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PubHub.project
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{
"profiles": {
"mongo1": {
"dataSource": {
"host": "localhost",
"port": "27017",
"db": "doiutils",
"collection": "metadata",
"initialize": true
},
"queryEndpoints": {
"getByDoi": {
"queryTemplate": "{\"doi\": \"$doiString$\"} ",
"metaData": {},
"tags": [],
"bindVariables": {
"doiString": {
"name": "doiString",
"required": true,
"defaultValue": "",
"description": ""
}
},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"name": "getByDoi",
"timeCreated": "Mon Oct 19 15:09:59 EDT 2015",
"createdBy": "admin",
"description": " "
},
"getAll": {
"queryTemplate": "{\n\t\"_operation\" : \"find\" ,\n\t\"_operation_args\" : {\n\t\t\t\t\t\t\t\"query\" : {} ,\n\t\t\t\t\t\t\t\"fields\" :{ \u0027_id\u0027 : 0 }\n\t\t\t\t\t\t}\n}\n",
"metaData": {},
"tags": [],
"bindVariables": {},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"name": "getAll",
"timeCreated": "Mon Nov 09 17:01:16 EST 2015",
"createdBy": "admin",
"description": "get_all_data_except_for_id "
}
},
"deleteEndpoints": {
"delete_doc": {
"queryTemplate": "{name: \"POST\"}",
"tags": [],
"bindVariables": {},
"stage": "UNVERIFIED",
"name": "delete_doc",
"timeCreated": "Fri Sep 25 16:15:29 EDT 2015",
"createdBy": "admin",
"description": ""
},
"delete_one": {
"queryTemplate": " {name: \"junior\"}",
"tags": [],
"bindVariables": {},
"stage": "UNVERIFIED",
"name": "delete_one",
"timeCreated": "Tue Oct 06 16:21:49 EDT 2015",
"createdBy": "admin",
"description": ""
}
},
"submitEndpoints": {
"csvFile": {
"type": "MULTIPART",
"properties": {
"inputType": "CSV_FILE"
},
"name": "csvFile",
"timeCreated": "Fri Sep 25 15:04:05 EDT 2015",
"createdBy": "admin",
"description": ""
},
"json": {
"type": "FORM_DATA",
"properties": {
"inputType": "JSON"
},
"name": "json",
"timeCreated": "Fri Sep 25 15:04:05 EDT 2015",
"createdBy": "admin",
"description": ""
},
"jsonFile": {
"type": "MULTIPART",
"properties": {
"inputType": "JSON_FILE"
},
"name": "jsonFile",
"timeCreated": "Fri Sep 25 15:04:05 EDT 2015",
"createdBy": "admin",
"description": ""
},
"csv": {
"type": "FORM_DATA",
"properties": {
"inputType": "CSV"
},
"name": "csv",
"timeCreated": "Fri Sep 25 15:04:05 EDT 2015",
"createdBy": "admin",
"description": ""
}
},
"providerId": "edu.emory.cci.bindaas.datasource.provider.mongodb.MongoDBProvider",
"providerVersion": 1,
"name": "mongo1",
"timeCreated": "Fri Sep 25 15:04:05 EDT 2015",
"createdBy": "admin",
"description": "mongo1"
},
"Files": {
"dataSource": {
"host": "localhost",
"port": "27017",
"db": "doiutils",
"collection": "files",
"initialize": true
},
"queryEndpoints": {
"getFilePathClone": {
"queryTemplate": "{\n\t\"_operation\" : \"find\" ,\n\t\"_operation_args\" : {\n\t\t\"query\" : { \"doiString\" : \"$doiString$\", \"_id\" : ObjectId(\"$ID$\") }\n\t}\n}\n ",
"metaData": {},
"tags": [],
"bindVariables": {
"doiString": {
"name": "doiString",
"required": true,
"defaultValue": "",
"description": ""
},
"ID": {
"name": "ID",
"required": true,
"defaultValue": "",
"description": ""
}
},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"name": "getFilePathClone",
"timeCreated": "Wed Nov 25 14:41:11 EST 2015",
"createdBy": "admin",
"description": "get_path_of_file_given_doi_and_uid "
},
"getFilePath": {
"queryTemplate": "{\n\t\"_operation\" : \"find\" ,\n\t\"_operation_args\" : {\n\t\t\"query\" : { \"doiString\" : \"$doiString$\", \"uid\": $uid$} ,\n\t\t\"fields\" :{ \"_id\" : 0, \"fileType\": 0, \"fileName\": 0, \"doiString\": 0 }\n\t}\n}\n ",
"metaData": {},
"tags": [],
"bindVariables": {
"doiString": {
"name": "doiString",
"required": true,
"defaultValue": "",
"description": ""
},
"uid": {
"name": "uid",
"required": true,
"defaultValue": "",
"description": ""
}
},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"name": "getFilePath",
"timeCreated": "Tue Dec 01 17:07:05 EST 2015",
"createdBy": "admin",
"description": "get_path_of_file_given_doi_and_uid "
},
"getFilesByDoi": {
"queryTemplate": "{\"doiString\": \"$doiString$\"}",
"metaData": {},
"tags": [],
"bindVariables": {
"doiString": {
"name": "doiString",
"required": true,
"defaultValue": "",
"description": ""
}
},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"name": "getFilesByDoi",
"timeCreated": "Tue Dec 01 17:08:07 EST 2015",
"createdBy": "admin",
"description": " "
}
},
"deleteEndpoints": {},
"submitEndpoints": {
"csvFile": {
"type": "MULTIPART",
"properties": {
"inputType": "CSV_FILE"
},
"name": "csvFile",
"timeCreated": "Mon Nov 23 17:01:06 EST 2015",
"createdBy": "admin",
"description": ""
},
"json": {
"type": "FORM_DATA",
"properties": {
"inputType": "JSON"
},
"name": "json",
"timeCreated": "Mon Nov 23 17:01:06 EST 2015",
"createdBy": "admin",
"description": ""
},
"jsonFile": {
"type": "MULTIPART",
"properties": {
"inputType": "JSON_FILE"
},
"name": "jsonFile",
"timeCreated": "Mon Nov 23 17:01:06 EST 2015",
"createdBy": "admin",
"description": ""
},
"csv": {
"type": "FORM_DATA",
"properties": {
"inputType": "CSV"
},
"name": "csv",
"timeCreated": "Mon Nov 23 17:01:06 EST 2015",
"createdBy": "admin",
"description": ""
}
},
"providerId": "edu.emory.cci.bindaas.datasource.provider.mongodb.MongoDBProvider",
"providerVersion": 1,
"name": "Files",
"timeCreated": "Mon Nov 23 17:01:06 EST 2015",
"createdBy": "admin",
"description": "store_files"
},
"Metadata": {
"dataSource": {
"host": "localhost",
"port": "27017",
"db": "doiutils",
"collection": "metadata",
"initialize": true
},
"queryEndpoints": {
"getByDoi": {
"queryTemplate": "{\"doi\": \"$doiString$\"} ",
"metaData": {},
"tags": [],
"bindVariables": {
"doiString": {
"name": "doiString",
"required": true,
"defaultValue": "",
"description": ""
}
},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "ANY"
},
"name": "getByDoi",
"timeCreated": "Wed Dec 23 17:17:04 EST 2015",
"createdBy": "ashishof77",
"description": "getByDoi"
},
"getAll": {
"queryTemplate": "{\n\t\"_operation\" : \"find\" ,\n\t\"_operation_args\" : {\n\t\t\t\t\t\t\t\"query\" : {} ,\n\t\t\t\t\t\t\t\"fields\" :{ \u0027_id\u0027 : 0 }\n\t\t\t\t\t\t}\n}\n ",
"metaData": {},
"tags": [],
"bindVariables": {},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "ANY"
},
"name": "getAll",
"timeCreated": "Wed Dec 23 17:24:19 EST 2015",
"createdBy": "ashishof77",
"description": "get_all_data_except_for_id "
}
},
"deleteEndpoints": {},
"submitEndpoints": {
"csvFile": {
"type": "MULTIPART",
"properties": {
"inputType": "CSV_FILE"
},
"name": "csvFile",
"timeCreated": "Wed Dec 23 17:16:06 EST 2015",
"createdBy": "ashishof77",
"description": ""
},
"json": {
"type": "FORM_DATA",
"properties": {
"inputType": "JSON"
},
"name": "json",
"timeCreated": "Wed Dec 23 17:16:06 EST 2015",
"createdBy": "ashishof77",
"description": ""
},
"jsonFile": {
"type": "MULTIPART",
"properties": {
"inputType": "JSON_FILE"
},
"name": "jsonFile",
"timeCreated": "Wed Dec 23 17:16:06 EST 2015",
"createdBy": "ashishof77",
"description": ""
},
"csv": {
"type": "FORM_DATA",
"properties": {
"inputType": "CSV"
},
"name": "csv",
"timeCreated": "Wed Dec 23 17:16:06 EST 2015",
"createdBy": "ashishof77",
"description": ""
}
},
"providerId": "edu.emory.cci.bindaas.datasource.provider.mongodb.MongoDBProvider",
"providerVersion": 1,
"name": "Metadata",
"timeCreated": "Wed Dec 23 17:16:06 EST 2015",
"createdBy": "ashishof77",
"description": "metadata for DOIs"
},
"TCIA": {
"dataSource": {
"host": "localhost",
"port": "27017",
"db": "TCIA",
"collection": "doi",
"initialize": true
},
"queryEndpoints": {
"getAll": {
"queryTemplate": "{\n\t\"_operation\" : \"find\" ,\n\t\"_operation_args\" : {\n\t\t\t\t\t\t\t\"query\" : {} ,\n\t\t\t\t\t\t\t\"fields\" :{ \u0027_id\u0027 : 0 }\n\t\t\t\t\t\t}\n}\n \n",
"metaData": {},
"tags": [],
"bindVariables": {},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"name": "getAll",
"timeCreated": "Fri Feb 05 16:36:21 EST 2016",
"createdBy": "ganesh.emory",
"description": "gets all the data"
},
"getByDoi": {
"queryTemplate": "{\"doi\": \"$doiString$\"} ",
"metaData": {},
"tags": [],
"bindVariables": {
"doiString": {
"name": "doiString",
"required": true,
"defaultValue": "",
"description": ""
}
},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"name": "getByDoi",
"timeCreated": "Fri Feb 05 17:33:34 EST 2016",
"createdBy": "ganesh.emory",
"description": ""
}
},
"deleteEndpoints": {},
"submitEndpoints": {
"csvFile": {
"type": "MULTIPART",
"properties": {
"inputType": "CSV_FILE"
},
"name": "csvFile",
"timeCreated": "Tue Feb 02 15:07:24 EST 2016",
"createdBy": "ganesh.emory",
"description": ""
},
"json": {
"type": "FORM_DATA",
"properties": {
"inputType": "JSON"
},
"name": "json",
"timeCreated": "Tue Feb 02 15:07:24 EST 2016",
"createdBy": "ganesh.emory",
"description": ""
},
"jsonFile": {
"type": "MULTIPART",
"properties": {
"inputType": "JSON_FILE"
},
"name": "jsonFile",
"timeCreated": "Tue Feb 02 15:07:24 EST 2016",
"createdBy": "ganesh.emory",
"description": ""
},
"csv": {
"type": "FORM_DATA",
"properties": {
"inputType": "CSV"
},
"name": "csv",
"timeCreated": "Tue Feb 02 15:07:24 EST 2016",
"createdBy": "ganesh.emory",
"description": ""
}
},
"providerId": "edu.emory.cci.bindaas.datasource.provider.mongodb.MongoDBProvider",
"providerVersion": 1,
"name": "TCIA",
"timeCreated": "Tue Feb 02 15:07:24 EST 2016",
"createdBy": "ganesh.emory",
"description": "TCIA DOIs"
},
"TCIA_DOI_RESOURCES": {
"dataSource": {
"host": "127.0.0.1",
"port": "27017",
"db": "TCIA",
"collection": "doi_resources",
"initialize": true
},
"queryEndpoints": {
"getAll": {
"queryTemplate": "{\n\t\"_operation\" : \"find\" ,\n\t\"_operation_args\" : {\n\t\t\t\t\t\t\t\"query\" : { } \n\t\t\t\t\t\t}\n}\n",
"metaData": {},
"tags": [],
"bindVariables": {},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"name": "getAll",
"timeCreated": "Thu Mar 24 14:39:55 EDT 2016",
"createdBy": "admin",
"description": "gets all the Data"
},
"getByDoi": {
"queryTemplate": "{\"doi\": \"$doi$\"} ",
"metaData": {},
"tags": [],
"bindVariables": {
"doi": {
"name": "doi",
"required": true,
"defaultValue": "",
"description": ""
}
},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"name": "getByDoi",
"timeCreated": "Thu Mar 24 17:54:57 EDT 2016",
"createdBy": "admin",
"description": "Gets data for given DOI "
},
"getByResourceID": {
"queryTemplate": "{\"resourceID\": \"$resourceID$\"}",
"metaData": {},
"tags": [],
"bindVariables": {
"resourceID": {
"name": "resourceID",
"required": true,
"defaultValue": "",
"description": ""
}
},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"name": "getByResourceID",
"timeCreated": "Fri Apr 01 11:35:03 EDT 2016",
"createdBy": "admin",
"description": "gets resource by resourceID"
},
"getFileForResource": {
"queryTemplate": "{\"resourceID\": \"$resourceID$\"} ",
"metaData": {},
"tags": [],
"bindVariables": {
"resourceID": {
"name": "resourceID",
"required": true,
"defaultValue": "",
"description": ""
}
},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"queryResultModifiers": {
"name": "edu.emory.cci.bindaas.filedownload.FileDownloadQRM",
"properties": {
"fileLinkAttribute": "info.resourceData"
}
},
"name": "getFileForResource",
"timeCreated": "Fri Apr 01 16:09:17 EDT 2016",
"createdBy": "admin",
"description": "returns file given filepath"
},
"getFileForResourceClone": {
"queryTemplate": "{\"resourceID\": \"$resourceID$\"} ",
"metaData": {},
"tags": [],
"bindVariables": {
"resourceID": {
"name": "resourceID",
"required": true,
"defaultValue": "",
"description": ""
}
},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"queryResultModifiers": {
"name": "edu.emory.cci.bindaas.blobdownload.BlobDownloadPlugin",
"properties": {
"fileLinkAttribute": "filePath",
"zipDownload": false
}
},
"name": "getFileForResourceClone",
"timeCreated": "Tue Apr 05 17:11:54 EDT 2016",
"createdBy": "admin",
"description": "returns file given filepath "
}
},
"deleteEndpoints": {
"deleteAll": {
"queryTemplate": "{}",
"tags": [],
"bindVariables": {},
"stage": "UNVERIFIED",
"name": "deleteAll",
"timeCreated": "Thu Mar 31 18:52:05 EDT 2016",
"createdBy": "admin",
"description": "deletes all data"
},
"deleteOne": {
"queryTemplate": "{\n\t\"_operation\" : \"delete\" ,\n\t\"_operation_args\" : {\n\t\t\t\t\t\t\t\"query\" : { \u0027resourceData\u0027 : \u0027$x$\u0027 }\n\t\t\t\t\t\t}\n}\n",
"tags": [],
"bindVariables": {
"x": {
"name": "x",
"required": true,
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}
},
"stage": "UNVERIFIED",
"name": "deleteOne",
"timeCreated": "Fri Apr 01 16:53:23 EDT 2016",
"createdBy": "admin",
"description": ""
}
},
"submitEndpoints": {
"csvFile": {
"type": "MULTIPART",
"properties": {
"inputType": "CSV_FILE"
},
"name": "csvFile",
"timeCreated": "Thu Mar 24 14:02:20 EDT 2016",
"createdBy": "admin",
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},
"json": {
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},
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},
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},
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"createdBy": "admin",
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},
"csv": {
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"properties": {
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},
"name": "csv",
"timeCreated": "Thu Mar 24 14:02:20 EDT 2016",
"createdBy": "admin",
"description": ""
}
},
"providerId": "edu.emory.cci.bindaas.datasource.provider.mongodb.MongoDBProvider",
"providerVersion": 1,
"name": "TCIA_DOI_RESOURCES",
"timeCreated": "Thu Mar 24 14:02:20 EDT 2016",
"createdBy": "admin",
"description": "DOI files, images, shared lists and other reosources for the TCIA_DOI_APP project"
},
"TCIA_DOI_APP": {
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"host": "127.0.0.1",
"port": "27017",
"db": "TCIA",
"collection": "doi",
"initialize": true
},
"queryEndpoints": {
"getAll": {
"queryTemplate": "{\n\t\"_operation\" : \"find\" ,\n\t\"_operation_args\" : {\n\t\t\t\t\t\t\t\"query\" : { } \n\t\t\t\t\t\t}\n}\n",
"metaData": {},
"tags": [],
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"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"name": "getAll",
"timeCreated": "Mon Feb 29 11:28:09 EST 2016",
"createdBy": "admin",
"description": "Gets all the data"
},
"getByDoi": {
"queryTemplate": "{\"doi\": \"$doi$\"} ",
"metaData": {},
"tags": [],
"bindVariables": {
"doi": {
"name": "doi",
"required": true,
"defaultValue": "",
"description": ""
}
},
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"outputFormat": {
"outputFormat": "JSON"
},
"name": "getByDoi",
"timeCreated": "Thu Mar 24 15:17:00 EDT 2016",
"createdBy": "admin",
"description": "Gets data for given DOI"
}
},
"deleteEndpoints": {
"deleteAll": {
"queryTemplate": "{\n\t\"_operation\" : \"delete\" ,\n\t\"_operation_args\" : {\n\t\t\t\t\t\t\t\"query\" : { }\n\t\t\t\t\t\t}\n}\n",
"tags": [],
"bindVariables": {},
"stage": "UNVERIFIED",
"name": "deleteAll",
"timeCreated": "Wed Mar 23 23:16:06 EDT 2016",
"createdBy": "admin",
"description": "Deletes all data"
},
"deleteByDoi": {
"queryTemplate": "{\"doi\": \"$doi$\"} ",
"tags": [],
"bindVariables": {
"doi": {
"name": "doi",
"required": true,
"defaultValue": "",
"description": ""
}
},
"stage": "UNVERIFIED",
"name": "deleteByDoi",
"timeCreated": "Fri Mar 25 08:35:20 EDT 2016",
"createdBy": "admin",
"description": "Deletes given DOI"
}
},
"submitEndpoints": {
"csvFile": {
"type": "MULTIPART",
"properties": {
"inputType": "CSV_FILE"
},
"name": "csvFile",
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},
"json": {
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"properties": {
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},
"name": "json",
"timeCreated": "Mon Feb 29 11:27:27 EST 2016",
"createdBy": "admin",
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},
"jsonFile": {
"type": "MULTIPART",
"properties": {
"inputType": "JSON_FILE"
},
"name": "jsonFile",
"timeCreated": "Mon Feb 29 11:27:27 EST 2016",
"createdBy": "admin",
"description": ""
},
"csv": {
"type": "FORM_DATA",
"properties": {
"inputType": "CSV"
},
"name": "csv",
"timeCreated": "Mon Feb 29 11:27:27 EST 2016",
"createdBy": "admin",
"description": ""
}
},
"providerId": "edu.emory.cci.bindaas.datasource.provider.mongodb.MongoDBProvider",
"providerVersion": 1,
"name": "TCIA_DOI_APP",
"timeCreated": "Thu Mar 24 15:16:17 EDT 2016",
"createdBy": "admin",
"description": "App for TCIA DOIs"
},
"DOI_RESOURCE_VERSIONS": {
"dataSource": {
"host": "127.0.0.1",
"port": "27017",
"db": "TCIA",
"collection": "ResourceVersions",
"initialize": true
},
"queryEndpoints": {
"getAll": {
"queryTemplate": "{\n\t\"_operation\" : \"find\" ,\n\t\"_operation_args\" : {\n\t\t\t\t\t\t\t\"query\" : { }\n\t\t\t\t\t\t}\n}",
"metaData": {},
"tags": [],
"bindVariables": {},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"name": "getAll",
"timeCreated": "Fri Mar 25 15:13:05 EDT 2016",
"createdBy": "admin",
"description": "Get all the versions "
},
"getVersionsForDoi": {
"queryTemplate": "{\"doi\": \"$doi$\"} ",
"metaData": {},
"tags": [],
"bindVariables": {
"doi": {
"name": "doi",
"required": true,
"defaultValue": "",
"description": ""
}
},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"name": "getVersionsForDoi",
"timeCreated": "Mon Mar 28 10:48:29 EDT 2016",
"createdBy": "admin",
"description": "Gets all versions for given DOI"
},
"getResources": {
"queryTemplate": "{\n\t\"_operation\" : \"find\" ,\n\t\"_operation_args\" : {\n\t\t\"query\" : {\"doi\": \"$doi$\", \"versionID\": \"$versionID$\"} \n\t}\n}\n ",
"metaData": {},
"tags": [],
"bindVariables": {
"doi": {
"name": "doi",
"required": true,
"defaultValue": "",
"description": ""
},
"versionID": {
"name": "versionID",
"required": true,
"defaultValue": "",
"description": ""
}
},
"stage": "UNVERIFIED",
"outputFormat": {
"outputFormat": "JSON"
},
"name": "getResources",
"timeCreated": "Fri Apr 01 11:26:43 EDT 2016",
"createdBy": "admin",
"description": "get resources given version and doi "
}
},
"deleteEndpoints": {
"deleteAll": {
"queryTemplate": "{}",
"tags": [],
"bindVariables": {},
"stage": "UNVERIFIED",
"name": "deleteAll",
"timeCreated": "Thu Mar 31 18:51:50 EDT 2016",
"createdBy": "admin",
"description": "deletes all data"
}
},
"submitEndpoints": {
"csvFile": {
"type": "MULTIPART",
"properties": {
"inputType": "CSV_FILE"
},
"name": "csvFile",
"timeCreated": "Fri Mar 25 14:12:04 EDT 2016",
"createdBy": "admin",
"description": ""
},
"json": {
"type": "FORM_DATA",
"properties": {
"inputType": "JSON"
},
"name": "json",
"timeCreated": "Fri Mar 25 14:12:04 EDT 2016",
"createdBy": "admin",
"description": ""
},
"jsonFile": {
"type": "MULTIPART",
"properties": {
"inputType": "JSON_FILE"
},
"name": "jsonFile",
"timeCreated": "Fri Mar 25 14:12:04 EDT 2016",
"createdBy": "admin",
"description": ""
},
"csv": {
"type": "FORM_DATA",
"properties": {
"inputType": "CSV"
},
"name": "csv",
"timeCreated": "Fri Mar 25 14:12:04 EDT 2016",
"createdBy": "admin",
"description": ""
}
},
"providerId": "edu.emory.cci.bindaas.datasource.provider.mongodb.MongoDBProvider",
"providerVersion": 1,
"name": "DOI_RESOURCE_VERSIONS",
"timeCreated": "Fri Mar 25 14:12:04 EDT 2016",
"createdBy": "admin",
"description": "Versions for DOI Resources"
}
},
"params": {},
"name": "PubHub",
"timeCreated": "Fri Sep 25 14:58:32 EDT 2015",
"createdBy": "admin",
"description": "test"
}