:1395,218:22:17 0/0:81,2:0.059:1:1:.:1392,69:20:20
chr1 155718715 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=12.47 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,4:0.108:4:0:0.00:1498,164:19:18 0/0:39,0:0.00:0:0:.:1551,0:16:23
chr1 155733245 . C T . alt_allele_in_normal;clustered_events ECNT=2;HCNT=8;MAX_ED=12;MIN_ED=12;NLOD=7.21;TLOD=10.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:69,5:0.073:2:3:0.600:2697,201:32:37 0/0:60,3:0.038:3:0:0.00:2386,115:27:33
chr1 155733257 rs607834 T C . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=16;MAX_ED=12;MIN_ED=12;NLOD=7.60;TLOD=10.11 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:78,5:0.063:2:3:0.400:3057,194:34:44 0/0:64,3:0.038:3:0:1.00:2430,114:30:34
chr1 155920804 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.63;TLOD=17.67 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:33,8:0.200:2:6:0.750:1187,286:17:16 0/0:40,0:0.00:0:0:.:1465,0:13:27
chr1 156783923 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.75;TLOD=49.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:48,20:0.278:7:13:0.650:1945,718:24:24 0/0:59,0:0.00:0:0:.:2332,0:24:35
chr1 157558979 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=20.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,9:0.429:5:4:0.444:445,336:4:7 0/0:37,0:0.00:0:0:.:1467,0:18:19
chr1 159410148 . T C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.18;TLOD=40.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,15:0.550:8:7:0.533:381,577:6:4 0/0:25,0:0.00:0:0:.:904,0:12:13
chr1 161198118 . AGTG A . str_contraction;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.93;RPA=4,3;RU=GTG;STR;TLOD=5.70 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,2:0.059:2:0:.:1324,79:24:11 0/0:62,0:0.00:0:0:.:2171,0:40:22
chr1 162367190 . G T . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=24.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,8:0.538:3:5:0.375:257,280:3:4 0/0:13,0:0.00:0:0:.:494,0:8:5
chr1 167489025 rs2984800 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=8.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,80:0:0 0/0:4,0:0.00:0:0:.:152,0:2:2
chr1 167599310 rs3738219 T G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:4:0:1.00:0,134:0:0 0/0:4,0:0.00:0:0:.:151,0:2:2
chr1 167779688 rs147345244 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=8.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,72:0:0 0/0:5,0:0.00:0:0:.:198,0:3:2
chr1 168263893 rs2284768 C G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,78:0:0 0/0:4,0:0.00:0:0:.:158,0:2:2
chr1 169446404 rs75099879 C T . PASS DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.83;TLOD=33.26 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,12:0.429:3:9:0.750:582,468:11:5 0/0:46,0:0.00:0:0:.:1680,0:29:17
chr1 173332101 rs111898725 GTTTTGAC G . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:.:0,75:0:0 0/0:6,0:0.00:0:0:.:233,0:0:6
chr1 173879030 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=40.39 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:32,19:0.316:8:11:0.421:1312,756:15:17 0/0:44,0:0.00:0:0:.:1766,0:16:28
chr1 174274448 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=15.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,4:0.500:3:1:0.250:161,161:3:1 0/0:9,0:0.00:0:0:.:368,0:3:6
chr1 177881518 . TAGA T . germline_risk;str_contraction;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.922;RPA=7,6;RU=AGA;STR;TLOD=5.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:.:0,73:0:0 0/0:4,0:0.00:0:0:.:112,0:3:1
chr1 182368843 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.74;TLOD=42.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,16:0.300:5:11:0.688:1410,630:21:14 0/0:50,0:0.00:0:0:.:1986,0:23:27
chr1 186430209 . T C . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.88;TLOD=5.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,3:0.095:2:1:0.667:1076,117:8:19 0/0:29,0:0.00:0:0:.:1071,0:20:9
chr1 199530724 rs111594963 T TCCTC . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.608;TLOD=20.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,6:0.625:4:2:.:115,217:0:3 0/0:2,0:0.00:0:0:.:52,0:0:2
chr1 200802114 . G C . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=9.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.600:3:1:0.750:82,142:1:1 0/0:7,0:0.00:0:0:.:278,0:6:1
chr1 200952469 . AG A . germline_risk;t_lod_fstar ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=1.50;RPA=5,4;RU=G;STR;TLOD=4.96 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:1:1:.:78,74:2:0 0/0:7,0:0.00:0:0:.:239,0:6:1
chr1 201173090 . C A . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.22;TLOD=39.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,15:0.387:8:7:0.467:972,542:7:17 0/0:26,0:0.00:0:0:.:1004,0:15:11
chr1 201180045 rs12728986 A G . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=22.45;TLOD=4.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:64,4:0.049:1:3:0.750:2260,128:33:31 0/0:100,13:0.101:10:3:0.231:3155,450:56:44
chr1 201180364 rs372410920 G A . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=29.13;TLOD=5.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:139,6:0.035:3:3:0.500:5352,192:67:72 0/0:137,3:8.929e-03:2:1:0.667:5182,108:75:62
chr1 201197258 rs77034984 C G . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:36,84:0:1 0/0:5,0:0.00:0:0:.:200,0:4:1
chr1 201342258 . G A . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=16.25;TLOD=83.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:44,30:0.397:19:11:0.633:1771,1189:18:26 0/0:67,0:0.00:0:0:.:2654,0:32:35
chr1 202913204 rs3737884 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=7.67 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:3:0:0.00:124,121:1:2 0/0:8,0:0.00:0:0:.:308,0:4:4
chr1 205496906 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=19.22;TLOD=35.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:48,14:0.250:6:8:0.571:1852,548:20:28 0/0:78,0:0.00:0:0:.:3021,0:39:39
chr1 206566903 rs2987927 G A . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.94;TLOD=4.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:89,4:0.038:2:2:0.500:3153,155:48:41 0/0:114,9:0.066:1:8:0.111:3862,329:58:56
chr1 207143296 rs1890864 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=16.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.667:1:3:0.750:82,160:1:1 0/0:5,0:0.00:0:0:.:181,0:0:5
chr1 209279431 . G T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,73:0:0 0/0:4,0:0.00:0:0:.:166,0:0:4
chr1 209918090 rs7532324 G A . germline_risk DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=10.94 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,3:0.333:1:2:0.333:241,120:2:5 0/0:4,0:0.00:0:0:.:137,0:4:0
chr1 212619009 rs2282435 C A . germline_risk DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=6.68 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.400:0:2:1.00:154,72:0:4 0/0:2,0:0.00:0:0:.:74,0:2:0
chr1 215399899 rs10864165 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,84:0:0 0/0:3,0:0.00:0:0:.:109,0:1:2
chr1 219347180 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=24.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,10:0.368:8:2:0.800:480,353:7:6 0/0:31,0:0.00:0:0:.:1218,0:17:14
chr1 220195728 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.08;TLOD=5.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,3:0.065:2:1:0.333:1500,112:20:17 0/0:36,0:0.00:0:0:.:1385,0:19:17
chr1 220990561 rs10863567 C A . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.667:3:0:0.00:79,112:0:2 0/0:4,0:0.00:0:0:.:163,0:1:3
chr1 221436633 rs6686637 T G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=11.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.750:2:1:0.667:38,126:0:1 0/0:4,0:0.00:0:0:.:143,0:3:1
chr1 222647231 . A G . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.11 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,2:0.286:2:0:0.00:264,70:2:5 0/0:4,0:0.00:0:0:.:140,0:2:2
chr1 226259113 . C G . alt_allele_in_normal;germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.12;TLOD=4.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,3:0.200:2:1:0.333:368,126:4:5 0/0:29,1:0.045:1:0:0.00:1049,41:6:23
chr1 226605024 rs1341334 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,79:0:0 0/0:4,0:0.00:0:0:.:154,0:1:3
chr1 229602632 . G C . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=7.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,2:0.250:2:0:1.00:239,84:2:4 0/0:7,0:0.00:0:0:.:282,0:3:4
chr1 235594250 rs2291688 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=7.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,2:0.286:0:2:1.00:201,82:4:2 0/0:5,0:0.00:0:0:.:180,0:4:1
chr1 236748630 rs1006455 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=6.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:2:0:0.00:58,68:2:0 0/0:9,0:0.00:0:0:.:371,0:5:4
chr1 241846828 rs146648760 CTG C . alt_allele_in_normal;germline_risk;str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.29;RPA=7,6;RU=TG;STR;TLOD=4.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:26,2:0.091:1:1:.:1050,82:16:10 0/0:22,1:0.063:0:1:.:834,41:7:15
chr1 242162525 rs3795639 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.667:1:2:0.333:41,113:1:0 0/0:4,0:0.00:0:0:.:157,0:4:0
chr1 246670422 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=19.26;TLOD=81.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:69,36:0.342:11:25:0.306:2623,1363:34:35 0/0:86,0:0.00:0:0:.:3137,0:39:47
chr1 247094434 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.63;TLOD=91.53 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:61,30:0.377:12:18:0.400:2339,1129:34:27 0/0:89,0:0.00:0:0:.:3503,0:43:46
chr1 247694688 rs78512685 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=13.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:3:1:0.250:0,168:0:0 0/0:3,0:0.00:0:0:.:108,0:2:1
chr1 248060037 rs12564001 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=16.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,7:0.556:7:0:1.00:201,268:3:2 0/0:4,0:0.00:0:0:.:142,0:3:1
chr1 248084449 . A T . clustered_events;homologous_mapping_event;t_lod_fstar ECNT=9;HCNT=2;MAX_ED=30;MIN_ED=3;NLOD=13.24;TLOD=5.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:33,2:0.065:2:0:0.00:0|1:248084449_A_T:1161,80:19:14 0/0:55,0:0.00:0:0:.:0|1:248084449_A_T:1932,0:20:35
chr1 248084452 . C T . clustered_events;homologous_mapping_event;t_lod_fstar ECNT=9;HCNT=2;MAX_ED=30;MIN_ED=3;NLOD=13.24;TLOD=5.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:34,2:0.067:2:0:0.00:0|1:248084449_A_T:1243,78:19:15 0/0:55,0:0.00:0:0:.:0|1:248084449_A_T:2166,0:20:35
chr1 248084453 . TCC T . clustered_events;homologous_mapping_event;t_lod_fstar ECNT=9;HCNT=2;MAX_ED=30;MIN_ED=3;NLOD=13.55;TLOD=5.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:34,2:0.067:2:0:.:0|1:248084449_A_T:1323,81:19:15 0/0:54,0:0.00:0:0:.:0|1:248084449_A_T:2041,0:20:34
chr1 248084455 . C CTAA . clustered_events;homologous_mapping_event;t_lod_fstar ECNT=9;HCNT=2;MAX_ED=30;MIN_ED=3;NLOD=13.24;TLOD=5.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:34,2:0.067:2:0:.:0|1:248084449_A_T:1201,67:19:15 0/0:54,0:0.00:0:0:.:0|1:248084449_A_T:2065,0:20:34
chr1 248084459 . TTC T . clustered_events;homologous_mapping_event;t_lod_fstar ECNT=9;HCNT=2;MAX_ED=30;MIN_ED=3;NLOD=12.04;TLOD=5.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:32,2:0.067:2:0:.:0|1:248084449_A_T:1144,72:19:13 0/0:50,0:0.00:0:0:.:0|1:248084449_A_T:1883,0:19:31
chr1 248084466 . G C . clustered_events;homologous_mapping_event;t_lod_fstar ECNT=9;HCNT=2;MAX_ED=30;MIN_ED=3;NLOD=11.74;TLOD=5.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:30,2:0.074:2:0:1.00:0|1:248084449_A_T:1129,71:18:12 0/0:47,0:0.00:0:0:.:0|1:248084449_A_T:1806,0:18:29
chr1 248084474 . G GA . clustered_events;homologous_mapping_event;t_lod_fstar ECNT=9;HCNT=2;MAX_ED=30;MIN_ED=3;NLOD=11.74;TLOD=5.94 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:30,2:0.077:2:0:.:0|1:248084449_A_T:985,81:18:12 0/0:48,0:0.00:0:0:.:0|1:248084449_A_T:1731,0:17:31
chr1 248084476 . C A . clustered_events;homologous_mapping_event;t_lod_fstar ECNT=9;HCNT=2;MAX_ED=30;MIN_ED=3;NLOD=10.84;TLOD=5.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:29,2:0.074:2:0:0.00:0|1:248084449_A_T:1026,74:17:12 0/0:48,0:0.00:0:0:.:0|1:248084449_A_T:1877,0:17:31
chr1 248084479 . C T . clustered_events;homologous_mapping_event;t_lod_fstar ECNT=9;HCNT=2;MAX_ED=30;MIN_ED=3;NLOD=10.84;TLOD=5.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:27,2:0.074:2:0:0.00:0|1:248084449_A_T:1002,73:16:11 0/0:48,0:0.00:0:0:.:0|1:248084449_A_T:1859,0:16:32
chr1 248166942 . T C . clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar ECNT=3;HCNT=8;MAX_ED=6;MIN_ED=5;NLOD=23.48;TLOD=4.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:91,1:0.026:0:1:0.00:0|1:248166942_T_C:3476,34:49:42 0/0:91,1:0.00:0:1:0.00:0|1:248166942_T_C:3379,39:46:45
chr1 248166947 . T C . clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar ECNT=3;HCNT=8;MAX_ED=6;MIN_ED=5;NLOD=24.08;TLOD=4.98 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:91,3:0.026:2:1:0.667:0|1:248166942_T_C:3377,119:48:43 0/0:96,1:0.00:0:1:0.00:0|1:248166942_T_C:3420,37:48:48
chr1 248166948 . T C . clustered_events;homologous_mapping_event;t_lod_fstar ECNT=3;HCNT=8;MAX_ED=6;MIN_ED=5;NLOD=24.08;TLOD=4.98 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:91,3:0.026:2:1:0.667:0|1:248166942_T_C:3315,94:49:42 0/0:95,0:0.00:0:0:.:0|1:248166942_T_C:3415,0:47:48
chr1 248329013 rs9435886 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,76:0:0 0/0:4,0:0.00:0:0:.:140,0:2:2
chr1 248524799 . AACAC A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.21;RPA=9,7;RU=AC;STR;TLOD=6.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,2:0.286:0:2:.:191,76:3:2 0/0:7,0:0.00:0:0:.:251,0:4:3
chr1 248737293 rs200427293 G A . alt_allele_in_normal;germline_risk DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=1.01;TLOD=8.47 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:62,4:0.056:2:2:0.500:2537,162:26:36 0/0:85,13:0.122:4:9:0.308:3426,499:40:45
chr1 248738183 rs1782199 G T . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=4.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,2:0.182:1:1:0.500:352,81:5:4 0/0:8,0:0.00:0:0:.:315,0:3:5
chr1 248813168 rs2802082 T C . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=5.53 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:22,2:0.100:1:1:0.500:845,81:17:5 0/0:16,1:0.067:1:0:1.00:588,40:9:7
chr2 1554188 rs12989106 T G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.857;TLOD=13.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:2:2:0.500:0,165:0:0 0/0:4,0:0.00:0:0:.:124,0:1:3
chr2 1652455 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=25.28;TLOD=73.27 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:46,32:0.373:17:15:0.531:1898,1169:21:25 0/0:99,0:0.00:0:0:.:3978,0:51:48
chr2 1913874 rs2241684 C A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=13.99 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,4:0.333:1:3:0.750:350,154:5:4 0/0:7,0:0.00:0:0:.:275,0:5:2
chr2 1969704 rs11687359 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,79:0:0 0/0:4,0:0.00:0:0:.:132,0:3:1
chr2 3750061 rs142516533 C T . PASS DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=16.51;TLOD=45.82 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:36,16:0.333:7:9:0.563:1292,620:20:16 0/0:69,1:0.00:0:1:1.00:2469,38:24:45
chr2 3751213 rs62106595 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=37.24 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,13:0.556:5:8:0.615:358,498:1:8 0/0:14,0:0.00:0:0:.:555,0:7:7
chr2 10953001 rs6736810 G T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=22.92 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,6:0.667:6:0:1.00:121,227:1:2 0/0:4,0:0.00:0:0:.:145,0:3:1
chr2 11273436 . GCA G . str_contraction ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=7.35;RPA=8,7;RU=CA;STR;TLOD=7.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:36,7:0.129:5:2:.:1270,268:21:15 0/0:45,1:0.029:1:0:.:1584,32:26:19
chr2 20026183 rs12616490 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:1:2:0.333:116,119:3:0 0/0:5,0:0.00:0:0:.:184,0:2:3
chr2 20026319 rs10191506 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=12.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,5:0.667:1:4:0.200:111,169:3:0 0/0:6,0:0.00:0:0:.:198,0:3:3
chr2 23677053 rs13417938 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=8.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.667:0:3:1.00:57,121:0:2 0/0:4,0:0.00:0:0:.:159,0:2:2
chr2 26178494 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.08;TLOD=58.77 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:33,26:0.381:15:11:0.577:1326,1029:16:17 0/0:38,0:0.00:0:0:.:1467,0:21:17
chr2 28236090 . G C . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=17.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:17,6:0.250:1:5:0.167:702,252:7:10 0/0:24,0:0.00:0:0:.:978,0:14:10
chr2 36810352 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=7.74 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:1:2:0.333:119,92:2:1 0/0:12,0:0.00:0:0:.:485,0:7:5
chr2 47083030 rs3835756 ATG A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=12.67 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,5:0.308:3:2:.:320,184:8:2 0/0:8,0:0.00:0:0:.:295,0:5:3
chr2 54873492 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=5.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,2:0.100:2:0:1.00:935,70:11:12 0/0:32,0:0.00:0:0:.:1266,0:18:14
chr2 55436639 . G T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.93;TLOD=5.53 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:33,2:0.071:2:0:1.00:1342,77:20:13 0/0:39,0:0.00:0:0:.:1593,0:20:19
chr2 55789414 rs12991267 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.22 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:2:2:0.500:0,139:0:0 0/0:4,0:0.00:0:0:.:147,0:2:2
chr2 59250019 . C T . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.78;TLOD=18.79 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,8:0.462:2:6:0.750:275,282:4:3 0/0:29,0:0.00:0:0:.:1108,0:18:11
chr2 61415050 . T C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=29.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:18,9:0.364:4:5:0.444:690,374:5:13 0/0:25,0:0.00:0:0:.:908,0:8:17
chr2 61522047 rs35292974 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=7.77 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:1:1:0.500:78,81:2:0 0/0:6,0:0.00:0:0:.:229,0:5:1
chr2 65382315 . G C . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=7.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,66:0:0 0/0:4,0:0.00:0:0:.:160,0:4:0
chr2 69002501 . G A . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=24.68;TLOD=61.68 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:86,24:0.226:13:11:0.542:3554,880:39:47 0/0:101,0:0.00:0:0:.:4036,0:51:50
chr2 70015158 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=45.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:48,20:0.269:10:10:0.500:1982,749:27:21 0/0:61,0:0.00:0:0:.:2462,0:23:38
chr2 71039797 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.83;TLOD=16.51 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,5:0.217:2:3:0.600:822,199:9:11 0/0:31,0:0.00:0:0:.:1222,0:10:21
chr2 71061288 . C A . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,2:0.400:2:0:0.00:128,74:3:0 0/0:5,0:0.00:0:0:.:186,0:2:3
chr2 73302776 . C T . PASS ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=12.34;TLOD=41.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:43,17:0.273:10:7:0.412:1581,668:15:28 0/0:51,0:0.00:0:0:.:1732,0:24:27
chr2 73681170 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=18.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,5:0.333:2:3:0.400:625,206:3:12 0/0:25,0:0.00:0:0:.:1010,0:14:11
chr2 74165993 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=6.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,2:0.182:1:1:0.500:442,74:7:4 0/0:8,0:0.00:0:0:.:323,0:5:3
chr2 78020021 . C G . germline_risk ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,84:0:0 0/0:9,0:0.00:0:0:.:360,0:0:9
chr2 84851325 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=12.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.600:1:2:0.333:76,124:1:1 0/0:10,0:0.00:0:0:.:398,0:8:2
chr2 84950006 rs1192336 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=11.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,3:0.429:1:2:0.333:172,126:4:1 0/0:5,0:0.00:0:0:.:168,0:3:2
chr2 87355912 rs201336213 C T . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=4;MAX_ED=61;MIN_ED=61;NLOD=2.95;TLOD=13.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,4:0.444:1:3:0.750:181,158:3:2 0/0:29,2:0.080:1:1:0.500:1056,76:14:15
chr2 87355973 . G T . clustered_events;t_lod_fstar ECNT=2;HCNT=4;MAX_ED=61;MIN_ED=61;NLOD=8.13;TLOD=5.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,2:0.222:0:2:0.00:452,82:7:4 0/0:34,0:0.00:0:0:.:1328,0:17:17
chr2 87582444 rs62145347 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=4.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.667:3:0:0.00:84,117:0:2 0/0:9,0:0.00:0:0:.:334,0:4:5
chr2 89104847 rs143824665 C T . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=3.15;TLOD=4.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:22,4:0.143:2:2:0.500:896,140:10:12 0/0:32,2:0.077:1:1:0.500:1274,76:19:13
chr2 89265583 . T C . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=10.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,3:0.300:2:1:0.667:248,122:2:5 0/0:6,0:0.00:0:0:.:211,0:5:1
chr2 89399425 . A T . alt_allele_in_normal;clustered_events ECNT=5;HCNT=13;MAX_ED=32;MIN_ED=5;NLOD=24.40;TLOD=7.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:105,4:0.032:4:0:0.00:0|1:89399425_A_T:3937,146:50:55 0/0:121,3:0.010:2:1:0.333:0|1:89399425_A_T:4371,102:62:59
chr2 89399430 . T C . alt_allele_in_normal;clustered_events ECNT=5;HCNT=13;MAX_ED=32;MIN_ED=5;NLOD=22.01;TLOD=7.77 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:107,5:0.033:4:1:0.800:0|1:89399425_A_T:4238,198:51:56 0/0:125,4:0.020:2:2:0.500:0|1:89399425_A_T:4765,147:63:62
chr2 89399448 . G A . alt_allele_in_normal;clustered_events ECNT=5;HCNT=13;MAX_ED=32;MIN_ED=5;NLOD=16.30;TLOD=7.64 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:113,5:0.030:4:1:0.800:0|1:89399448_G_A:4153,198:58:55 0/0:120,5:0.030:3:2:0.600:0|1:89399448_G_A:4256,179:62:58
chr2 89399455 rs193208674 T C . alt_allele_in_normal;clustered_events DB;ECNT=5;HCNT=13;MAX_ED=32;MIN_ED=5;NLOD=16.60;TLOD=7.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:123,5:0.029:4:1:0.800:0|1:89399448_G_A:4860,204:64:59 0/0:121,5:0.030:3:2:0.600:0|1:89399448_G_A:4720,183:63:58
chr2 89399457 . T G . alt_allele_in_normal;clustered_events ECNT=5;HCNT=13;MAX_ED=32;MIN_ED=5;NLOD=16.00;TLOD=7.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:122,5:0.029:4:1:0.800:0|1:89399448_G_A:4685,213:63:59 0/0:123,5:0.031:3:2:0.600:0|1:89399448_G_A:4499,204:65:58
chr2 89399495 . T G . alt_allele_in_normal;clustered_events ECNT=5;HCNT=23;MAX_ED=47;MIN_ED=5;NLOD=15.41;TLOD=7.61 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:126,5:0.029:4:1:0.800:0|1:89399495_T_G:4744,210:65:61 0/0:136,6:0.036:3:3:0.500:0|1:89399495_T_G:4951,244:72:64
chr2 89399500 . G A . alt_allele_in_normal;clustered_events ECNT=5;HCNT=23;MAX_ED=47;MIN_ED=5;NLOD=16.62;TLOD=7.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:129,5:0.029:4:1:0.800:0|1:89399495_T_G:5149,195:67:62 0/0:143,6:0.035:3:3:0.500:0|1:89399495_T_G:5649,221:75:68
chr2 89399501 . A G . alt_allele_in_normal;clustered_events ECNT=5;HCNT=23;MAX_ED=47;MIN_ED=5;NLOD=16.62;TLOD=7.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:129,5:0.029:4:1:0.200:0|1:89399495_T_G:4660,210:67:62 0/0:143,6:0.035:3:3:0.500:0|1:89399495_T_G:5038,237:75:68
chr2 89399530 rs2848409 A T . alt_allele_in_normal;clustered_events DB;ECNT=5;HCNT=22;MAX_ED=47;MIN_ED=5;NLOD=11.58;TLOD=18.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:134,10:0.065:7:3:0.300:5051,346:78:56 0/0:144,13:0.065:6:7:0.538:5301,469:78:66
chr2 89399542 rs201278273 T G . alt_allele_in_normal;clustered_events;germline_risk DB;ECNT=5;HCNT=26;MAX_ED=47;MIN_ED=5;NLOD=1.41;TLOD=20.11 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:138,14:0.068:10:4:0.714:5076,556:82:56 0/0:144,16:0.080:7:9:0.438:5094,642:77:67
chr2 89417414 . T A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.01;TLOD=15.70 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,5:0.500:4:1:0.800:189,174:3:2 0/0:10,0:0.00:0:0:.:365,0:2:8
chr2 89512959 rs144881289 C T . alt_allele_in_normal DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.99;TLOD=8.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:82,7:0.066:1:6:0.857:3338,263:46:36 0/0:107,8:0.064:5:3:0.375:4295,275:51:56
chr2 90414086 . A G . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=4.86;TLOD=5.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:61,0:0.038:0:0:.:2311,0:28:33 0/0:73,5:0.063:5:0:0.00:2631,186:39:34
chr2 91683147 rs2599220 G A . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=10.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:2:2:0.500:0,154:0:0 0/0:3,0:0.00:0:0:.:122,0:2:1
chr2 91774728 rs6745522 G A . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=13;MIN_ED=13;NLOD=0.903;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.667:0|1:91774728_G_A:0,113:0:0 0/0:4,0:0.00:0:0:.:0|1:91774728_G_A:162,0:3:1
chr2 91774741 rs6745527 G A . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=13;MIN_ED=13;NLOD=0.903;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.667:0|1:91774728_G_A:0,105:0:0 0/0:4,0:0.00:0:0:.:0|1:91774728_G_A:136,0:3:1
chr2 91778108 . CCT C . alt_allele_in_normal;clustered_events;str_contraction;t_lod_fstar ECNT=2;HCNT=10;MAX_ED=3;MIN_ED=3;NLOD=6.03;RPA=9,8;RU=CT;STR;TLOD=4.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:29,3:0.143:0:3:.:660,123:8:8 0/0:34,1:0.050:1:0:.:906,40:11:12
chr2 91778111 . C A . clustered_events;t_lod_fstar ECNT=2;HCNT=5;MAX_ED=3;MIN_ED=3;NLOD=11.09;TLOD=4.51 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:34,3:0.071:0:3:1.00:1294,116:17:17 0/0:44,0:0.00:0:0:.:1685,0:22:22
chr2 91917376 rs2659427 G A . germline_risk DB;ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=6.82 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.667:1:1:0.500:84,76:2:0 0/0:4,0:0.00:0:0:.:127,0:2:2
chr2 96593280 rs77390827 T C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,3:0.333:2:1:0.667:151,106:1:3 0/0:5,0:0.00:0:0:.:180,0:3:2
chr2 96604752 . G A . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.45;TLOD=4.03 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,2:0.111:2:0:1.00:637,72:4:12 0/0:33,1:0.031:0:1:0.00:1302,35:15:18
chr2 96611038 . T A . alt_allele_in_normal;clustered_events ECNT=2;HCNT=10;MAX_ED=31;MIN_ED=31;NLOD=11.31;TLOD=12.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:43,5:0.119:5:0:1.00:1670,196:17:26 0/0:75,4:0.030:3:1:0.750:2739,154:34:41
chr2 96611069 . T G . alt_allele_in_normal;clustered_events ECNT=2;HCNT=13;MAX_ED=31;MIN_ED=31;NLOD=8.72;TLOD=10.99 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,4:0.200:4:0:1.00:638,159:6:10 0/0:49,2:0.022:2:0:1.00:1920,80:24:25
chr2 97533539 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=14.40;TLOD=4.21 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:48,3:0.050:3:0:1.00:1938,104:14:34 0/0:68,0:0.00:0:0:.:2690,0:42:26
chr2 100218010 . CGCT C . str_contraction;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.29;RPA=7,6;RU=GCT;STR;TLOD=5.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:26,2:0.095:1:1:.:939,69:12:14 0/0:27,0:0.00:0:0:.:904,0:16:11
chr2 101564887 . G T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.27;TLOD=11.85 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.750:2:2:0.500:38,153:0:1 0/0:13,0:0.00:0:0:.:493,0:5:8
chr2 103141475 . C T . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=21.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,6:0.353:4:2:0.333:563,239:7:8 0/0:24,0:0.00:0:0:.:970,0:6:18
chr2 103349002 rs3821209 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.333:1:1:0.500:146,85:3:1 0/0:4,0:0.00:0:0:.:142,0:2:2
chr2 105869624 rs57463591 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,82:0:0 0/0:4,0:0.00:0:0:.:165,0:2:2
chr2 105891935 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=5.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:18,1:0.095:0:1:1.00:732,37:4:14 0/0:20,0:0.00:0:0:.:784,0:9:11
chr2 107042610 . G T . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=2;HCNT=4;MAX_ED=81;MIN_ED=81;NLOD=10.53;TLOD=4.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:48,4:0.071:3:1:0.750:1850,120:22:26 0/0:66,2:0.020:0:2:0.00:2465,74:31:35
chr2 107042691 . C T . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=2;HCNT=6;MAX_ED=81;MIN_ED=81;NLOD=3.15;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:17,2:0.118:1:1:0.500:668,70:8:9 0/0:25,1:0.042:1:0:0.00:1017,36:12:13
chr2 107118879 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=10.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,4:0.308:0:4:1.00:377,125:6:4 0/0:17,0:0.00:0:0:.:649,0:10:7
chr2 107608120 . T C . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,83:0:0 0/0:5,0:0.00:0:0:.:178,0:4:1
chr2 113835114 . TCTC T . germline_risk;str_contraction ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.49;RPA=8,7;RU=CTC;STR;TLOD=7.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:.:39,68:1:0 0/0:7,0:0.00:0:0:.:221,0:2:5
chr2 114369810 . C A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=14.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,5:0.400:2:3:0.600:201,195:4:2 0/0:15,0:0.00:0:0:.:530,0:9:6
chr2 116497527 . C T . PASS ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=10.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,3:0.250:1:2:0.667:357,116:5:5 0/0:23,0:0.00:0:0:.:757,0:14:9
chr2 118850785 rs72489038 AGATGAT A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.40;RPA=13,11;RU=GAT;STR;TLOD=22.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,9:0.700:1:8:.:116,354:2:1 0/0:10,0:0.00:0:0:.:367,0:5:5
chr2 120787427 . T C . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,77:0:0 0/0:5,0:0.00:0:0:.:198,0:4:1
chr2 127773880 rs11899372 G T . clustered_events;germline_risk DB;ECNT=2;HCNT=1;MAX_ED=18;MIN_ED=18;NLOD=0.903;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:0|1:127773880_G_T:42,74:1:0 0/0:4,0:0.00:0:0:.:0|1:127773880_G_T:155,0:2:2
chr2 127773898 rs11903472 C A . clustered_events;germline_risk DB;ECNT=2;HCNT=1;MAX_ED=18;MIN_ED=18;NLOD=0.903;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:0|1:127773880_G_T:36,79:1:0 0/0:4,0:0.00:0:0:.:0|1:127773880_G_T:140,0:2:2
chr2 128252778 rs12616200 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,77:0:0 0/0:4,0:0.00:0:0:.:162,0:3:1
chr2 128369879 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.54;TLOD=5.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:52,3:0.045:3:0:0.00:1954,117:25:27 0/0:52,0:0.00:0:0:.:1968,0:28:24
chr2 129535158 rs76231360 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.400:2:2:0.500:100,162:2:1 0/0:4,0:0.00:0:0:.:161,0:1:3
chr2 130764208 rs116896255 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.667:0:3:1.00:36,113:1:0 0/0:4,0:0.00:0:0:.:134,0:2:2
chr2 130967085 rs6742313 T C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.400:2:0:1.00:152,61:2:2 0/0:4,0:0.00:0:0:.:144,0:3:1
chr2 130987320 rs111986150 A G . clustered_events DB;ECNT=2;HCNT=8;MAX_ED=24;MIN_ED=24;NLOD=6.02;TLOD=10.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:25,4:0.174:2:2:0.500:973,152:9:16 0/0:22,0:0.00:0:0:.:817,0:9:13
chr2 130987344 rs113863640 A G . alt_allele_in_normal;clustered_events;t_lod_fstar DB;ECNT=2;HCNT=8;MAX_ED=24;MIN_ED=24;NLOD=6.92;TLOD=4.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:32,2:0.080:1:1:0.500:1228,77:14:18 0/0:26,1:0.042:1:0:0.00:971,34:11:15
chr2 130989185 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.72;TLOD=59.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:28,22:0.395:14:8:0.636:1125,833:16:12 0/0:43,1:0.025:0:1:0.00:1700,38:26:17
chr2 132156787 rs12614578 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:0:3:0.00:112,118:2:1 0/0:4,0:0.00:0:0:.:146,0:3:1
chr2 133020495 rs145359076 C T . germline_risk DB;ECNT=2;HCNT=12;MAX_ED=1;MIN_ED=1;NLOD=0.903;TLOD=11.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:4,3:0.429:1:2:0.667:0|1:133020495_C_T:144,115:1:3 0/0:3,0:0.00:0:0:.:0|1:133020495_C_T:120,0:2:1
chr2 133020496 rs74896529 A G . germline_risk DB;ECNT=2;HCNT=12;MAX_ED=1;MIN_ED=1;NLOD=0.903;TLOD=11.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:4,3:0.429:1:2:0.667:0|1:133020495_C_T:146,124:1:3 0/0:3,0:0.00:0:0:.:0|1:133020495_C_T:114,0:2:1
chr2 136604110 rs78526058 GC G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=7.27 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:.:41,82:1:0 0/0:7,0:0.00:0:0:.:290,0:1:6
chr2 138762873 rs3842548 C CTT . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;RPA=2,4;RU=T;STR;TLOD=18.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,6:0.556:4:2:.:162,247:0:4 0/0:6,0:0.00:0:0:.:247,0:4:2
chr2 141115516 . C A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=44.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,18:0.394:8:10:0.556:959,690:17:7 0/0:42,0:0.00:0:0:.:1621,0:23:19
chr2 141291498 rs16844175 A C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=15.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,4:0.444:1:3:0.750:184,160:1:4 0/0:7,0:0.00:0:0:.:253,0:1:6
chr2 145188050 rs147695024 GAC G . str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.81;RPA=7,6;RU=AC;STR;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,2:0.095:2:0:.:892,84:11:12 0/0:35,0:0.00:0:0:.:1229,0:20:15
chr2 146718353 . G A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,73:0:0 0/0:4,0:0.00:0:0:.:165,0:2:2
chr2 150070892 rs6711281 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=16.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.800:3:1:0.750:38,163:1:0 0/0:4,0:0.00:0:0:.:148,0:2:2
chr2 151817463 rs6739724 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:2:0:1.00:39,70:1:0 0/0:4,0:0.00:0:0:.:148,0:3:1
chr2 152486333 rs147371427 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:2:0:1.00:76,75:0:2 0/0:4,0:0.00:0:0:.:153,0:2:2
chr2 157186821 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=16.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,5:0.455:4:1:0.800:283,179:4:3 0/0:8,0:0.00:0:0:.:319,0:4:4
chr2 159522979 . G T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=5.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,1:0.133:0:1:0.00:629,12:7:8 0/0:17,0:0.00:0:0:.:653,0:4:13
chr2 160241936 rs1469015 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=12.47 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.750:1:2:0.667:34,123:1:0 0/0:5,0:0.00:0:0:.:173,0:2:3
chr2 162279850 rs139857158 GCT G . str_contraction;t_lod_fstar DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=11.10;RPA=8,7;RU=CT;STR;TLOD=5.04 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:31,4:0.088:0:4:.:1156,160:9:22 0/0:37,0:0.00:0:0:.:1447,0:17:20
chr2 166901494 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.38;TLOD=34.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:12,10:0.474:5:5:0.500:349,399:6:6 0/0:35,0:0.00:0:0:.:1272,0:20:15
chr2 173679371 rs3754766 C G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=8.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:2:0:0.00:42,80:0:1 0/0:6,0:0.00:0:0:.:246,0:3:3
chr2 173751636 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,75:0:0 0/0:4,0:0.00:0:0:.:155,0:2:2
chr2 175992054 . T A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=13.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,7:0.364:2:5:0.286:467,250:8:5 0/0:22,0:0.00:0:0:.:803,0:13:9
chr2 179429392 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.39;TLOD=13.30 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:26,6:0.167:5:1:0.167:1053,248:14:12 0/0:47,0:0.00:0:0:.:1873,0:26:21
chr2 179457237 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.03;TLOD=27.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:25,11:0.276:2:9:0.818:983,434:16:9 0/0:36,0:0.00:0:0:.:1416,0:21:15
chr2 179497971 . A T . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=10.54;TLOD=35.61 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:29,14:0.323:11:3:0.214:1145,555:15:14 0/0:42,0:0.00:0:0:.:1595,0:21:21
chr2 183597101 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=5.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,2:0.200:2:0:0.00:326,72:2:6 0/0:12,0:0.00:0:0:.:483,0:7:5
chr2 188816704 rs180954964 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=8.98 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:4:0:0.00:0,162:0:0 0/0:5,0:0.00:0:0:.:179,0:5:0
chr2 194885165 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,79:0:0 0/0:5,0:0.00:0:0:.:203,0:0:5
chr2 202131187 . A T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.44;TLOD=26.79 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,9:0.320:6:3:0.333:754,341:11:9 0/0:49,0:0.00:0:0:.:1740,0:25:24
chr2 202149808 . C T . PASS ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=17.11;TLOD=42.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:28,16:0.351:5:11:0.688:1121,573:17:11 0/0:70,0:0.00:0:0:.:2776,0:28:42
chr2 202357742 . C A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=28.74 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,9:0.571:5:4:0.444:293,329:3:4 0/0:37,0:0.00:0:0:.:1515,0:18:19
chr2 206529113 rs10599280 TCAC T . germline_risk;str_contraction DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;RPA=8,7;RU=CAC;STR;TLOD=14.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.667:3:1:.:78,159:2:0 0/0:9,0:0.00:0:0:.:345,0:4:5
chr2 206991456 . TG T . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.43;RPA=2,1;RU=G;STR;TLOD=7.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,4:0.214:4:0:.:599,162:6:9 0/0:44,0:0.00:0:0:.:1650,0:23:21
chr2 206993220 . G T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,76:0:0 0/0:4,0:0.00:0:0:.:132,0:3:1
chr2 208976955 rs10932241 A C . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=4;HCNT=2;MAX_ED=20;MIN_ED=14;NLOD=1.20;TLOD=17.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,9:0.556:5:4:0.444:175,348:3:2 0/0:4,0:0.00:0:0:.:147,0:3:1
chr2 208976969 rs11899959 C A . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=4;HCNT=2;MAX_ED=20;MIN_ED=14;NLOD=1.51;TLOD=24.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:6,10:0.600:5:5:0.500:0|1:208976969_C_A:213,350:4:2 0/0:5,0:0.00:0:0:.:0|1:208976969_C_A:203,0:4:1
chr2 208976972 rs71350713 G C . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=4;HCNT=2;MAX_ED=20;MIN_ED=14;NLOD=1.51;TLOD=24.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:6,10:0.600:5:5:0.500:0|1:208976969_C_A:221,358:4:2 0/0:5,0:0.00:0:0:.:0|1:208976969_C_A:175,0:4:1
chr2 208976975 rs11884219 T C . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=4;HCNT=2;MAX_ED=20;MIN_ED=14;NLOD=1.51;TLOD=24.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:6,10:0.600:5:5:0.500:0|1:208976969_C_A:214,380:4:2 0/0:5,0:0.00:0:0:.:0|1:208976969_C_A:167,0:4:1
chr2 210650863 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=40.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:39,14:0.286:8:6:0.571:1575,535:24:15 0/0:52,0:0.00:0:0:.:2069,0:28:24
chr2 210794639 . G T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=11.76 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:25,6:0.182:3:3:0.500:968,222:11:14 0/0:37,0:0.00:0:0:.:1475,0:17:20
chr2 211162998 rs7592060 G A . germline_risk DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=12.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.571:4:0:1.00:118,151:1:2 0/0:6,0:0.00:0:0:.:252,0:6:0
chr2 212426884 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=15.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,4:0.400:2:2:0.500:350,161:3:6 0/0:15,0:0.00:0:0:.:604,0:11:4
chr2 215848019 . A G . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=9.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,3:0.273:1:2:0.667:358,120:3:6 0/0:17,0:0.00:0:0:.:647,0:8:9
chr2 219305348 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=10.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,3:0.333:2:1:0.333:318,113:4:4 0/0:19,0:0.00:0:0:.:759,0:9:10
chr2 220361801 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=32.36;TLOD=132.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:86,44:0.352:22:22:0.500:3088,1666:39:47 0/0:129,0:0.00:0:0:.:4404,0:66:63
chr2 220427249 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.37;TLOD=61.74 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:50,25:0.340:9:16:0.360:1868,946:26:24 0/0:90,0:0.00:0:0:.:3225,0:47:43
chr2 225079234 rs3081010 CCT C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.667:2:1:.:40,117:0:1 0/0:4,0:0.00:0:0:.:150,0:2:2
chr2 227661395 rs138975702 TTGC T . alt_allele_in_normal;str_contraction DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.68;RPA=7,6;RU=TGC;STR;TLOD=7.21 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:88,5:0.040:2:3:.:3252,183:44:44 0/0:90,2:0.014:1:1:.:3254,70:46:44
chr2 227896652 rs13423714 C G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=43.19 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,13:0.733:6:7:0.538:197,516:5:0 0/0:13,0:0.00:0:0:.:508,0:6:7
chr2 227925097 rs6436650 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:1:1:0.500:71,79:1:1 0/0:4,0:0.00:0:0:.:133,0:1:3
chr2 227966148 rs16823202 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.82 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:0:3:1.00:117,112:2:1 0/0:5,0:0.00:0:0:.:192,0:2:3
chr2 227985766 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.63;TLOD=44.21 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:31,16:0.351:2:14:0.125:1152,585:13:18 0/0:42,0:0.00:0:0:.:1537,0:19:23
chr2 231864289 rs2136474 A C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=19.49 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,6:0.500:1:5:0.833:194,250:2:3 0/0:9,0:0.00:0:0:.:322,0:3:6
chr2 232298812 rs13017932 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.400:0:3:1.00:120,122:2:1 0/0:4,0:0.00:0:0:.:143,0:1:3
chr2 232948468 rs367705912 G C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,83:0:0 0/0:4,0:0.00:0:0:.:157,0:2:2
chr2 233271697 rs369374441 TAC T . alt_allele_in_normal;str_contraction DB;ECNT=1;HCNT=8;MAX_ED=.;MIN_ED=.;NLOD=13.36;RPA=9,8;RU=AC;STR;TLOD=12.14 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:140,13:0.084:9:4:.:5110,482:81:59 0/0:86,5:0.042:4:1:.:3037,188:47:39
chr2 233348785 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=4.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:72,3:0.033:1:2:0.667:2901,115:31:41 0/0:57,0:0.00:0:0:.:2237,0:28:29
chr2 234359653 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.59;TLOD=5.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:47,2:0.057:0:2:1.00:1938,77:18:29 0/0:42,0:0.00:0:0:.:1623,0:25:17
chr2 234526242 rs201281571 C A . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=4;MAX_ED=46;MIN_ED=46;NLOD=7.01;TLOD=31.76 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:76,12:0.143:6:6:0.500:2709,465:36:40 0/0:69,6:0.061:2:4:0.667:2517,222:38:31
chr2 234526288 . G C . alt_allele_in_normal;clustered_events ECNT=2;HCNT=6;MAX_ED=46;MIN_ED=46;NLOD=12.92;TLOD=27.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:128,12:0.090:6:6:0.500:4929,484:62:66 0/0:101,6:0.047:2:4:0.333:3768,226:51:50
chr2 234678110 rs145239529 CGT C . str_contraction;t_lod_fstar DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=7.51;RPA=7,6;RU=GT;STR;TLOD=5.71 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:46,3:0.081:2:1:.:1672,111:27:19 0/0:30,0:0.00:0:0:.:1090,0:13:17
chr2 237032458 rs117273094 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=7.82 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:36,77:0:1 0/0:6,0:0.00:0:0:.:191,0:2:4
chr2 239141352 . G T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.34;TLOD=19.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:34,7:0.194:4:3:0.571:1343,265:10:24 0/0:52,0:0.00:0:0:.:2102,0:31:21
chr2 239229644 rs6716870 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=14.49 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,4:0.444:1:3:0.250:194,158:0:5 0/0:2,0:0.00:0:0:.:79,0:1:1
chr2 239580956 rs66849943 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=9.79 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.600:1:2:0.333:77,125:1:1 0/0:3,0:0.00:0:0:.:110,0:0:3
chr2 241619743 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.93;TLOD=9.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,5:0.313:4:1:0.800:558,190:7:8 0/0:97,0:0.00:0:0:.:3698,0:50:47
chr2 241658567 rs201733233 C T . PASS DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=74.39 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:65,27:0.324:20:7:0.259:2341,1016:28:37 0/0:53,0:0.00:0:0:.:1885,0:23:30
chr2 241696840 . ATCCTCC A . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.49;RPA=11,9;RU=TCC;STR;TLOD=4.61 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:98,2:0.048:1:1:.:2113,72:25:40 0/0:57,4:0.080:1:2:.:926,110:16:15
chr2 241816253 rs5013751 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.857;TLOD=10.85 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,3:0.429:1:2:0.333:201,115:5:0 0/0:4,0:0.00:0:0:.:130,0:3:1
chr2 242285545 rs11683764 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.32;TLOD=4.68 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,2:0.118:0:2:1.00:736,64:14:5 0/0:9,0:0.00:0:0:.:288,0:6:3
chr2 242750566 . C A . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.80;TLOD=13.98 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,4:0.364:2:2:0.500:283,152:5:2 0/0:7,0:0.00:0:0:.:271,0:5:2
chr2 242758455 . T TG . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.59;RPA=8,9;RU=G;STR;TLOD=5.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,10:0.381:5:5:.:528,341:10:5 0/0:21,2:0.059:2:0:.:728,52:14:7
chr2 243061143 rs202109001 A G . PASS DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:0:2:1.00:37,84:0:1 0/0:14,0:0.00:0:0:.:507,0:9:5
chr3 4741767 . G T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=7.92 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:0:2:0.00:40,78:1:0 0/0:9,0:0.00:0:0:.:345,0:6:3
chr3 5161285 rs199996083 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,82:0:0 0/0:4,0:0.00:0:0:.:153,0:0:4
chr3 6168597 . G T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,80:0:0 0/0:5,0:0.00:0:0:.:202,0:0:5
chr3 7649819 rs115155482 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=8.68 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,78:0:0 0/0:4,0:0.00:0:0:.:112,0:2:2
chr3 14535178 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=6.30 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:18,3:0.118:3:0:1.00:750,118:12:6 0/0:38,0:0.00:0:0:.:1530,0:22:16
chr3 14568894 . GGAAA G . germline_risk;str_contraction ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.752;RPA=2,1;RU=GAAA;STR;TLOD=7.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:.:0,57:0:0 0/0:3,0:0.00:0:0:.:110,0:3:0
chr3 15282163 . C CA . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.20;RPA=9,10;RU=A;STR;TLOD=4.26 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,10:0.750:3:7:.:134,409:0:4 0/0:32,0:0.00:0:0:.:1264,0:14:18
chr3 15762641 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=7.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.667:0:3:0.00:42,118:0:1 0/0:8,0:0.00:0:0:.:326,0:6:2
chr3 30715660 . G A . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.93;TLOD=33.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:17,19:0.458:10:9:0.526:682,669:10:7 0/0:45,0:0.00:0:0:.:1828,0:25:20
chr3 38037319 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.86;TLOD=5.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:43,2:0.057:2:0:0.00:1693,76:23:20 0/0:70,0:0.00:0:0:.:2752,0:37:33
chr3 38367159 . G T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,65:0:0 0/0:5,0:0.00:0:0:.:200,0:5:0
chr3 39229334 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=26.79;TLOD=4.67 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:61,3:0.038:2:1:0.667:2301,114:31:30 0/0:105,0:0.00:0:0:.:3983,0:47:58
chr3 42234583 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.14;TLOD=45.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,13:0.480:4:9:0.308:748,529:13:6 0/0:49,0:0.00:0:0:.:1939,0:25:24
chr3 42265399 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=25.49 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,7:0.438:4:3:0.571:443,280:6:5 0/0:32,0:0.00:0:0:.:1287,0:18:14
chr3 46006537 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.74;TLOD=47.49 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,14:0.750:8:6:0.429:248,541:5:1 0/0:46,0:0.00:0:0:.:1827,0:27:19
chr3 48627889 . G A . PASS ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=38.23;TLOD=166.82 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,64:0.580:31:33:0.484:1461,2274:16:21 0/0:161,0:0.00:0:0:.:6473,0:88:73
chr3 48681765 . CAG C . alt_allele_in_normal;str_contraction;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.37;RPA=11,10;RU=AG;STR;TLOD=5.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,5:0.333:2:2:.:416,157:5:5 0/0:21,2:0.048:0:2:.:790,55:9:12
chr3 48696753 . C A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=17.16;TLOD=5.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:43,4:0.056:0:4:1.00:1745,147:23:20 0/0:66,0:0.00:0:0:.:2645,0:30:36
chr3 48718388 rs9877794 G C . germline_risk DB;ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=1.51;TLOD=18.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:3:1:0.750:0|1:48718388_G_C:0,166:0:0 0/0:5,0:0.00:0:0:.:0|1:48718388_G_C:201,0:5:0
chr3 48718390 rs9877501 C G . germline_risk DB;ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=1.51;TLOD=18.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:3:1:0.250:0|1:48718388_G_C:0,169:0:0 0/0:5,0:0.00:0:0:.:0|1:48718388_G_C:198,0:5:0
chr3 50294995 . G A . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.71;TLOD=8.84 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:28,5:0.111:4:1:0.800:1009,165:10:18 0/0:59,0:0.00:0:0:.:1897,0:28:31
chr3 50330907 . A C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.14;TLOD=46.19 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,15:0.481:4:11:0.733:606,565:8:8 0/0:46,0:0.00:0:0:.:1786,0:23:23
chr3 52568250 . C A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,74:0:0 0/0:5,0:0.00:0:0:.:196,0:2:3
chr3 52570624 . C T . germline_risk ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=11.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.750:1:2:0.667:41,111:1:0 0/0:5,0:0.00:0:0:.:202,0:3:2
chr3 53154132 rs373476566 ATTAACT A . clustered_events;germline_risk DB;ECNT=2;HCNT=1;MAX_ED=7;MIN_ED=7;NLOD=0.903;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:.:0|1:53154132_ATTAACT_A:0,78:0:0 0/0:4,0:0.00:0:0:.:0|1:53154132_ATTAACT_A:145,0:1:3
chr3 53154139 rs199819350 GCACT G . clustered_events;germline_risk DB;ECNT=2;HCNT=1;MAX_ED=7;MIN_ED=7;NLOD=0.903;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:.:0|1:53154132_ATTAACT_A:0,82:0:0 0/0:4,0:0.00:0:0:.:0|1:53154132_ATTAACT_A:165,0:1:3
chr3 60191552 rs6787176 T C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,85:0:0 0/0:4,0:0.00:0:0:.:145,0:4:0
chr3 66687787 . T C . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,3:0.333:1:2:0.333:193,100:1:4 0/0:6,0:0.00:0:0:.:222,0:3:3
chr3 97852058 rs62269700 A G . alt_allele_in_normal;germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.671;TLOD=6.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,2:0.200:1:1:0.500:269,72:1:6 0/0:34,3:0.069:0:3:1.00:1231,111:12:22
chr3 97965356 rs56350600 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=11.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.600:3:1:0.250:78,155:1:1 0/0:8,0:0.00:0:0:.:318,0:7:1
chr3 98031183 rs72937135 T C . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,4:0.400:2:2:0.500:162,149:2:2 0/0:6,0:0.00:0:0:.:225,0:5:1
chr3 102576786 rs708309 C A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=5.64 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:1:2:0.667:117,70:2:1 0/0:7,0:0.00:0:0:.:263,0:4:3
chr3 105572474 . T C . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.27;TLOD=5.19 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,2:0.182:2:0:1.00:392,76:6:4 0/0:24,0:0.00:0:0:.:907,0:12:12
chr3 108069769 rs9841151 T C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,78:0:0 0/0:4,0:0.00:0:0:.:142,0:4:0
chr3 108855670 . CT C . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.24;RPA=10,9;RU=T;STR;TLOD=4.16 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,9:0.353:4:5:.:619,344:5:10 0/0:18,0:0.00:0:0:.:703,0:9:9
chr3 111851817 rs950528 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=26.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,7:0.700:2:5:0.714:121,267:2:1 0/0:7,0:0.00:0:0:.:281,0:1:6
chr3 113678415 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=22.04 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,8:0.600:6:2:0.250:207,297:2:3 0/0:25,0:0.00:0:0:.:990,0:12:13
chr3 121382204 rs1169 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=18.39 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,6:0.625:4:2:0.333:120,222:2:1 0/0:4,0:0.00:0:0:.:137,0:1:3
chr3 122081659 rs9857709 A G . germline_risk DB;ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=2.11;TLOD=13.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:4,3:0.500:2:1:0.333:0|1:122081659_A_G:149,122:1:3 0/0:7,0:0.00:0:0:.:0|1:122081659_A_G:227,0:4:3
chr3 122081660 rs9857710 A C . germline_risk DB;ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=2.11;TLOD=13.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:4,4:0.500:3:1:0.250:0|1:122081659_A_G:151,158:1:3 0/0:7,0:0.00:0:0:.:0|1:122081659_A_G:245,0:4:3
chr3 124592460 . T A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=10.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,4:0.375:3:1:0.750:230,151:5:1 0/0:10,0:0.00:0:0:.:369,0:5:5
chr3 125367862 rs2922200 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,84:0:0 0/0:4,0:0.00:0:0:.:149,0:3:1
chr3 125444032 rs199701458 T C . alt_allele_in_normal;clustered_events DB;ECNT=4;HCNT=48;MAX_ED=64;MIN_ED=16;NLOD=3.15;TLOD=9.82 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,4:0.250:3:1:0.750:391,155:5:5 0/0:27,1:0.043:1:0:1.00:990,33:18:9
chr3 125444048 rs371014739 C T . alt_allele_in_normal;clustered_events DB;ECNT=4;HCNT=48;MAX_ED=64;MIN_ED=16;NLOD=2.85;TLOD=9.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,3:0.231:2:1:0.333:421,117:5:6 0/0:25,1:0.043:1:0:0.00:901,36:18:7
chr3 125444069 rs373848519 T G . clustered_events;homologous_mapping_event DB;ECNT=4;HCNT=32;MAX_ED=64;MIN_ED=16;NLOD=5.72;TLOD=10.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,3:0.250:2:1:0.667:414,124:6:5 0/0:20,0:0.00:0:0:.:772,0:13:7
chr3 125444096 . C T . clustered_events;homologous_mapping_event ECNT=4;HCNT=48;MAX_ED=64;MIN_ED=16;NLOD=5.12;TLOD=6.47 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,2:0.222:2:0:0.00:346,76:4:5 0/0:18,0:0.00:0:0:.:721,0:10:8
chr3 125465897 rs148578178 G T . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=23;MIN_ED=23;NLOD=2.11;TLOD=11.99 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,5:0.400:0:5:0.00:238,185:4:2 0/0:8,0:0.00:0:0:.:335,0:3:5
chr3 125465920 rs189509527 G T . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=2;MAX_ED=23;MIN_ED=23;NLOD=3.31;TLOD=12.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,8:0.364:0:8:0.00:299,301:5:3 0/0:14,1:0.083:1:0:1.00:565,34:5:9
chr3 127106605 . A C . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=28;MAX_ED=.;MIN_ED=.;NLOD=8.30;TLOD=4.49 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,4:0.114:3:1:0.250:1149,73:15:22 0/0:39,2:0.057:0:2:1.00:1176,21:17:22
chr3 127317076 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.83;TLOD=31.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:17,9:0.346:5:4:0.444:684,358:9:8 0/0:26,0:0.00:0:0:.:1019,0:15:11
chr3 127336904 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=17.76;TLOD=4.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:72,3:0.038:3:0:1.00:2934,113:37:35 0/0:79,0:0.00:0:0:.:3105,0:48:31
chr3 128532446 rs139417205 GCA G . str_contraction;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.30;RPA=8,7;RU=CA;STR;TLOD=5.24 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:41,3:0.079:2:1:.:1431,99:22:19 0/0:51,0:0.00:0:0:.:1795,0:23:28
chr3 129214369 rs73204231 C T . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.43;TLOD=4.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:54,3:0.049:0:3:1.00:2005,120:25:29 0/0:60,4:0.058:1:3:0.750:2145,156:29:31
chr3 129814863 rs9758049 G A . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=3;HCNT=4;MAX_ED=71;MIN_ED=6;NLOD=1.81;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.667:1:1:0.500:0|1:129814863_G_A:76,78:0:2 0/0:6,0:0.00:0:0:.:0|1:129814863_G_A:202,0:2:4
chr3 129814869 rs9758051 G A . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=3;HCNT=4;MAX_ED=71;MIN_ED=6;NLOD=1.51;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.667:1:1:0.500:0|1:129814863_G_A:84,77:0:2 0/0:7,0:0.00:0:0:.:0|1:129814863_G_A:285,0:2:5
chr3 129814934 rs55800015 GC G . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=3;HCNT=3;MAX_ED=71;MIN_ED=6;NLOD=1.81;RPA=2,1;RU=C;STR;TLOD=13.51 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,5:0.800:3:2:.:84,196:0:2 0/0:10,0:0.00:0:0:.:408,0:2:8
chr3 135902158 . G T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,72:0:0 0/0:4,0:0.00:0:0:.:159,0:2:2
chr3 138289330 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=17.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,7:0.357:1:6:0.143:529,266:5:8 0/0:30,0:0.00:0:0:.:1213,0:18:12
chr3 140692486 rs2555707 G T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.667:1:2:0.333:29,111:1:0 0/0:5,0:0.00:0:0:.:202,0:1:4
chr3 141538935 rs200819878 G A . alt_allele_in_normal;clustered_events;germline_risk DB;ECNT=5;HCNT=4;MAX_ED=81;MIN_ED=10;NLOD=1.24;TLOD=7.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:24,4:0.130:1:3:0.250:0|1:141538935_G_A:982,136:10:14 0/0:22,2:0.111:1:1:0.500:0|1:141538935_G_A:873,70:4:18
chr3 141538945 rs201812228 T G . alt_allele_in_normal;clustered_events DB;ECNT=5;HCNT=4;MAX_ED=81;MIN_ED=10;NLOD=5.42;TLOD=9.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:22,2:0.143:1:1:0.500:0|1:141538935_G_A:794,80:9:13 0/0:24,1:0.053:1:0:1.00:0|1:141538935_G_A:834,41:6:18
chr3 141539008 . T C . alt_allele_in_normal;clustered_events ECNT=5;HCNT=4;MAX_ED=81;MIN_ED=10;NLOD=6.62;TLOD=8.84 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:16,3:0.188:1:2:0.333:0|1:141539008_T_C:607,117:5:11 0/0:25,1:0.043:1:0:1.00:0|1:141539008_T_C:911,41:8:17
chr3 141539010 rs115717823 C T . alt_allele_in_normal;clustered_events DB;ECNT=5;HCNT=4;MAX_ED=81;MIN_ED=10;NLOD=6.62;TLOD=8.84 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:15,2:0.188:0:2:1.00:0|1:141539008_T_C:574,80:5:10 0/0:24,1:0.043:1:0:0.00:0|1:141539008_T_C:853,40:8:16
chr3 141539016 . G A . alt_allele_in_normal;clustered_events ECNT=5;HCNT=4;MAX_ED=81;MIN_ED=10;NLOD=6.02;TLOD=6.51 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:15,2:0.143:0:2:0.00:0|1:141539008_T_C:586,82:5:10 0/0:23,1:0.048:1:0:1.00:0|1:141539008_T_C:902,36:8:15
chr3 141884299 rs68066632 GT G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;RPA=6,5;RU=T;STR;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,3:0.333:1:2:.:161,114:3:1 0/0:4,0:0.00:0:0:.:133,0:1:3
chr3 141934551 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.52;TLOD=13.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,6:0.267:2:4:0.333:640,244:12:4 0/0:22,0:0.00:0:0:.:851,0:16:6
chr3 142746138 . T C . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.07;TLOD=4.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,2:0.125:0:2:0.00:559,56:3:11 0/0:19,0:0.00:0:0:.:715,0:9:10
chr3 147121629 rs142316820 ATC A . str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.59;RPA=9,8;RU=TC;STR;TLOD=4.26 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,2:0.400:1:1:.:196,78:3:3 0/0:12,0:0.00:0:0:.:437,0:8:4
chr3 148930096 rs34300334 T A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.79;TLOD=8.21 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:32,76:0:1 0/0:6,0:0.00:0:0:.:216,0:3:3
chr3 149683127 . T C . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.22;TLOD=4.96 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:17,2:0.143:0:2:0.00:659,65:10:7 0/0:28,0:0.00:0:0:.:1023,0:14:14
chr3 152873705 rs111253884 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=5.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.667:0,85:0:0 0/0:4,0:0.00:0:0:.:159,0:4:0
chr3 167759357 . T C . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:1:1:0.500:82,83:1:1 0/0:5,0:0.00:0:0:.:196,0:1:4
chr3 169501456 . A G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.26;TLOD=13.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,4:0.364:1:3:0.750:289,150:4:4 0/0:13,0:0.00:0:0:.:427,0:7:6
chr3 170584064 rs35192046 A C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=12.04 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.600:1:2:0.667:71,117:0:2 0/0:4,0:0.00:0:0:.:143,0:2:2
chr3 179305626 rs79000506 G A . germline_risk DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=7.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:42,79:1:0 0/0:5,0:0.00:0:0:.:196,0:3:2
chr3 180490489 rs9883100 T C . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=30;MIN_ED=30;NLOD=1.51;TLOD=10.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.600:2:1:0.667:75,106:2:0 0/0:6,0:0.00:0:0:.:234,0:2:4
chr3 180490519 rs9883116 T C . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=30;MIN_ED=30;NLOD=1.51;TLOD=14.47 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.667:2:2:0.500:80,143:2:0 0/0:6,0:0.00:0:0:.:234,0:3:3
chr3 183773929 . C A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=4.63 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,1:0.095:1:0:0.00:912,20:10:14 0/0:26,0:0.00:0:0:.:938,0:13:13
chr3 183778161 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=22.53;TLOD=4.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:77,3:0.033:2:1:0.667:3022,115:42:35 0/0:97,1:0.00:1:0:1.00:3811,19:47:50
chr3 185332587 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.22;TLOD=21.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:12,6:0.353:1:5:0.833:497,235:4:8 0/0:26,0:0.00:0:0:.:1057,0:10:16
chr3 186267095 rs1530640 T A . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=1;MAX_ED=4;MIN_ED=4;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0|1:186267095_T_A:0,73:0:0 0/0:4,0:0.00:0:0:.:0|1:186267095_T_A:134,0:4:0
chr3 186267099 rs138435202 T A . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=1;MAX_ED=4;MIN_ED=4;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0|1:186267095_T_A:0,74:0:0 0/0:4,0:0.00:0:0:.:0|1:186267095_T_A:115,0:4:0
chr3 192444951 . G A . PASS ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=40.77 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,17:0.308:9:8:0.529:1266,641:13:22 0/0:37,0:0.00:0:0:.:1352,0:22:15
chr3 193080955 . C T . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=10.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,3:0.429:2:1:0.333:137,113:3:1 0/0:6,0:0.00:0:0:.:246,0:2:4
chr3 193332420 rs145894722 C CTGTG . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;RPA=2,4;RU=TG;STR;TLOD=15.92 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.571:2:2:.:117,164:0:3 0/0:5,0:0.00:0:0:.:191,0:3:2
chr3 193383973 rs10804957 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=11.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:2:1:0.333:110,125:0:3 0/0:6,0:0.00:0:0:.:221,0:3:3
chr3 195347129 . G A . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=10.91;TLOD=4.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:77,6:0.045:2:4:0.333:2940,238:45:32 0/0:69,3:0.031:3:0:1.00:2678,114:37:32
chr3 195510912 rs375349481 T A . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=10;MAX_ED=.;MIN_ED=.;NLOD=28.87;TLOD=6.07 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:246,12:0.035:6:6:0.500:7730,365:128:118 0/0:262,20:0.066:12:8:0.600:8185,556:123:139
chr3 195513769 rs200578094 A G . alt_allele_in_normal;clustered_events DB;ECNT=9;HCNT=9;MAX_ED=84;MIN_ED=3;NLOD=6.98;TLOD=24.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:188,14:0.066:4:10:0.714:5484,534:100:88 0/0:244,22:0.078:7:15:0.682:7047,672:126:118
chr3 195513772 . G A . alt_allele_in_normal;clustered_events ECNT=9;HCNT=3;MAX_ED=84;MIN_ED=3;NLOD=22.07;TLOD=22.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:186,12:0.051:4:8:0.333:0|1:195513772_G_A:7230,450:96:90 0/0:252,14:0.040:6:8:0.429:0|1:195513772_G_A:9696,523:126:126
chr3 195513781 . T C . alt_allele_in_normal;clustered_events ECNT=9;HCNT=5;MAX_ED=84;MIN_ED=3;NLOD=14.29;TLOD=29.54 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:177,16:0.081:7:9:0.438:5744,542:90:87 0/0:238,16:0.052:6:10:0.375:7542,530:119:119
chr3 195513782 . C T . alt_allele_in_normal;clustered_events ECNT=9;HCNT=3;MAX_ED=84;MIN_ED=3;NLOD=22.39;TLOD=25.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:182,12:0.059:4:8:0.667:0|1:195513772_G_A:5621,477:94:88 0/0:242,13:0.038:6:7:0.538:0|1:195513772_G_A:7362,475:121:121
chr3 195513794 . G C . alt_allele_in_normal;clustered_events ECNT=9;HCNT=3;MAX_ED=84;MIN_ED=3;NLOD=17.88;TLOD=22.63 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:164,11:0.056:4:7:0.364:0|1:195513772_G_A:6099,436:84:80 0/0:236,13:0.040:6:7:0.462:0|1:195513772_G_A:9057,478:122:114
chr3 195513827 . G T . alt_allele_in_normal;clustered_events ECNT=9;HCNT=3;MAX_ED=84;MIN_ED=3;NLOD=6.33;TLOD=30.09 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:137,13:0.084:4:9:0.308:0|1:195513772_G_A:4592,500:64:73 0/0:211,13:0.049:7:6:0.538:0|1:195513772_G_A:7463,466:111:100
chr3 195513831 rs200208054 A G . alt_allele_in_normal;clustered_events DB;ECNT=9;HCNT=3;MAX_ED=84;MIN_ED=3;NLOD=10.23;TLOD=26.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:138,10:0.077:3:7:0.700:0|1:195513772_G_A:4605,392:64:74 0/0:213,11:0.044:5:6:0.545:0|1:195513772_G_A:7072,422:111:102
chr3 195513845 . GCAT G . alt_allele_in_normal;clustered_events ECNT=9;HCNT=3;MAX_ED=84;MIN_ED=3;NLOD=39.32;TLOD=7.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:127,4:0.028:2:2:.:0|1:195513772_G_A:4423,153:58:69 0/0:213,5:5.464e-03:2:3:.:0|1:195513772_G_A:7653,188:110:103
chr3 195513853 . T G . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=9;HCNT=3;MAX_ED=84;MIN_ED=3;NLOD=42.38;TLOD=4.71 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:110,3:0.019:1:2:0.333:0|1:195513772_G_A:3659,110:48:62 0/0:215,3:0.00:1:2:0.333:0|1:195513772_G_A:7105,106:112:103
chr3 195515113 rs71321849 A G . alt_allele_in_normal DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=31.28;TLOD=6.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:119,9:0.056:1:8:0.889:3774,219:58:61 0/0:113,3:9.346e-03:1:2:0.667:3607,62:64:49
chr3 195664994 . T C . alt_allele_in_normal ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=4.67;TLOD=7.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:29,4:0.148:1:3:0.250:1097,132:19:10 0/0:31,1:0.038:1:0:1.00:1104,27:15:16
chr3 195690365 . A T . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=23;MAX_ED=.;MIN_ED=.;NLOD=7.87;TLOD=5.51 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:22,4:0.100:2:2:0.500:827,159:8:14 0/0:45,2:0.049:1:1:0.500:1646,77:22:23
chr3 195698388 . G T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.22;TLOD=4.06 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,3:0.120:3:0:1.00:1021,107:12:15 0/0:32,0:0.00:0:0:.:1192,0:15:17
chr3 195955099 rs142849558 CCTG C . str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.19;RPA=5,4;RU=CTG;STR;TLOD=6.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:28,2:0.087:0:2:.:1101,84:13:15 0/0:28,0:0.00:0:0:.:1078,0:15:13
chr3 197348473 rs4857511 T C . t_lod_fstar DB;ECNT=1;HCNT=32;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=4.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,4:0.083:4:0:1.00:985,152:19:8 0/0:25,0:0.00:0:0:.:832,0:14:11
chr4 60303 rs3864127 G A . alt_allele_in_normal DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.11;TLOD=7.46 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:71,4:0.050:1:3:0.250:2879,149:32:39 0/0:108,5:0.036:4:1:0.800:4314,152:52:56
chr4 85526 rs61792225 C T . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=11.94 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.750:3:0:0.00:41,115:0:1 0/0:5,0:0.00:0:0:.:189,0:1:4
chr4 675712 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.03;TLOD=67.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:33,23:0.432:8:15:0.348:1143,888:26:7 0/0:45,0:0.00:0:0:.:1593,0:25:20
chr4 871765 . A ATG . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.909;RPA=5,6;RU=TG;STR;TLOD=6.06 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:.:38,75:1:0 0/0:3,0:0.00:0:0:.:111,0:1:2
chr4 1019054 rs145808953 CCA C . alt_allele_in_normal;germline_risk;str_contraction DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.672;RPA=10,9;RU=CA;STR;TLOD=8.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:73,15:0.141:7:8:.:2910,576:45:28 0/0:69,12:0.129:10:2:.:2664,475:33:36
chr4 1231601 rs28688768 A C . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.84;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:53,8:0.132:3:5:0.625:1657,122:16:37 0/0:50,4:0.067:2:2:0.500:1638,67:27:23
chr4 1980668 . C A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.03;TLOD=4.71 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,2:0.111:0:2:1.00:650,72:6:14 0/0:32,0:0.00:0:0:.:1075,0:16:16
chr4 2091306 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=14.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,6:0.400:0:6:1.00:333,243:5:3 0/0:13,0:0.00:0:0:.:538,0:8:5
chr4 3367258 rs35494582 G C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.98 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:1:2:0.333:0,113:0:0 0/0:4,0:0.00:0:0:.:160,0:1:3
chr4 3574333 rs67467766 G A . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar DB;ECNT=3;HCNT=4;MAX_ED=72;MIN_ED=47;NLOD=0.903;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,76:0:0 0/0:4,0:0.00:0:0:.:144,0:2:2
chr4 3574380 rs66535045 G A . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar DB;ECNT=3;HCNT=4;MAX_ED=72;MIN_ED=47;NLOD=0.602;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,79:0:0 0/0:4,0:0.00:0:0:.:145,0:2:2
chr4 3574405 rs67067776 A G . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar DB;ECNT=3;HCNT=4;MAX_ED=72;MIN_ED=47;NLOD=0.602;TLOD=4.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,76:0:0 0/0:2,0:0.00:0:0:.:66,0:1:1
chr4 4128553 rs372351897 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=4.68 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,2:0.222:2:0:1.00:333,71:6:2 0/0:5,0:0.00:0:0:.:197,0:2:3
chr4 4787282 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=17.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,9:0.417:2:7:0.778:324,312:3:5 0/0:29,0:0.00:0:0:.:1123,0:18:11
chr4 7941498 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=15.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:26,5:0.227:3:2:0.400:1011,187:11:15 0/0:36,0:0.00:0:0:.:1421,0:19:17
chr4 8548332 rs7668839 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.667:0:3:1.00:77,111:2:0 0/0:5,0:0.00:0:0:.:188,0:1:4
chr4 8616820 rs3775881 G C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=12.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:3:1:0.750:0,154:0:0 0/0:4,0:0.00:0:0:.:144,0:1:3
chr4 9784193 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=28.55;TLOD=4.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:93,3:0.023:2:1:0.667:3785,113:49:44 0/0:112,0:0.00:0:0:.:4451,0:59:53
chr4 18345490 . C A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,71:0:0 0/0:4,0:0.00:0:0:.:164,0:1:3
chr4 30724987 . T C . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.95;TLOD=4.03 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:50,3:0.044:0:3:0.00:1906,95:20:30 0/0:50,1:0.00:0:1:0.00:1732,8:26:24
chr4 38387875 . A AGAAG . clustered_events;germline_risk ECNT=2;HCNT=2;MAX_ED=25;MIN_ED=25;NLOD=1.21;RPA=6,7;RU=GAAG;STR;TLOD=12.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.750:2:1:.:0|1:38387875_A_AGAAG:41,123:1:0 0/0:6,0:0.00:0:0:.:0|1:38387875_A_AGAAG:230,0:3:3
chr4 38387900 rs6812640 C G . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=25;MIN_ED=25;NLOD=1.51;TLOD=12.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.750:2:1:0.333:0|1:38387875_A_AGAAG:42,126:1:0 0/0:6,0:0.00:0:0:.:0|1:38387875_A_AGAAG:208,0:3:3
chr4 39062061 . T TACCACCACCACCACC . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.23;RPA=8,13;RU=ACC;STR;TLOD=15.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,3:0.500:2:1:.:197,116:2:3 0/0:5,0:0.00:0:0:.:189,0:4:1
chr4 39062189 rs2566127 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,2:0.333:1:1:0.500:229,81:3:3 0/0:5,0:0.00:0:0:.:180,0:4:1
chr4 39868529 . G A . clustered_events ECNT=2;HCNT=2;MAX_ED=18;MIN_ED=18;NLOD=8.43;TLOD=21.96 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,10:0.226:8:2:0.800:1065,375:16:11 0/0:36,0:0.00:0:0:.:1436,0:19:17
chr4 39868547 . G A . clustered_events ECNT=2;HCNT=2;MAX_ED=18;MIN_ED=18;NLOD=8.13;TLOD=21.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,10:0.241:8:2:0.800:1009,373:16:11 0/0:34,0:0.00:0:0:.:1345,0:18:16
chr4 39870471 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.27;TLOD=11.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,5:0.500:4:1:0.800:125,209:3:0 0/0:15,0:0.00:0:0:.:567,0:6:9
chr4 39974888 . G C . clustered_events ECNT=2;HCNT=1;MAX_ED=5;MIN_ED=5;NLOD=5.42;TLOD=6.51 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:13,2:0.143:1:1:0.500:0|1:39974888_G_C:530,74:9:4 0/0:23,0:0.00:0:0:.:0|1:39974888_G_C:897,0:12:11
chr4 39974893 . T TGAG . clustered_events;germline_risk ECNT=2;HCNT=1;MAX_ED=5;MIN_ED=5;NLOD=5.43;RPA=1,2;RU=GAG;STR;TLOD=6.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:16,2:0.125:1:1:.:0|1:39974888_G_C:610,77:11:5 0/0:23,0:0.00:0:0:.:0|1:39974888_G_C:851,0:12:11
chr4 39975008 rs147770089 C G . alt_allele_in_normal;clustered_events;germline_risk DB;ECNT=5;HCNT=2;MAX_ED=36;MIN_ED=4;NLOD=1.82;TLOD=16.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:27,5:0.192:4:1:0.200:0|1:39975008_C_G:1095,186:14:13 0/0:24,1:0.048:1:0:0.00:0|1:39975008_C_G:963,41:12:12
chr4 39975012 rs199561822 C T . alt_allele_in_normal;clustered_events;germline_risk DB;ECNT=5;HCNT=2;MAX_ED=36;MIN_ED=4;NLOD=1.82;TLOD=16.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:28,5:0.192:4:1:0.200:0|1:39975008_C_G:1018,196:14:14 0/0:25,1:0.048:1:0:0.00:0|1:39975008_C_G:916,40:13:12
chr4 39975040 . T C . alt_allele_in_normal;clustered_events;germline_risk ECNT=5;HCNT=2;MAX_ED=36;MIN_ED=4;NLOD=2.12;TLOD=9.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:29,3:0.120:3:0:1.00:0|1:39975040_T_C:1057,116:14:15 0/0:24,1:0.045:1:0:1.00:0|1:39975040_T_C:853,41:11:13
chr4 39975041 . G A . alt_allele_in_normal;clustered_events;germline_risk ECNT=5;HCNT=2;MAX_ED=36;MIN_ED=4;NLOD=2.12;TLOD=9.46 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:27,3:0.115:3:0:1.00:0|1:39975040_T_C:1041,110:13:14 0/0:25,1:0.045:1:0:1.00:0|1:39975040_T_C:994,37:11:14
chr4 39975044 . C T . alt_allele_in_normal;clustered_events;germline_risk ECNT=5;HCNT=2;MAX_ED=36;MIN_ED=4;NLOD=2.12;TLOD=9.63 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:26,2:0.130:2:0:0.00:0|1:39975040_T_C:1014,70:12:14 0/0:24,1:0.045:1:0:0.00:0|1:39975040_T_C:960,37:12:12
chr4 41648829 . C T . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.84;TLOD=40.76 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:38,17:0.302:7:10:0.588:1526,606:12:26 0/0:59,0:0.00:0:0:.:2344,0:40:19
chr4 41937619 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=18.61;TLOD=4.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:78,3:0.031:3:0:1.00:2954,116:40:38 0/0:80,0:0.00:0:0:.:2949,0:43:37
chr4 42487704 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=4.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:28,3:0.091:2:1:0.333:1082,102:12:16 0/0:31,0:0.00:0:0:.:1115,0:17:14
chr4 43448594 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=11.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.600:0:4:0.00:127,151:0:3 0/0:10,0:0.00:0:0:.:403,0:2:8
chr4 49211501 rs183008960 A G . alt_allele_in_normal;germline_risk DB;ECNT=1;HCNT=30;MAX_ED=.;MIN_ED=.;NLOD=0.640;TLOD=9.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,5:0.300:5:0:0.00:325,208:5:4 0/0:24,2:0.059:2:0:0.00:876,80:10:14
chr4 49239137 . G C . PASS ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=6.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,5:0.231:3:2:0.600:494,175:7:6 0/0:15,0:0.00:0:0:.:525,0:6:9
chr4 49243449 rs9291356 T C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:0:2:0.00:75,70:0:2 0/0:5,0:0.00:0:0:.:176,0:3:2
chr4 49247477 rs11946314 G A . alt_allele_in_normal;germline_risk DB;ECNT=1;HCNT=9;MAX_ED=.;MIN_ED=.;NLOD=0.792;TLOD=11.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:31,5:0.129:1:4:0.200:1275,182:17:14 0/0:33,2:0.071:0:2:0.00:1305,72:13:20
chr4 49323530 . A G . germline_risk ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,4:0.333:2:2:0.500:199,147:5:0 0/0:4,0:0.00:0:0:.:148,0:2:2
chr4 49560420 . A G . PASS ECNT=1;HCNT=13;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=6.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,3:0.286:0:3:1.00:168,118:3:2 0/0:15,0:0.00:0:0:.:577,0:11:4
chr4 56502616 rs188916399 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:1:2:0.333:126,113:0:3 0/0:4,0:0.00:0:0:.:163,0:3:1
chr4 57179059 rs12331363 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,74:0:0 0/0:4,0:0.00:0:0:.:167,0:2:2
chr4 57302350 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=10.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,3:0.300:0:3:0.00:264,114:6:2 0/0:11,0:0.00:0:0:.:373,0:5:6
chr4 58917728 rs6831215 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,80:0:0 0/0:4,0:0.00:0:0:.:165,0:2:2
chr4 59615615 rs28502245 A G . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=33;MIN_ED=33;NLOD=1.51;TLOD=10.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:2:1:0.333:116,114:0:3 0/0:6,0:0.00:0:0:.:231,0:1:5
chr4 59615648 rs28657427 G A . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=33;MIN_ED=33;NLOD=2.11;TLOD=11.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,3:0.429:2:1:0.667:155,114:1:3 0/0:9,0:0.00:0:0:.:370,0:3:6
chr4 59848776 rs62301198 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,76:0:0 0/0:4,0:0.00:0:0:.:163,0:0:4
chr4 63682989 . C A . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=10.24 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,3:0.333:0:3:1.00:362,113:8:1 0/0:16,0:0.00:0:0:.:645,0:8:8
chr4 65155509 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=9.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:17,3:0.214:0:3:1.00:686,113:10:7 0/0:29,0:0.00:0:0:.:1192,0:16:13
chr4 68442862 . T C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=17.92 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,7:0.556:3:4:0.429:156,265:3:1 0/0:18,0:0.00:0:0:.:650,0:6:12
chr4 70066226 . T C . alt_allele_in_normal;clustered_events ECNT=2;HCNT=1;MAX_ED=3;MIN_ED=3;NLOD=8.16;TLOD=8.47 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:71,5:0.056:3:2:0.600:0|1:70066226_T_C:2688,176:43:28 0/0:72,3:0.035:1:2:0.333:0|1:70066226_T_C:2589,104:36:36
chr4 70066229 . T C . alt_allele_in_normal;clustered_events ECNT=2;HCNT=1;MAX_ED=3;MIN_ED=3;NLOD=8.16;TLOD=11.78 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:73,5:0.073:3:2:0.600:0|1:70066226_T_C:2692,197:44:29 0/0:73,3:0.035:1:2:0.333:0|1:70066226_T_C:2571,119:37:36
chr4 70897507 rs800756 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=8.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.667:0:3:0.00:38,122:0:1 0/0:4,0:0.00:0:0:.:151,0:1:3
chr4 74531806 rs62314280 G T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=17.21 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,6:1.00:4:2:0.667:0,229:0:0 0/0:7,0:0.00:0:0:.:275,0:1:6
chr4 77589959 rs7691621 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=6.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:1:1:0.500:79,72:0:2 0/0:7,0:0.00:0:0:.:277,0:5:2
chr4 77957958 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=24.01 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,8:0.348:5:3:0.375:774,284:10:9 0/0:17,0:0.00:0:0:.:691,0:5:12
chr4 77996637 . TTCC T . str_contraction;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.02;RPA=6,5;RU=TCC;STR;TLOD=5.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:32,2:0.063:1:1:.:1229,81:14:18 0/0:32,0:0.00:0:0:.:1168,0:10:22
chr4 78987284 rs4859516 A C . germline_risk DB;ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=1.20;TLOD=15.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:4,4:0.500:2:2:0.500:0|1:78987284_A_C:146,167:1:3 0/0:5,0:0.00:0:0:.:0|1:78987284_A_C:178,0:2:3
chr4 78987285 rs4859906 C A . germline_risk DB;ECNT=2;HCNT=1;MAX_ED=1;MIN_ED=1;NLOD=1.20;TLOD=15.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:4,4:0.500:2:2:0.500:0|1:78987284_A_C:143,159:1:3 0/0:5,0:0.00:0:0:.:0|1:78987284_A_C:167,0:2:3
chr4 79792163 . GCAC G . str_contraction;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.90;RPA=8,7;RU=CAC;STR;TLOD=4.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:33,4:0.069:4:0:.:1320,159:18:15 0/0:40,0:0.00:0:0:.:1627,0:22:18
chr4 83411046 rs58876238 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:36,82:0:1 0/0:5,0:0.00:0:0:.:180,0:5:0
chr4 85417049 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.69;TLOD=57.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,21:0.533:10:11:0.524:688,792:10:9 0/0:53,0:0.00:0:0:.:1865,0:27:26
chr4 88236673 rs202101936 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=6.24 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,3:0.286:3:0:0.00:206,110:1:4 0/0:17,0:0.00:0:0:.:634,0:10:7
chr4 89080200 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.23;TLOD=5.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,3:0.083:1:2:0.333:816,114:10:13 0/0:38,0:0.00:0:0:.:1294,0:14:24
chr4 102346560 rs201154872 TCA T . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=4;MIN_ED=4;NLOD=0.599;TLOD=9.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.667:3:1:.:0|1:102346560_TCA_T:114,156:1:2 0/0:3,0:0.00:0:0:.:0|1:102346560_TCA_T:111,0:2:1
chr4 102346564 rs201279917 T A . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=4;MIN_ED=4;NLOD=0.602;TLOD=9.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.667:3:1:0.750:0|1:102346560_TCA_T:116,126:1:2 0/0:3,0:0.00:0:0:.:0|1:102346560_TCA_T:118,0:2:1
chr4 104037888 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=17.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,6:0.500:4:2:0.667:263,218:2:5 0/0:13,0:0.00:0:0:.:507,0:5:8
chr4 108654167 rs13123947 C G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=16.47 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.800:2:2:0.500:41,158:0:1 0/0:4,0:0.00:0:0:.:160,0:3:1
chr4 110222983 . C T . PASS ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=26.49;TLOD=78.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:64,32:0.362:21:11:0.344:2367,1122:24:40 0/0:111,0:0.00:0:0:.:4078,0:60:51
chr4 119553021 rs183066824 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,76:0:0 0/0:4,0:0.00:0:0:.:164,0:2:2
chr4 119659419 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=4.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,3:0.080:0:3:0.00:1109,108:13:14 0/0:39,0:0.00:0:0:.:1527,0:24:15
chr4 120376030 rs28408407 C G . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=85;MIN_ED=85;NLOD=1.20;TLOD=7.27 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.500:0:3:1.00:77,112:2:0 0/0:4,0:0.00:0:0:.:153,0:0:4
chr4 120376115 rs28441656 C G . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=85;MIN_ED=85;NLOD=1.81;TLOD=15.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,6:0.571:2:4:0.667:165,233:4:0 0/0:9,0:0.00:0:0:.:338,0:3:6
chr4 123159375 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=11.47 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,4:0.190:3:1:0.750:972,140:10:14 0/0:25,0:0.00:0:0:.:978,0:11:14
chr4 123161083 . AG A . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.11;TLOD=16.76 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,7:0.318:1:6:.:763,266:11:9 0/0:20,0:0.00:0:0:.:698,0:12:8
chr4 129880706 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.27;TLOD=22.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,6:0.400:3:3:0.500:395,241:3:7 0/0:14,0:0.00:0:0:.:508,0:9:5
chr4 133769865 rs1597114 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=8.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,74:0:0 0/0:4,0:0.00:0:0:.:138,0:2:2
chr4 141563462 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.52;TLOD=4.94 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,2:0.065:2:0:1.00:1377,72:15:20 0/0:31,0:0.00:0:0:.:1197,0:14:17
chr4 143003139 . C G . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=6.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,2:0.200:1:1:0.500:450,85:4:7 0/0:12,0:0.00:0:0:.:466,0:8:4
chr4 158441221 . C T . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar ECNT=5;HCNT=12;MAX_ED=122;MIN_ED=34;NLOD=0.602;TLOD=5.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,75:0:0 0/0:2,0:0.00:0:0:.:80,0:1:1
chr4 158441255 . G A . clustered_events;germline_risk;homologous_mapping_event ECNT=5;HCNT=12;MAX_ED=122;MIN_ED=34;NLOD=0.602;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:0|1:158441255_G_A:36,79:1:0 0/0:4,0:0.00:0:0:.:0|1:158441255_G_A:150,0:2:2
chr4 158441274 . C A . clustered_events;germline_risk;homologous_mapping_event ECNT=5;HCNT=12;MAX_ED=122;MIN_ED=34;NLOD=0.602;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:0|1:158441255_G_A:41,80:1:0 0/0:4,0:0.00:0:0:.:0|1:158441255_G_A:146,0:2:2
chr4 158441315 . G A . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar ECNT=5;HCNT=18;MAX_ED=122;MIN_ED=34;NLOD=0.903;TLOD=4.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:36,80:1:0 0/0:4,0:0.00:0:0:.:143,0:2:2
chr4 158441343 . G A . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar ECNT=5;HCNT=18;MAX_ED=122;MIN_ED=34;NLOD=0.903;TLOD=4.72 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:36,77:1:0 0/0:4,0:0.00:0:0:.:154,0:3:1
chr4 162086607 rs13105180 G T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,77:0:0 0/0:5,0:0.00:0:0:.:202,0:3:2
chr4 166585445 rs4691212 G T . PASS DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.71;TLOD=10.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,3:0.429:2:1:0.667:166,109:4:0 0/0:9,0:0.00:0:0:.:359,0:5:4
chr4 172306190 rs13132804 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.85 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.667:1:1:0.500:75,78:2:0 0/0:4,0:0.00:0:0:.:128,0:4:0
chr4 177087244 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.52;TLOD=15.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,6:0.400:1:5:0.833:247,252:3:3 0/0:21,0:0.00:0:0:.:854,0:9:12
chr4 184182300 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.06;TLOD=53.22 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,17:0.333:9:8:0.471:1438,664:16:24 0/0:78,0:0.00:0:0:.:2834,0:40:38
chr4 189659934 . G T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=4.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,2:0.200:1:1:0.500:329,60:3:5 0/0:8,0:0.00:0:0:.:320,0:5:3
chr4 190563295 rs67306916 C T . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=6.82 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:0:2:1.00:42,78:1:0 0/0:4,0:0.00:0:0:.:148,0:3:1
chr4 190906096 rs78779376 G C . t_lod_fstar DB;ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=4.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,2:0.095:1:1:0.500:986,69:11:13 0/0:28,0:0.00:0:0:.:1101,0:14:14
chr5 251625 . G C . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=6;HCNT=32;MAX_ED=55;MIN_ED=3;NLOD=28.61;TLOD=4.61 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:145,5:0.017:3:2:0.600:0|1:251625_G_C:5904,205:66:79 0/0:145,3:9.091e-03:3:0:1.00:0|1:251625_G_C:5665,123:59:86
chr5 251628 . A G . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=6;HCNT=32;MAX_ED=55;MIN_ED=3;NLOD=29.21;TLOD=4.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:145,5:0.017:3:2:0.400:0|1:251625_G_C:5274,177:65:80 0/0:142,3:8.929e-03:3:0:0.00:0|1:251625_G_C:4957,102:57:85
chr5 251667 . AT A . alt_allele_in_normal;clustered_events ECNT=6;HCNT=32;MAX_ED=55;MIN_ED=3;NLOD=25.89;RPA=4,3;RU=T;STR;TLOD=7.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:124,5:0.029:3:2:.:0|1:251667_AT_A:4607,196:59:65 0/0:120,3:9.901e-03:3:0:.:0|1:251667_AT_A:4273,111:50:70
chr5 251672 . C A . alt_allele_in_normal;clustered_events ECNT=6;HCNT=32;MAX_ED=55;MIN_ED=3;NLOD=26.80;TLOD=7.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:125,5:0.029:3:2:0.400:0|1:251667_AT_A:5045,182:59:66 0/0:122,3:9.615e-03:3:0:0.00:0|1:251667_AT_A:4812,108:50:72
chr5 251674 . T G . alt_allele_in_normal;clustered_events ECNT=6;HCNT=32;MAX_ED=55;MIN_ED=3;NLOD=18.75;TLOD=7.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:122,5:0.029:3:2:0.600:0|1:251667_AT_A:4727,188:58:64 0/0:120,3:0.029:3:0:1.00:0|1:251667_AT_A:4614,125:49:71
chr5 251680 . G T . alt_allele_in_normal;clustered_events ECNT=6;HCNT=32;MAX_ED=55;MIN_ED=3;NLOD=17.32;TLOD=7.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:123,5:0.029:3:2:0.600:0|1:251667_AT_A:4849,194:59:64 0/0:115,6:0.030:5:1:0.833:0|1:251667_AT_A:4472,218:45:70
chr5 796064 . T TCAGTACTGTGTGCCCATTTCC . alt_allele_in_normal ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=40.16;TLOD=12.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:196,40:8.000e-03:1:0:.:5975,25:75:82 0/0:285,35:5.525e-03:0:1:.:8311,26:103:123
chr5 840704 rs139300052 G A . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=9;MAX_ED=8;MIN_ED=8;NLOD=26.15;TLOD=11.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:133,7:0.045:6:1:0.857:0|1:840704_G_A:5308,256:55:78 0/0:145,6:0.026:4:2:0.667:0|1:840704_G_A:5523,228:67:78
chr5 840712 rs148433225 C G . alt_allele_in_normal;clustered_events DB;ECNT=2;HCNT=9;MAX_ED=8;MIN_ED=8;NLOD=25.74;TLOD=11.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:132,5:0.046:4:1:0.200:0|1:840704_G_A:5276,207:54:78 0/0:140,7:0.034:5:2:0.286:0|1:840704_G_A:5492,240:63:77
chr5 865506 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=5.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,4:0.105:2:2:0.500:746,148:13:6 0/0:21,0:0.00:0:0:.:808,0:15:6
chr5 878427 . C G . alt_allele_in_normal;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.16;TLOD=5.36 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:49,3:0.049:2:1:0.333:2035,112:22:27 0/0:46,1:0.050:1:0:0.00:1867,39:23:23
chr5 1466985 . G A . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=19.56;TLOD=87.39 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,28:0.490:14:14:0.500:1334,1047:15:20 0/0:83,0:0.00:0:0:.:3051,0:41:42
chr5 4420460 rs371025462 TTG T . germline_risk;str_contraction;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;RPA=6,5;RU=TG;STR;TLOD=4.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:26,2:0.091:2:0:.:949,76:14:12 0/0:23,0:0.00:0:0:.:826,0:12:11
chr5 5306925 rs75483865 G C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=12.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,3:0.750:2:1:0.667:41,122:1:0 0/0:4,0:0.00:0:0:.:152,0:1:3
chr5 6602347 . AAGTAAAAATTCACTTAGCCTGAG A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.05;TLOD=14.87 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,4:0.364:3:1:.:294,150:3:5 0/0:18,0:0.00:0:0:.:612,0:8:10
chr5 6612027 rs6884320 T C . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=11.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,4:0.375:3:1:0.750:265,165:0:7 0/0:6,0:0.00:0:0:.:206,0:4:2
chr5 14545832 rs7448492 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,2:0.333:1:1:0.500:187,82:2:3 0/0:4,0:0.00:0:0:.:147,0:2:2
chr5 17491659 rs2459842 A G . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=6.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.500:3:0:0.00:70,112:1:1 0/0:5,0:0.00:0:0:.:176,0:3:2
chr5 21481774 rs60449939 T C . alt_allele_in_normal DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=8.47;TLOD=41.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:155,21:0.098:11:10:0.524:5655,855:68:87 0/0:194,14:0.055:6:8:0.429:6894,562:98:96
chr5 32114530 . T C . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,84:0:0 0/0:4,0:0.00:0:0:.:149,0:1:3
chr5 34035602 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=15.26 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:30,7:0.167:1:6:0.857:1184,262:14:16 0/0:24,0:0.00:0:0:.:957,0:13:11
chr5 34182899 rs3928064 G T . alt_allele_in_normal;germline_risk DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.06;TLOD=25.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:210,16:0.071:11:5:0.688:8560,622:108:102 0/0:242,30:0.106:16:14:0.533:9625,1137:116:126
chr5 39097708 rs358512 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=8.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.750:2:2:0.500:41,109:1:0 0/0:4,0:0.00:0:0:.:129,0:2:2
chr5 49701519 rs34041280 CTGT C . germline_risk;str_contraction DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;RPA=4,3;RU=TGT;STR;TLOD=8.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:0:2:.:42,54:0:1 0/0:4,0:0.00:0:0:.:156,0:3:1
chr5 56817325 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=5.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,3:0.167:2:1:0.333:502,106:8:5 0/0:14,0:0.00:0:0:.:564,0:4:10
chr5 59955590 rs79179835 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=10.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:1:2:0.333:120,107:2:1 0/0:6,0:0.00:0:0:.:227,0:4:2
chr5 61832498 rs199992626 G T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=12.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:12,5:0.364:4:1:0.800:478,191:9:3 0/0:17,0:0.00:0:0:.:635,0:10:7
chr5 64919976 . G A . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=19.56;TLOD=65.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:41,30:0.345:16:14:0.533:1482,1120:20:21 0/0:84,0:0.00:0:0:.:2973,0:48:36
chr5 65156667 rs77705568 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=10.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.600:1:2:0.333:80,102:1:1 0/0:7,0:0.00:0:0:.:257,0:0:7
chr5 65799395 rs13171144 C T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,80:0:0 0/0:4,0:0.00:0:0:.:159,0:4:0
chr5 66124778 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.79;TLOD=26.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:28,8:0.276:3:5:0.625:1123,310:12:16 0/0:44,0:0.00:0:0:.:1694,0:27:17
chr5 70798282 rs560394 C T . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:0:2:1.00:42,72:1:0 0/0:5,0:0.00:0:0:.:194,0:3:2
chr5 71490287 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.49;TLOD=5.62 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:43,4:0.054:2:2:0.500:1691,160:17:26 0/0:46,0:0.00:0:0:.:1775,0:25:21
chr5 72634918 rs2973925 T C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.857;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,77:0:0 0/0:4,0:0.00:0:0:.:128,0:1:3
chr5 73178550 rs2973528 T G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=12.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:3:0:1.00:0,115:0:0 0/0:8,0:0.00:0:0:.:294,0:5:3
chr5 73190174 rs34729826 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=22.42 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,7:0.545:3:4:0.571:234,277:5:2 0/0:6,0:0.00:0:0:.:212,0:3:3
chr5 73339193 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.23;TLOD=13.70 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,4:0.333:2:2:0.500:299,156:5:3 0/0:22,0:0.00:0:0:.:830,0:12:10
chr5 74517942 rs78866735 A T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,71:0:0 0/0:4,0:0.00:0:0:.:146,0:3:1
chr5 78329756 rs143710887 A AAAAAC . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;RPA=3,4;RU=AAAAC;STR;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:.:0,74:0:0 0/0:4,0:0.00:0:0:.:156,0:0:4
chr5 79086618 . C G . germline_risk ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=6.39 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.400:2:0:0.00:153,69:3:1 0/0:8,0:0.00:0:0:.:297,0:4:4
chr5 80628473 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.02;TLOD=5.64 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,2:0.125:1:1:0.500:771,73:8:11 0/0:23,0:0.00:0:0:.:928,0:14:9
chr5 82836377 . A G . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=33.14 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:21,12:0.375:7:5:0.417:827,494:10:11 0/0:35,0:0.00:0:0:.:1316,0:23:12
chr5 82969283 . G T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.94;TLOD=89.07 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:28,26:0.545:8:18:0.308:1104,1000:16:12 0/0:54,0:0.00:0:0:.:2160,0:22:32
chr5 84143380 rs10067190 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=8.98 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.333:0,122:0:0 0/0:4,0:0.00:0:0:.:161,0:0:4
chr5 87517530 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=18.94 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,7:0.455:3:4:0.571:284,274:4:3 0/0:30,0:0.00:0:0:.:1202,0:19:11
chr5 90445829 rs35858094 T TTC . alt_allele_in_normal;germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.05;TLOD=5.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,14:0.909:8:6:.:72,548:1:1 0/0:10,2:0.200:1:1:.:366,81:6:4
chr5 91967324 rs4286650 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,5:0.429:0:5:1.00:203,189:3:2 0/0:4,0:0.00:0:0:.:163,0:2:2
chr5 95044280 rs188232015 G A . germline_risk DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=15.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,6:0.500:2:4:0.333:137,237:2:2 0/0:10,0:0.00:0:0:.:361,0:6:4
chr5 95759061 . C G . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=10.54;TLOD=37.94 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,13:0.435:9:4:0.308:629,540:10:6 0/0:45,0:0.00:0:0:.:1783,0:18:27
chr5 96089803 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.43;TLOD=27.87 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,11:0.400:5:6:0.455:669,401:10:6 0/0:33,0:0.00:0:0:.:1318,0:13:20
chr5 98342016 rs10050423 C G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,72:0:0 0/0:4,0:0.00:0:0:.:156,0:1:3
chr5 101811575 . G T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=5.60 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,2:0.133:1:1:0.500:762,72:10:9 0/0:19,0:0.00:0:0:.:766,0:11:8
chr5 105582222 rs113695812 G C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,83:0:0 0/0:5,0:0.00:0:0:.:183,0:0:5
chr5 111494244 . G T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=20.91 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,7:0.429:2:5:0.286:440,261:7:4 0/0:16,0:0.00:0:0:.:637,0:6:10
chr5 114777859 rs2546489 T G . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=36;MIN_ED=36;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,75:0:0 0/0:4,0:0.00:0:0:.:147,0:0:4
chr5 114777895 rs146287965 C T . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=36;MIN_ED=36;NLOD=0.903;TLOD=8.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:3:0:0.00:0,117:0:0 0/0:5,0:0.00:0:0:.:189,0:0:5
chr5 115428216 . T A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.07;TLOD=17.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,5:0.357:1:4:0.200:331,196:2:7 0/0:18,0:0.00:0:0:.:629,0:10:8
chr5 122011651 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=15.19 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,6:0.444:2:4:0.667:281,250:6:1 0/0:12,0:0.00:0:0:.:482,0:7:5
chr5 123979071 rs6878299 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=13.84 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.667:1:3:0.250:41,135:1:1 0/0:4,0:0.00:0:0:.:135,0:0:4
chr5 125906768 rs6898430 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,81:0:0 0/0:4,0:0.00:0:0:.:159,0:4:0
chr5 126253685 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.99;TLOD=4.37 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:36,3:0.067:0:3:0.00:1409,92:19:17 0/0:52,0:0.00:0:0:.:1969,0:19:33
chr5 127872988 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.83;TLOD=38.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,13:0.455:7:6:0.538:546,522:8:6 0/0:33,0:0.00:0:0:.:1318,0:14:19
chr5 130506901 rs111877128 TTG T . germline_risk;str_contraction DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;RPA=2,1;RU=TG;STR;TLOD=8.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:.:39,72:1:0 0/0:7,0:0.00:0:0:.:273,0:4:3
chr5 135693042 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.55;TLOD=32.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,11:0.333:8:3:0.727:881,395:16:7 0/0:68,0:0.00:0:0:.:2508,0:34:34
chr5 136328196 . G T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=38.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,14:0.393:7:7:0.500:914,526:8:16 0/0:41,0:0.00:0:0:.:1615,0:20:21
chr5 137681266 . C T . t_lod_fstar ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=20.17;TLOD=4.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:80,3:0.030:1:2:0.667:2970,112:35:45 0/0:85,0:0.00:0:0:.:3196,0:42:43
chr5 138873627 rs34530489 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.667:0,109:0:0 0/0:4,0:0.00:0:0:.:152,0:1:3
chr5 140052541 . C A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=15.61;TLOD=4.73 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:79,3:0.033:2:1:0.333:3177,115:43:36 0/0:67,0:0.00:0:0:.:2634,0:35:32
chr5 140362165 . T A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.53;TLOD=12.66 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:23,4:0.200:0:4:0.00:869,151:12:11 0/0:32,0:0.00:0:0:.:1213,0:9:23
chr5 140475652 . C T . clustered_events;t_lod_fstar ECNT=2;HCNT=2;MAX_ED=6;MIN_ED=6;NLOD=17.76;TLOD=5.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:57,3:0.038:2:1:0.333:0|1:140475652_C_T:2082,119:29:28 0/0:68,0:0.00:0:0:.:0|1:140475652_C_T:2447,0:32:36
chr5 140475658 . C G . clustered_events;t_lod_fstar ECNT=2;HCNT=2;MAX_ED=6;MIN_ED=6;NLOD=18.06;TLOD=5.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:60,3:0.038:2:1:0.333:0|1:140475652_C_T:2281,125:31:29 0/0:72,0:0.00:0:0:.:0|1:140475652_C_T:2596,0:32:40
chr5 140553116 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.62;TLOD=67.96 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:58,25:0.322:16:9:0.640:2386,1014:30:28 0/0:79,0:0.00:0:0:.:3058,0:26:53
chr5 141847240 rs10062952 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=12.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.750:0:4:1.00:78,161:0:2 0/0:4,0:0.00:0:0:.:148,0:4:0
chr5 147469225 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.72;TLOD=24.70 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:12,9:0.500:3:6:0.667:483,343:3:9 0/0:22,0:0.00:0:0:.:879,0:18:4
chr5 149495253 rs2229562 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=27.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,7:0.636:4:3:0.571:149,281:1:3 0/0:4,0:0.00:0:0:.:139,0:0:4
chr5 149624059 rs181649185 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=9.31 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,4:1.00:1:3:0.750:0,102:0:0 0/0:4,0:0.00:0:0:.:167,0:3:1
chr5 151170505 rs370340219 G A . t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=5.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:19,2:0.133:2:0:1.00:641,75:11:8 0/0:16,0:0.00:0:0:.:552,0:4:12
chr5 152412891 . G T . germline_risk;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,75:0:0 0/0:4,0:0.00:0:0:.:165,0:2:2
chr5 168043961 rs202089633 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=5.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,3:0.231:2:1:0.333:427,116:8:3 0/0:14,0:0.00:0:0:.:508,0:8:6
chr5 168508026 rs11134557 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=8.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,71:0:0 0/0:4,0:0.00:0:0:.:155,0:4:0
chr5 169461704 rs3763049 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.03 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,2:0.286:1:1:0.500:167,79:4:1 0/0:5,0:0.00:0:0:.:159,0:2:3
chr5 169484269 . C G . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.06;TLOD=15.92 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.571:1:3:0.750:116,170:2:1 0/0:7,0:0.00:0:0:.:235,0:4:3
chr5 169916008 rs10063281 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,78:0:0 0/0:5,0:0.00:0:0:.:195,0:0:5
chr5 170224470 . A G . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.44;TLOD=4.53 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:31,2:0.071:0:2:1.00:1126,67:21:10 0/0:45,0:0.00:0:0:.:1579,0:20:25
chr5 170736490 . G A . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=19.86;TLOD=80.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:54,30:0.387:10:20:0.333:1955,1095:31:23 0/0:85,0:0.00:0:0:.:3056,0:30:55
chr5 171881389 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.53;TLOD=5.25 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:39,1:0.051:1:0:1.00:1514,40:20:19 0/0:31,0:0.00:0:0:.:1173,0:10:21
chr5 174824897 rs2080832 C A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,76:0:0 0/0:4,0:0.00:0:0:.:149,0:2:2
chr5 176520680 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.36;TLOD=51.20 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,18:0.313:9:9:0.500:1549,689:19:21 0/0:70,0:0.00:0:0:.:2691,0:36:34
chr5 176778194 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.61;TLOD=57.07 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:39,21:0.372:7:14:0.667:1525,797:16:23 0/0:67,0:0.00:0:0:.:2564,0:31:36
chr5 177580354 . A C . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.37 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:1:2:0.667:116,119:2:1 0/0:4,0:0.00:0:0:.:157,0:3:1
chr5 177649524 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.95;TLOD=4.46 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:79,4:0.034:2:2:0.500:3175,140:35:44 0/0:71,0:0.00:0:0:.:2768,0:38:33
chr5 178407270 . T C . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.64;TLOD=36.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,13:0.435:7:6:0.538:625,517:6:10 0/0:50,0:0.00:0:0:.:1852,0:21:29
chr5 178951330 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=12.34;TLOD=21.22 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,7:0.350:4:3:0.571:532,272:7:6 0/0:45,0:0.00:0:0:.:1773,0:24:21
chr5 179021617 . CCAGA C . clustered_events;germline_risk ECNT=2;HCNT=2;MAX_ED=5;MIN_ED=5;NLOD=0.903;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:.:0|1:179021617_CCAGA_C:41,83:0:1 0/0:3,0:0.00:0:0:.:0|1:179021617_CCAGA_C:121,0:1:2
chr5 179021622 . T TGGGG . clustered_events;germline_risk ECNT=2;HCNT=2;MAX_ED=5;MIN_ED=5;NLOD=0.903;RPA=1,5;RU=G;STR;TLOD=8.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:.:0|1:179021617_CCAGA_C:38,78:0:1 0/0:3,0:0.00:0:0:.:0|1:179021617_CCAGA_C:110,0:1:2
chr5 179041913 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=10.54;TLOD=4.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:28,3:0.080:1:2:0.667:1150,104:12:16 0/0:47,0:0.00:0:0:.:1912,0:28:19
chr5 179961502 rs11953441 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=11.40 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,3:0.429:1:2:0.667:157,123:3:1 0/0:16,0:0.00:0:0:.:606,0:12:4
chr6 292796 rs3734780 C A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=7.74 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:0:2:1.00:35,77:0:1 0/0:5,0:0.00:0:0:.:167,0:2:3
chr6 399079 rs1473037 T A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=16.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.800:1:3:0.250:39,156:1:0 0/0:6,0:0.00:0:0:.:205,0:4:2
chr6 7482012 . G A . germline_risk ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.46;TLOD=15.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.571:3:1:0.750:105,155:2:1 0/0:5,0:0.00:0:0:.:138,0:3:2
chr6 7590494 . GAGGGCGAGCCTCCACCTGTGGAGGAGC G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.05;TLOD=11.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:30,5:0.125:4:1:.:1111,198:5:25 0/0:40,0:0.00:0:0:.:1483,0:18:22
chr6 15520920 . GCA G . str_contraction;t_lod_fstar ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=9.90;RPA=8,7;RU=CA;STR;TLOD=4.90 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:41,4:0.081:1:3:.:1453,149:19:22 0/0:41,0:0.00:0:0:.:1446,0:23:18
chr6 18191663 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.12;TLOD=15.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,7:0.385:3:4:0.429:332,254:5:3 0/0:20,0:0.00:0:0:.:797,0:14:6
chr6 20124860 rs949550 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=21.41 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,6:0.429:5:1:0.833:317,227:3:5 0/0:5,0:0.00:0:0:.:183,0:5:0
chr6 26056393 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.37;TLOD=19.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:77,11:0.103:4:7:0.636:3181,406:45:32 0/0:84,0:0.00:0:0:.:3370,0:45:39
chr6 27346645 rs13215216 G C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,84:0:0 0/0:5,0:0.00:0:0:.:171,0:3:2
chr6 28042014 rs203871 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,83:0:0 0/0:4,0:0.00:0:0:.:143,0:4:0
chr6 28253398 . G T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.22;TLOD=22.76 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,9:0.462:6:3:0.667:457,323:4:7 0/0:32,0:0.00:0:0:.:1264,0:24:8
chr6 32489874 rs140781802 T A . alt_allele_in_normal;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.48;TLOD=5.15 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:80,1:0.032:1:0:1.00:3067,36:34:46 0/0:84,4:0.051:3:1:0.750:3034,157:40:44
chr6 35943121 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=25.44 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,9:0.467:6:3:0.667:311,342:2:6 0/0:16,0:0.00:0:0:.:653,0:10:6
chr6 36070491 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.03;TLOD=16.61 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,7:0.294:5:2:0.714:647,241:10:6 0/0:36,0:0.00:0:0:.:1469,0:20:16
chr6 36467495 . C T . clustered_events ECNT=2;HCNT=2;MAX_ED=17;MIN_ED=17;NLOD=4.82;TLOD=15.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.571:3:1:0.250:124,156:1:2 0/0:16,0:0.00:0:0:.:636,0:9:7
chr6 36467512 . C A . clustered_events ECNT=2;HCNT=2;MAX_ED=17;MIN_ED=17;NLOD=5.97;TLOD=21.77 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,8:0.545:5:3:0.375:206,298:2:3 0/0:21,0:0.00:0:0:.:806,0:12:9
chr6 39329078 . T A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.50;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,77:0:0 0/0:9,0:0.00:0:0:.:317,0:2:7
chr6 39522626 rs12664369 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.22 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,5:0.600:2:3:0.400:77,197:1:1 0/0:4,0:0.00:0:0:.:145,0:3:1
chr6 39960677 . C A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.82;TLOD=6.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,3:0.182:3:0:0.00:435,118:3:8 0/0:19,0:0.00:0:0:.:715,0:10:9
chr6 41118984 . C A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.33;TLOD=5.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:35,2:0.067:1:1:0.500:1349,77:21:14 0/0:43,0:0.00:0:0:.:1711,0:25:18
chr6 43308482 . T C . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.78;TLOD=5.69 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:32,3:0.077:0:3:0.00:1197,121:12:20 0/0:28,0:0.00:0:0:.:1019,0:14:14
chr6 43420654 . A T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=11.44;TLOD=5.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:50,3:0.044:2:1:0.333:1967,117:24:26 0/0:43,0:0.00:0:0:.:1683,0:21:22
chr6 43476675 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.18;TLOD=16.56 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:15,5:0.278:2:3:0.400:617,198:9:6 0/0:30,0:0.00:0:0:.:1171,0:13:17
chr6 43936475 rs9394975 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.61 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,5:0.600:1:4:0.800:118,180:3:0 0/0:6,0:0.00:0:0:.:209,0:6:0
chr6 44217609 . G A . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=24.08;TLOD=96.11 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:52,35:0.409:15:20:0.429:2064,1326:26:26 0/0:104,0:0.00:0:0:.:4172,0:58:46
chr6 44355707 . C G . PASS ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=6.28;TLOD=18.21 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,5:0.333:2:3:0.600:414,202:4:6 0/0:23,0:0.00:0:0:.:845,0:15:8
chr6 47847399 . C T . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=9.63;TLOD=5.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:44,2:0.056:1:1:0.500:1693,75:18:26 0/0:39,0:0.00:0:0:.:1480,0:17:22
chr6 49440638 . G A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,73:0:0 0/0:5,0:0.00:0:0:.:185,0:1:4
chr6 50683430 . T G . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=13.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:6,4:0.400:2:2:0.500:224,149:3:3 0/0:14,0:0.00:0:0:.:530,0:4:10
chr6 52390400 . G T . germline_risk;t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,77:0:0 0/0:4,0:0.00:0:0:.:162,0:4:0
chr6 53385343 rs761141 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.32 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.500:3:1:0.250:123,156:1:2 0/0:4,0:0.00:0:0:.:161,0:3:1
chr6 54692961 rs9475026 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,78:0:0 0/0:4,0:0.00:0:0:.:144,0:2:2
chr6 55223962 rs148113230 G GTCTA . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.934;RPA=5,6;RU=TCTA;STR;TLOD=12.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.750:1:2:.:84,123:0:2 0/0:3,0:0.00:0:0:.:120,0:0:3
chr6 57399439 rs2397524 C T . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=1;MAX_ED=9;MIN_ED=9;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0|1:57399439_C_T:0,79:0:0 0/0:4,0:0.00:0:0:.:0|1:57399439_C_T:155,0:4:0
chr6 57399448 rs12527178 G T . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=1;MAX_ED=9;MIN_ED=9;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0|1:57399439_C_T:0,79:0:0 0/0:5,0:0.00:0:0:.:0|1:57399439_C_T:202,0:5:0
chr6 57419203 rs28444227 T A . germline_risk DB;ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.500:0:4:0.00:116,155:3:0 0/0:4,0:0.00:0:0:.:135,0:2:2
chr6 57519367 rs5017412 T C . alt_allele_in_normal;clustered_events;germline_risk DB;ECNT=2;HCNT=4;MAX_ED=4;MIN_ED=4;NLOD=0.728;TLOD=13.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,5:1.00:1:4:0.200:0|1:57519367_T_C:0,206:0:0 0/0:6,1:0.250:0:1:0.00:0|1:57519367_T_C:222,39:2:4
chr6 57519371 rs5017413 A G . alt_allele_in_normal;clustered_events;germline_risk DB;ECNT=2;HCNT=4;MAX_ED=4;MIN_ED=4;NLOD=0.728;TLOD=13.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,5:1.00:1:4:0.800:0|1:57519367_T_C:0,188:0:0 0/0:6,1:0.250:0:1:1.00:0|1:57519367_T_C:223,36:2:4
chr6 58777755 . G T . t_lod_fstar ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=4.76 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,2:0.143:1:1:0.500:640,66:7:9 0/0:17,0:0.00:0:0:.:675,0:8:9
chr6 58777960 rs28760950 T C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=3.61;TLOD=5.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:14,3:0.133:1:2:0.333:534,120:7:7 0/0:13,0:0.00:0:0:.:480,0:10:3
chr6 58778652 rs4928391 C G . PASS DB;ECNT=1;HCNT=14;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=6.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,4:0.154:0:4:1.00:527,162:4:9 0/0:27,0:0.00:0:0:.:1089,0:10:17
chr6 58779032 rs28898385 T G . alt_allele_in_normal;germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.24;TLOD=9.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,5:0.167:1:4:0.200:623,187:6:10 0/0:21,1:0.059:1:0:1.00:824,34:10:11
chr6 69665924 . C A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.87;TLOD=38.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,13:0.556:5:8:0.615:456,499:7:4 0/0:15,0:0.00:0:0:.:552,0:5:10
chr6 70981218 . C A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.21;TLOD=13.88 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,4:0.364:3:1:0.250:319,151:6:2 0/0:15,0:0.00:0:0:.:592,0:12:3
chr6 73696809 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=44.04 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,13:0.545:5:8:0.385:379,490:5:5 0/0:21,0:0.00:0:0:.:822,0:12:9
chr6 76583113 rs9443195 T A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=22.14 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,7:0.600:3:4:0.429:154,266:0:4 0/0:10,0:0.00:0:0:.:390,0:5:5
chr6 89974226 . T C . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=21.02;TLOD=4.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:88,3:0.026:0:3:0.00:3355,110:52:36 0/0:80,0:0.00:0:0:.:2992,0:41:39
chr6 98011370 . G A . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=10.57 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,5:0.600:5:0:1.00:83,171:0:2 0/0:6,0:0.00:0:0:.:243,0:2:4
chr6 99622962 rs185119819 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.49 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,2:0.400:0:2:0.00:165,70:2:2 0/0:5,0:0.00:0:0:.:202,0:3:2
chr6 109770612 . G A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.04;TLOD=4.19 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:72,3:0.035:3:0:1.00:2927,101:36:36 0/0:49,0:0.00:0:0:.:1951,0:27:22
chr6 111587928 . A G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.54;TLOD=28.75 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,9:0.400:4:5:0.556:489,342:8:5 0/0:41,0:0.00:0:0:.:1421,0:24:17
chr6 112394326 rs11445316 G GA . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=87;MIN_ED=87;NLOD=1.20;RPA=4,5;RU=A;STR;TLOD=4.03 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:7,2:0.250:1:1:.:291,78:3:4 0/0:4,0:0.00:0:0:.:140,0:3:1
chr6 112394413 rs3798363 G T . clustered_events;germline_risk;t_lod_fstar DB;ECNT=2;HCNT=2;MAX_ED=87;MIN_ED=87;NLOD=1.20;TLOD=4.83 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:9,3:0.286:1:2:0.333:350,96:5:4 0/0:6,0:0.00:0:0:.:221,0:5:1
chr6 112508035 rs9400521 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=11.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.750:2:2:0.500:42,131:0:1 0/0:4,0:0.00:0:0:.:165,0:4:0
chr6 114277625 rs2475631 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.98 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0,81:0:0 0/0:4,0:0.00:0:0:.:138,0:3:1
chr6 117804223 . C G . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=12.08 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.750:2:2:0.500:42,163:0:1 0/0:5,0:0.00:0:0:.:205,0:4:1
chr6 128279497 rs35576497 TA T . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.78;RPA=8,7;RU=A;STR;TLOD=8.14 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,5:0.667:4:1:.:76,193:1:1 0/0:8,0:0.00:0:0:.:285,0:5:3
chr6 129823882 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=40.24 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,15:0.524:7:8:0.467:514,562:3:10 0/0:30,0:0.00:0:0:.:1157,0:15:15
chr6 136566052 . C A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.77;TLOD=4.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,3:0.200:2:1:0.333:323,97:5:3 0/0:17,0:0.00:0:0:.:636,0:13:4
chr6 145968778 . G A . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=5.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:1:1:0.500:0,57:0:0 0/0:4,0:0.00:0:0:.:138,0:1:3
chr6 148593660 . C T . germline_risk ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=7.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.500:1:1:0.500:85,76:2:0 0/0:6,0:0.00:0:0:.:240,0:5:1
chr6 148724067 rs6570848 A T . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,75:0:0 0/0:4,0:0.00:0:0:.:144,0:2:2
chr6 149248356 rs35255983 G A . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=3;HCNT=1;MAX_ED=35;MIN_ED=25;NLOD=0.903;TLOD=8.12 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.667:0|1:149248356_G_A:0,111:0:0 0/0:5,0:0.00:0:0:.:0|1:149248356_G_A:199,0:3:2
chr6 149248381 rs35187970 A G . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar DB;ECNT=3;HCNT=1;MAX_ED=35;MIN_ED=25;NLOD=1.20;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,1:1.00:1:0:0.00:0|1:149248356_G_A:0,39:0:0 0/0:6,0:0.00:0:0:.:0|1:149248356_G_A:220,0:5:1
chr6 149248391 rs34643130 A G . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar DB;ECNT=3;HCNT=1;MAX_ED=35;MIN_ED=25;NLOD=1.20;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,1:1.00:1:0:0.00:0|1:149248356_G_A:0,35:0:0 0/0:6,0:0.00:0:0:.:0|1:149248356_G_A:223,0:5:1
chr6 150227327 rs10457853 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=7.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:0:2:0.00:41,69:0:1 0/0:5,0:0.00:0:0:.:208,0:3:2
chr6 150691356 . C CGTGT . clustered_events;germline_risk;homologous_mapping_event ECNT=3;HCNT=1;MAX_ED=24;MIN_ED=4;NLOD=1.77;RPA=1,3;RU=GT;STR;TLOD=15.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.667:2:2:.:0|1:150691356_C_CGTGT:84,141:2:0 0/0:6,0:0.00:0:0:.:0|1:150691356_C_CGTGT:246,0:3:3
chr6 150691360 rs374148897 C T . clustered_events;germline_risk;homologous_mapping_event DB;ECNT=3;HCNT=1;MAX_ED=24;MIN_ED=4;NLOD=1.81;TLOD=15.81 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.667:2:2:0.500:0|1:150691356_C_CGTGT:72,155:2:0 0/0:6,0:0.00:0:0:.:0|1:150691356_C_CGTGT:204,0:3:3
chr6 150691380 . AGTGGATGTGTGTGCGC A . clustered_events;germline_risk;homologous_mapping_event ECNT=3;HCNT=1;MAX_ED=24;MIN_ED=4;NLOD=1.20;TLOD=12.04 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.600:2:1:.:0|1:150691356_C_CGTGT:80,120:2:0 0/0:4,0:0.00:0:0:.:0|1:150691356_C_CGTGT:160,0:3:1
chr6 151663159 rs6901885 C G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=16.34 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.800:2:2:0.500:35,156:1:0 0/0:8,0:0.00:0:0:.:256,0:3:5
chr6 155614117 rs324361 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=11.35 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,5:0.750:2:3:0.600:35,199:0:1 0/0:4,0:0.00:0:0:.:142,0:1:3
chr6 155761005 rs114431019 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.76;TLOD=19.87 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,5:0.714:1:4:0.200:70,192:2:1 0/0:6,0:0.00:0:0:.:183,0:0:6
chr6 160830008 . C G . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=7.53;TLOD=17.14 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,5:0.278:3:2:0.400:603,196:7:9 0/0:32,0:0.00:0:0:.:1241,0:16:16
chr6 161470667 . G C . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.24;TLOD=32.54 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:27,12:0.321:5:7:0.417:1121,501:13:14 0/0:53,0:0.00:0:0:.:2092,0:20:33
chr6 167707727 rs2076006 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=20.87 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,7:0.545:2:5:0.714:202,249:4:1 0/0:5,0:0.00:0:0:.:193,0:3:2
chr6 169646060 rs11756759 G T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=7.92 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:0:2:0.00:38,78:1:0 0/0:5,0:0.00:0:0:.:206,0:3:2
chr7 647058 . G A . PASS ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=6.32;TLOD=12.27 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:21,4:0.235:3:1:0.750:850,146:11:10 0/0:25,0:0.00:0:0:.:1009,0:11:14
chr7 1543476 . T TCCCCAAAGCC . t_lod_fstar ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=13.62;TLOD=4.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:85,3:0.038:1:1:.:2604,56:36:35 0/0:96,7:0.00:0:0:.:2950,0:48:35
chr7 4308437 . C T . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.55;TLOD=5.56 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:29,3:0.083:2:1:0.333:1147,114:12:17 0/0:56,0:0.00:0:0:.:2248,0:27:29
chr7 5071391 . A C . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=2;HCNT=2;MAX_ED=9;MIN_ED=9;NLOD=9.86;TLOD=4.89 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:34,3:0.091:3:0:0.00:0|1:5071391_A_C:943,34:13:21 0/0:47,3:0.048:1:2:0.667:0|1:5071391_A_C:1282,26:20:27
chr7 5071400 . A C . alt_allele_in_normal;clustered_events;t_lod_fstar ECNT=2;HCNT=2;MAX_ED=9;MIN_ED=9;NLOD=11.98;TLOD=4.82 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:35,3:0.086:3:0:0.00:0|1:5071391_A_C:1078,35:13:22 0/0:50,2:0.042:1:1:0.500:0|1:5071391_A_C:1507,26:22:28
chr7 5104637 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=28.65 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:20,10:0.333:8:2:0.800:791,397:12:8 0/0:25,0:0.00:0:0:.:977,0:12:13
chr7 5161030 rs114119809 G A . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=5.58 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:10,4:0.300:2:2:0.500:398,151:4:6 0/0:9,0:0.00:0:0:.:316,0:8:1
chr7 5569265 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=18.36;TLOD=4.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:128,4:0.020:2:2:0.500:4715,151:65:63 0/0:74,0:0.00:0:0:.:2645,0:34:40
chr7 5632375 . AG A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.20;RPA=6,5;RU=G;STR;TLOD=10.28 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:12,5:0.313:4:1:.:425,195:5:7 0/0:15,0:0.00:0:0:.:545,0:4:11
chr7 6065637 rs10252733 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=7.97 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.750:2:2:0.500:32,122:0:1 0/0:5,0:0.00:0:0:.:184,0:2:3
chr7 10491558 rs60355749 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.59 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,4:0.600:1:3:0.250:154,158:2:2 0/0:5,0:0.00:0:0:.:180,0:3:2
chr7 11983349 rs11388836 T TC . clustered_events;germline_risk DB;ECNT=2;HCNT=1;MAX_ED=5;MIN_ED=5;NLOD=0.903;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:0:3:.:0|1:11983349_T_TC:0,115:0:0 0/0:4,0:0.00:0:0:.:0|1:11983349_T_TC:130,0:4:0
chr7 11983354 rs33920020 C CT . clustered_events;germline_risk DB;ECNT=2;HCNT=1;MAX_ED=5;MIN_ED=5;NLOD=0.903;RPA=1,2;RU=T;STR;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:0:3:.:0|1:11983349_T_TC:0,121:0:0 0/0:4,0:0.00:0:0:.:0|1:11983349_T_TC:123,0:4:0
chr7 12131957 rs149961384 GCA G . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=6;MIN_ED=6;NLOD=0.903;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:.:0|1:12131957_GCA_G:0,82:0:0 0/0:4,0:0.00:0:0:.:0|1:12131957_GCA_G:162,0:0:4
chr7 12131963 rs7807762 A T . clustered_events;germline_risk DB;ECNT=2;HCNT=2;MAX_ED=6;MIN_ED=6;NLOD=1.20;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0|1:12131957_GCA_G:0,67:0:0 0/0:3,0:0.00:0:0:.:0|1:12131957_GCA_G:120,0:0:3
chr7 16620928 rs562687 A G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.81;TLOD=30.86 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,9:0.818:5:4:0.444:117,298:2:1 0/0:7,0:0.00:0:0:.:249,0:1:6
chr7 22251904 rs9639425 T C . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=9.00 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:0:3:0.00:0,125:0:0 0/0:4,0:0.00:0:0:.:158,0:2:2
chr7 23749762 rs3807889 C G . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.11;TLOD=25.29 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,7:0.778:3:4:0.571:78,242:1:1 0/0:7,0:0.00:0:0:.:275,0:5:2
chr7 30946366 rs763422 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=8.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:1:2:0.333:0,112:0:0 0/0:4,0:0.00:0:0:.:151,0:3:1
chr7 31830108 rs76684975 C T . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=8.05 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,2:0.667:1:1:0.500:39,80:1:0 0/0:4,0:0.00:0:0:.:159,0:1:3
chr7 33014556 rs3750112 G C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=12.02 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.600:2:1:0.667:61,124:1:1 0/0:5,0:0.00:0:0:.:199,0:2:3
chr7 34125324 rs192836158 C T . PASS DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.14;TLOD=21.23 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,7:0.200:4:3:0.429:1391,255:13:24 0/0:45,0:0.00:0:0:.:1693,0:30:15
chr7 36118975 . C G . PASS ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=26.63 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:8,8:0.467:3:5:0.625:327,309:4:4 0/0:21,0:0.00:0:0:.:829,0:6:15
chr7 36149652 rs2392420 T C . germline_risk DB;ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=0.903;TLOD=15.92 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:3,7:0.571:4:3:0.571:0|1:36149652_T_C:113,288:0:3 0/0:4,0:0.00:0:0:.:0|1:36149652_T_C:147,0:1:3
chr7 36149653 rs2392421 G A . germline_risk DB;ECNT=2;HCNT=2;MAX_ED=1;MIN_ED=1;NLOD=0.903;TLOD=15.92 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:3,7:0.571:4:3:0.571:0|1:36149652_T_C:125,267:0:3 0/0:4,0:0.00:0:0:.:0|1:36149652_T_C:163,0:1:3
chr7 36278446 . G T . germline_risk ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=10.94 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,3:0.600:2:1:0.667:84,114:0:2 0/0:5,0:0.00:0:0:.:207,0:1:4
chr7 38289036 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.12;TLOD=66.39 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:47,26:0.345:10:16:0.385:1883,1019:14:33 0/0:87,0:0.00:0:0:.:3426,0:40:47
chr7 43288295 rs141343272 TTCC T . germline_risk;str_contraction DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.612;RPA=10,9;RU=TCC;STR;TLOD=12.14 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:1,4:0.800:1:3:.:39,125:0:1 0/0:2,0:0.00:0:0:.:74,0:1:1
chr7 47976289 . TC T . PASS ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=2.71;TLOD=6.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:8,2:0.222:2:0:.:0|1:47976289_TC_T:296,76:3:5 0/0:11,0:0.00:0:0:.:0|1:47976289_TC_T:412,0:5:6
chr7 47976291 . T A . PASS ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=2.71;TLOD=6.93 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:8,2:0.222:2:0:1.00:0|1:47976289_TC_T:298,76:3:5 0/0:11,0:0.00:0:0:.:0|1:47976289_TC_T:440,0:5:6
chr7 49813548 . C T . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:0.00:0,77:0:0 0/0:4,0:0.00:0:0:.:142,0:1:3
chr7 50175435 rs17133694 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=11.17 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,4:0.600:1:3:0.750:83,151:2:0 0/0:4,0:0.00:0:0:.:158,0:2:2
chr7 55233863 rs9649769 A C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=19.64 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,5:0.556:3:2:0.400:197,201:3:2 0/0:4,0:0.00:0:0:.:157,0:3:1
chr7 55778972 . A G . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.41;TLOD=5.11 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,2:0.167:1:1:0.500:495,81:5:8 0/0:11,0:0.00:0:0:.:405,0:10:1
chr7 55866203 rs73130796 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=6.44 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,2:0.333:2:0:0.00:158,71:2:3 0/0:4,0:0.00:0:0:.:153,0:3:1
chr7 55866297 rs113597534 G A . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.902;TLOD=10.43 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:5,3:0.500:2:1:0.667:195,112:2:3 0/0:4,0:0.00:0:0:.:143,0:2:2
chr7 56389451 rs34140272 A T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.06;TLOD=11.37 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:4,4:0.500:3:1:0.250:153,156:3:1 0/0:7,0:0.00:0:0:.:232,0:5:2
chr7 56441192 . G C . alt_allele_in_normal ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;NLOD=27.29;TLOD=16.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:160,13:0.057:4:9:0.308:6466,507:76:84 0/0:194,10:0.030:4:6:0.400:7629,383:99:95
chr7 56855381 . CT C . germline_risk;t_lod_fstar ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:.:0|1:56855381_CT_C:0,84:0:0 0/0:6,0:0.00:0:0:.:0|1:56855381_CT_C:234,0:2:4
chr7 56855383 . G A . germline_risk;t_lod_fstar ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:2:0:1.00:0|1:56855381_CT_C:0,81:0:0 0/0:6,0:0.00:0:0:.:0|1:56855381_CT_C:180,0:2:4
chr7 56881161 rs377210383 T G . alt_allele_in_normal;germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=2.44;TLOD=7.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:16,3:0.231:2:1:0.667:591,107:9:7 0/0:27,2:0.087:1:1:0.500:993,74:14:13
chr7 57022283 rs138472504 A C . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=4.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,2:0.667:0:2:1.00:75,80:0:2 0/0:4,0:0.00:0:0:.:148,0:1:3
chr7 57194155 . G A . t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.91;TLOD=4.33 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,2:0.154:1:1:0.500:443,81:7:4 0/0:13,0:0.00:0:0:.:519,0:8:5
chr7 57246173 rs149289807 CG C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.53;TLOD=7.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:13,7:0.375:3:4:.:456,280:5:8 0/0:13,0:0.00:0:0:.:464,0:5:8
chr7 61969072 rs4515436 G C . t_lod_fstar DB;ECNT=1;HCNT=5;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=5.79 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:31,2:0.077:2:0:1.00:1268,79:17:14 0/0:33,0:0.00:0:0:.:1314,0:17:16
chr7 61969132 rs2167856 G A . clustered_events;homologous_mapping_event;t_lod_fstar DB;ECNT=4;HCNT=10;MAX_ED=80;MIN_ED=10;NLOD=6.92;TLOD=6.18 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:21,3:0.100:1:2:0.333:0|1:61969132_G_A:856,117:11:10 0/0:28,0:0.00:0:0:.:0|1:61969132_G_A:1080,0:15:13
chr7 61969142 rs4339516 G A . clustered_events;homologous_mapping_event;t_lod_fstar DB;ECNT=4;HCNT=10;MAX_ED=80;MIN_ED=10;NLOD=6.62;TLOD=6.22 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:20,3:0.105:1:2:0.333:0|1:61969132_G_A:834,119:10:10 0/0:25,0:0.00:0:0:.:0|1:61969132_G_A:949,0:13:12
chr7 61969153 rs4490723 C T . clustered_events;homologous_mapping_event;t_lod_fstar DB;ECNT=4;HCNT=10;MAX_ED=80;MIN_ED=10;NLOD=7.52;TLOD=6.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:PGT:PID:QSS:REF_F1R2:REF_F2R1 0/1:21,3:0.095:1:2:0.667:0|1:61969132_G_A:847,91:9:12 0/0:25,0:0.00:0:0:.:0|1:61969132_G_A:975,0:13:12
chr7 61969212 rs28832900 T C . clustered_events;germline_risk;homologous_mapping_event;t_lod_fstar DB;ECNT=4;HCNT=16;MAX_ED=80;MIN_ED=10;NLOD=4.82;TLOD=6.13 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:24,3:0.095:2:1:0.667:899,116:9:15 0/0:21,0:0.00:0:0:.:783,0:8:13
chr7 63035360 rs113509699 C T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=10.73 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.500:2:1:0.333:118,111:1:2 0/0:5,0:0.00:0:0:.:194,0:3:2
chr7 64852790 . TTG T . alt_allele_in_normal;str_contraction ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.64;RPA=8,7;RU=TG;STR;TLOD=9.95 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:37,10:0.188:4:6:.:1380,381:22:15 0/0:62,3:0.038:1:2:.:2333,116:30:32
chr7 65274674 rs1829942 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.20;TLOD=14.54 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:2,5:0.667:2:3:0.400:80,184:1:1 0/0:4,0:0.00:0:0:.:139,0:2:2
chr7 65670762 rs880166 T C . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.602;TLOD=7.80 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,2:0.500:0:2:0.00:123,84:1:2 0/0:4,0:0.00:0:0:.:131,0:2:2
chr7 65972566 rs57739047 A T . germline_risk DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=8.55 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,3:1.00:2:1:0.333:0,111:0:0 0/0:4,0:0.00:0:0:.:154,0:1:3
chr7 66010251 . T C . germline_risk;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=1.51;TLOD=4.38 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:0.00:0,77:0:0 0/0:5,0:0.00:0:0:.:197,0:1:4
chr7 66461703 . C T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.52;TLOD=18.48 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:11,7:0.353:4:3:0.429:448,250:4:7 0/0:25,0:0.00:0:0:.:1002,0:11:14
chr7 66461858 . C A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=21.67;TLOD=73.10 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:46,29:0.386:17:12:0.414:1703,1077:20:26 0/0:100,0:0.00:0:0:.:3685,0:49:51
chr7 67234844 . C G . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.31;TLOD=8.52 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,3:0.600:0:3:1.00:81,96:0:3 0/0:14,0:0.00:0:0:.:532,0:6:8
chr7 67288299 rs2170518 A G . germline_risk;t_lod_fstar DB;ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=0.903;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:0,2:1.00:0:2:1.00:0,72:0:0 0/0:4,0:0.00:0:0:.:138,0:2:2
chr7 67829514 rs141141593 CTCTTCTTCT C . germline_risk DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=0.903;RPA=4,1;RU=TCT;STR;TLOD=6.45 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:3,4:0.400:0:4:.:124,134:3:0 0/0:3,0:0.00:0:0:.:122,0:2:1
chr7 70255576 . GCCA G . str_contraction ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=16.20;RPA=8,7;RU=CCA;STR;TLOD=7.96 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:40,4:0.094:1:3:.:1602,155:19:21 0/0:71,1:0.00:0:1:.:2842,41:35:36
chr7 72338156 . A G . t_lod_fstar ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=4.50 GT:AD:AF:ALT_F1R2:ALT_F2R1:FOXOG:QSS:REF_F1R2:REF_F2R1 0/1:31,2:0.069:1:1:0.500:1030,67:15:16 0/0:30,0:0.00:0:0:.:1021,0:17:13