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index.json
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[
{
"authors": null,
"categories": [],
"content": "This week I have been attending the #COMBINE18 Symposium and #ABACBS2018 Conference. It\u0026rsquo;s been action-packed with a huge number of fantastic talks, posters, and discussion.\nClick here to download my poster on \u0026lsquo;Examining cell quality in association with specific cell types for droplet-based single cell RNA-Sequencing\u0026rsquo;\n",
"date": 1543363200,
"expirydate": -62135596800,
"kind": "page",
"lang": "en",
"lastmod": 1543363200,
"objectID": "ef2bc84cde69946ca00eff25a31034fe",
"permalink": "https://shazanfar.github.io/post/abacbs-2018/",
"publishdate": "2018-11-28T00:00:00Z",
"relpermalink": "/post/abacbs-2018/",
"section": "post",
"summary": "This week I have been attending the #COMBINE18 Symposium and #ABACBS2018 Conference. It\u0026rsquo;s been action-packed with a huge number of fantastic talks, posters, and discussion.\nClick here to download my poster on \u0026lsquo;Examining cell quality in association with specific cell types for droplet-based single cell RNA-Sequencing\u0026rsquo;",
"tags": [],
"title": "ABACBS 2018",
"type": "post"
},
{
"authors": null,
"categories": null,
"content": " In this tutorial, I\u0026rsquo;ll share my top 10 tips for getting started with Academic:\nTip 1 \u0026hellip;\nTip 2 \u0026hellip;\n",
"date": 1536415200,
"expirydate": -62135596800,
"kind": "page",
"lang": "en",
"lastmod": 1536415200,
"objectID": "6a451186c775f5f0adb3a0416d0cb711",
"permalink": "https://shazanfar.github.io/tutorial/example/",
"publishdate": "2018-09-09T00:00:00+10:00",
"relpermalink": "/tutorial/example/",
"section": "tutorial",
"summary": "In this tutorial, I\u0026rsquo;ll share my top 10 tips for getting started with Academic:\nTip 1 \u0026hellip;\nTip 2 \u0026hellip;",
"tags": null,
"title": "Example Page",
"type": "docs"
},
{
"authors": [],
"categories": null,
"content": "Click on the Slides button above to view the built-in slides feature.\n Slides can be added in a few ways:\n Create slides using Academic\u0026rsquo;s Slides feature and link using url_slides parameter in the front matter of the talk file Upload an existing slide deck to static/ and link using url_slides parameter in the front matter of the talk file Embed your slides (e.g. Google Slides) or presentation video on this page using shortcodes. Further talk details can easily be added to this page using Markdown and $\\rm \\LaTeX$ math code.\n",
"date": 1483189200,
"expirydate": -62135596800,
"kind": "page",
"lang": "en",
"lastmod": 1483189200,
"objectID": "96344c08df50a1b693cc40432115cbe3",
"permalink": "https://shazanfar.github.io/talk/example/",
"publishdate": "2017-01-01T00:00:00+11:00",
"relpermalink": "/talk/example/",
"section": "talk",
"summary": "Lorem ipsum dolor sit amet, consectetur adipiscing elit. Duis posuere tellus ac convallis placerat. Proin tincidunt magna sed ex sollicitudin condimentum. Sed ac faucibus dolor, scelerisque sollicitudin nisi. Cras purus urna, suscipit quis sapien eu, pulvinar tempor diam.",
"tags": [],
"title": "Example Talk",
"type": "talk"
},
{
"authors": null,
"categories": null,
"content": "",
"date": 1461679200,
"expirydate": -62135596800,
"kind": "page",
"lang": "en",
"lastmod": 1461679200,
"objectID": "d1311ddf745551c9e117aa4bb7e28516",
"permalink": "https://shazanfar.github.io/project/external-project/",
"publishdate": "2016-04-27T00:00:00+10:00",
"relpermalink": "/project/external-project/",
"section": "project",
"summary": "An example of linking directly to an external project website using `external_link`.",
"tags": [
"Demo"
],
"title": "External Project",
"type": "project"
},
{
"authors": null,
"categories": null,
"content": "Lorem ipsum dolor sit amet, consectetur adipiscing elit. Duis posuere tellus ac convallis placerat. Proin tincidunt magna sed ex sollicitudin condimentum. Sed ac faucibus dolor, scelerisque sollicitudin nisi. Cras purus urna, suscipit quis sapien eu, pulvinar tempor diam. Quisque risus orci, mollis id ante sit amet, gravida egestas nisl. Sed ac tempus magna. Proin in dui enim. Donec condimentum, sem id dapibus fringilla, tellus enim condimentum arcu, nec volutpat est felis vel metus. Vestibulum sit amet erat at nulla eleifend gravida.\nNullam vel molestie justo. Curabitur vitae efficitur leo. In hac habitasse platea dictumst. Sed pulvinar mauris dui, eget varius purus congue ac. Nulla euismod, lorem vel elementum dapibus, nunc justo porta mi, sed tempus est est vel tellus. Nam et enim eleifend, laoreet sem sit amet, elementum sem. Morbi ut leo congue, maximus velit ut, finibus arcu. In et libero cursus, rutrum risus non, molestie leo. Nullam congue quam et volutpat malesuada. Sed risus tortor, pulvinar et dictum nec, sodales non mi. Phasellus lacinia commodo laoreet. Nam mollis, erat in feugiat consectetur, purus eros egestas tellus, in auctor urna odio at nibh. Mauris imperdiet nisi ac magna convallis, at rhoncus ligula cursus.\nCras aliquam rhoncus ipsum, in hendrerit nunc mattis vitae. Duis vitae efficitur metus, ac tempus leo. Cras nec fringilla lacus. Quisque sit amet risus at ipsum pharetra commodo. Sed aliquam mauris at consequat eleifend. Praesent porta, augue sed viverra bibendum, neque ante euismod ante, in vehicula justo lorem ac eros. Suspendisse augue libero, venenatis eget tincidunt ut, malesuada at lorem. Donec vitae bibendum arcu. Aenean maximus nulla non pretium iaculis. Quisque imperdiet, nulla in pulvinar aliquet, velit quam ultrices quam, sit amet fringilla leo sem vel nunc. Mauris in lacinia lacus.\nSuspendisse a tincidunt lacus. Curabitur at urna sagittis, dictum ante sit amet, euismod magna. Sed rutrum massa id tortor commodo, vitae elementum turpis tempus. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aenean purus turpis, venenatis a ullamcorper nec, tincidunt et massa. Integer posuere quam rutrum arcu vehicula imperdiet. Mauris ullamcorper quam vitae purus congue, quis euismod magna eleifend. Vestibulum semper vel augue eget tincidunt. Fusce eget justo sodales, dapibus odio eu, ultrices lorem. Duis condimentum lorem id eros commodo, in facilisis mauris scelerisque. Morbi sed auctor leo. Nullam volutpat a lacus quis pharetra. Nulla congue rutrum magna a ornare.\nAliquam in turpis accumsan, malesuada nibh ut, hendrerit justo. Cum sociis natoque penatibus et magnis dis parturient montes, nascetur ridiculus mus. Quisque sed erat nec justo posuere suscipit. Donec ut efficitur arcu, in malesuada neque. Nunc dignissim nisl massa, id vulputate nunc pretium nec. Quisque eget urna in risus suscipit ultricies. Pellentesque odio odio, tincidunt in eleifend sed, posuere a diam. Nam gravida nisl convallis semper elementum. Morbi vitae felis faucibus, vulputate orci placerat, aliquet nisi. Aliquam erat volutpat. Maecenas sagittis pulvinar purus, sed porta quam laoreet at.\n",
"date": 1461679200,
"expirydate": -62135596800,
"kind": "page",
"lang": "en",
"lastmod": 1461679200,
"objectID": "8f66d660a9a2edc2d08e68cc30f701f7",
"permalink": "https://shazanfar.github.io/project/internal-project/",
"publishdate": "2016-04-27T00:00:00+10:00",
"relpermalink": "/project/internal-project/",
"section": "project",
"summary": "An example of using the in-built project page.",
"tags": [
"Deep Learning"
],
"title": "Internal Project",
"type": "project"
},
{
"authors": [],
"categories": null,
"content": " Academic makes it easy to create a beautiful website for free using Markdown. Customize anything on your site with widgets, themes, and language packs.\nFollow our easy step by step guide to learn how to build your own free website with Academic. Check out the personal demo or the business demo of what you\u0026rsquo;ll get in less than 10 minutes.\n View the documentation Ask a question Request a feature or report a bug Updating? View the Update Guide and Release Notes Support development of Academic: Donate a coffee Become a backer on Patreon Decorate your laptop or journal with an Academic sticker Wear the T-shirt \nKey features:\n Easily manage various content including homepage, blog posts, publications, talks, and projects Extensible via color themes and widgets/plugins Write in Markdown for easy formatting and code highlighting, with LaTeX for mathematical expressions Social/academic network linking, Google Analytics, and Disqus comments Responsive and mobile friendly Simple and refreshing one page design Multilingual and easy to customize Color Themes Academic is available in different color themes and font themes.\n Ecosystem Academic Admin: An admin tool to import publications from BibTeX or import assets for an offline site\nInstall You can choose from one of the following four methods to install:\n one-click install using your web browser (recommended) install on your computer using Git with the Command Prompt/Terminal app install on your computer by downloading the ZIP files install on your computer with RStudio Quick install using your web browser Install Academic with Netlify Netlify will provide you with a customizable URL to access your new site On GitHub, go to your newly created academic-kickstart repository and edit config.toml to personalize your site. Shortly after saving the file, your site will automatically update Read the Quick Start Guide to learn how to add Markdown content. For inspiration, refer to the Markdown content which powers the Demo Install with Git Prerequisites:\n Download and install Git Download and install Hugo Fork the Academic Kickstart repository and clone your fork with Git:\ngit clone https://github.com/sourcethemes/academic-kickstart.git My_Website Note that if you forked Academic Kickstart, the above command should be edited to clone your fork, i.e. replace sourcethemes with your GitHub username.\n Initialize the theme:\ncd My_Website git submodule update --init --recursive Install with ZIP Download and extract Academic Kickstart Download and extract the Academic theme to the themes/academic/ folder from the above step Install with RStudio View the guide to installing Academic with RStudio\nQuick start If you installed on your computer, view your new website by running the following command:\nhugo server Now visit localhost:1313 and your new Academic powered website will appear. Otherwise, if using Netlify, they will provide you with your URL.\n Read the Quick Start Guide to learn how to add Markdown content, customize your site, and deploy it. For inspiration, refer to the Markdown content which powers the Demo\n Build your site by running the hugo command. Then host it for free using Github Pages or Netlify (refer to the first installation method). Alternatively, copy the generated public/ directory (by FTP, Rsync, etc.) to your production web server (such as a university\u0026rsquo;s hosting service).\n Updating Feel free to star the project on Github to help keep track of updates and check out the release notes prior to updating your site.\nBefore updating the framework, it is recommended to make a backup of your entire website directory (or at least your themes/academic directory) and record your current version number.\nBy default, Academic is installed as a Git submodule which can be updated by running the following command:\ngit submodule update --remote --merge Check out the update guide for full instructions and alternative methods.\nFeedback \u0026amp; Contributing Please use the issue tracker to let me know about any bugs or feature requests, or alternatively make a pull request.\nFor support, head over to the Hugo discussion forum.\nLicense Copyright 2016-present George Cushen.\nReleased under the MIT license.\n",
"date": 1461074400,
"expirydate": -62135596800,
"kind": "page",
"lang": "en",
"lastmod": 1515762000,
"objectID": "279b9966ca9cf3121ce924dca452bb1c",
"permalink": "https://shazanfar.github.io/post/getting-started/",
"publishdate": "2016-04-20T00:00:00+10:00",
"relpermalink": "/post/getting-started/",
"section": "post",
"summary": "Create a beautifully simple website or blog in under 10 minutes.",
"tags": [
"Academic"
],
"title": "Academic: the website designer for Hugo",
"type": "post"
},
{
"authors": [
"GA Cushen"
],
"categories": null,
"content": "More detail can easily be written here using Markdown and $\\rm \\LaTeX$ math code.\n",
"date": 1441029600,
"expirydate": -62135596800,
"kind": "page",
"lang": "en",
"lastmod": 1441029600,
"objectID": "d77fa4a74076ffcd7ca6c21cfc27a4b2",
"permalink": "https://shazanfar.github.io/publication/person-re-id/",
"publishdate": "2015-09-01T00:00:00+10:00",
"relpermalink": "/publication/person-re-id/",
"section": "publication",
"summary": "Person re-identification is a critical security task for recognizing a person across spatially disjoint sensors. Previous work can be computationally intensive and is mainly based on low-level cues extracted from RGB data and implemented on a PC for a fixed sensor network (such as traditional CCTV). We present a practical and efficient framework for mobile devices (such as smart phones and robots) where high-level semantic soft biometrics are extracted from RGB and depth data. By combining these cues, our approach attempts to provide robustness to noise, illumination, and minor variations in clothing. This mobile approach may be particularly useful for the identification of persons in areas ill-served by fixed sensors or for tasks where the sensor position and direction need to dynamically adapt to a target. Results on the BIWI dataset are preliminary but encouraging. Further evaluation and demonstration of the system will be available on our website.",
"tags": [],
"title": "A Person Re-Identification System For Mobile Devices",
"type": "publication"
},
{
"authors": null,
"categories": [
"R"
],
"content": "\rR Markdown\rThis is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see http://rmarkdown.rstudio.com.\nYou can embed an R code chunk like this:\nsummary(cars)\r## speed dist ## Min. : 4.0 Min. : 2.00 ## 1st Qu.:12.0 1st Qu.: 26.00 ## Median :15.0 Median : 36.00 ## Mean :15.4 Mean : 42.98 ## 3rd Qu.:19.0 3rd Qu.: 56.00 ## Max. :25.0 Max. :120.00\rfit \u0026lt;- lm(dist ~ speed, data = cars)\rfit\r## ## Call:\r## lm(formula = dist ~ speed, data = cars)\r## ## Coefficients:\r## (Intercept) speed ## -17.579 3.932\r\rIncluding Plots\rYou can also embed plots. See Figure 1 for example:\npar(mar = c(0, 1, 0, 1))\rpie(\rc(280, 60, 20),\rc(\u0026#39;Sky\u0026#39;, \u0026#39;Sunny side of pyramid\u0026#39;, \u0026#39;Shady side of pyramid\u0026#39;),\rcol = c(\u0026#39;#0292D8\u0026#39;, \u0026#39;#F7EA39\u0026#39;, \u0026#39;#C4B632\u0026#39;),\rinit.angle = -50, border = NA\r)\r\rFigure 1: A fancy pie chart.\r\r\r",
"date": 1437703994,
"expirydate": -62135596800,
"kind": "page",
"lang": "en",
"lastmod": 1437703994,
"objectID": "10065deaa3098b0da91b78b48d0efc71",
"permalink": "https://shazanfar.github.io/post/2015-07-23-r-rmarkdown/",
"publishdate": "2015-07-23T21:13:14-05:00",
"relpermalink": "/post/2015-07-23-r-rmarkdown/",
"section": "post",
"summary": "R Markdown\rThis is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see http://rmarkdown.rstudio.com.\nYou can embed an R code chunk like this:\nsummary(cars)\r## speed dist ## Min. : 4.0 Min. : 2.00 ## 1st Qu.:12.0 1st Qu.: 26.00 ## Median :15.0 Median : 36.00 ## Mean :15.4 Mean : 42.98 ## 3rd Qu.",
"tags": [
"R Markdown",
"plot",
"regression"
],
"title": "Hello R Markdown",
"type": "post"
},
{
"authors": [
"GA Cushen",
"MS Nixon"
],
"categories": null,
"content": "More detail can easily be written here using Markdown and $\\rm \\LaTeX$ math code.\n",
"date": 1372600800,
"expirydate": -62135596800,
"kind": "page",
"lang": "en",
"lastmod": 1372600800,
"objectID": "2b4d919e3cf73dfcd0063c88fe01cb00",
"permalink": "https://shazanfar.github.io/publication/clothing-search/",
"publishdate": "2013-07-01T00:00:00+10:00",
"relpermalink": "/publication/clothing-search/",
"section": "publication",
"summary": "We present a mobile visual clothing search system whereby a smart phone user can either choose a social networking photo or take a new photo of a person wearing clothing of interest and search for similar clothing in a retail database. From the query image, the person is detected, clothing is segmented, and clothing features are extracted and quantized. The information is sent from the phone client to a server, where the feature vector of the query image is used to retrieve similar clothing products from online databases. The phone's GPS location is used to re-rank results by retail store location. State of the art work focuses primarily on the recognition of a diverse range of clothing offline and pays little attention to practical applications. Evaluated on a challenging dataset, the system is relatively fast and achieves promising results.",
"tags": [],
"title": "Mobile visual clothing search",
"type": "publication"
},
{
"authors": null,
"categories": null,
"content": " Welcome to Slides Academic\nFeatures Efficiently write slides in Markdown 3-in-1: Create, Present, and Publish your slides Supports speaker notes Mobile friendly slides Controls Next: Right Arrow or Space Previous: Left Arrow Start: Home Finish: End Overview: Esc Speaker notes: S Fullscreen: F Zoom: Alt + Click PDF Export: E Code Highlighting Inline code: variable\nCode block:\nporridge = \u0026quot;blueberry\u0026quot; if porridge == \u0026quot;blueberry\u0026quot;: print(\u0026quot;Eating...\u0026quot;) Math In-line math: $x + y = z$\nBlock math:\n$$ f\\left( x \\right) = \\;\\frac{{2\\left( {x + 4} \\right)\\left( {x - 4} \\right)}}{{\\left( {x + 4} \\right)\\left( {x + 1} \\right)}} $$\nFragments Make content appear incrementally\n{{% fragment %}} One {{% /fragment %}} {{% fragment %}} **Two** {{% /fragment %}} {{% fragment %}} Three {{% /fragment %}} Press Space to play!\nOne Two Three \nA fragment can accept two optional parameters:\n class: use a custom style (requires definition in custom CSS) weight: sets the order in which a fragment appears Speaker Notes Add speaker notes to your presentation\n{{% speaker_note %}} - Only the speaker can read these notes - Press `S` key to view {{% /speaker_note %}} Press the S key to view the speaker notes!\n Only the speaker can read these notes Press S key to view Themes black: Black background, white text, blue links (default) white: White background, black text, blue links league: Gray background, white text, blue links beige: Beige background, dark text, brown links sky: Blue background, thin dark text, blue links night: Black background, thick white text, orange links serif: Cappuccino background, gray text, brown links simple: White background, black text, blue links solarized: Cream-colored background, dark green text, blue links Custom Slide Customize the slide style and background\n{{\u0026lt; slide background-image=\u0026quot;/img/boards.jpg\u0026quot; \u0026gt;}} {{\u0026lt; slide background-color=\u0026quot;#0000FF\u0026quot; \u0026gt;}} {{\u0026lt; slide class=\u0026quot;my-style\u0026quot; \u0026gt;}} Custom CSS Example Let\u0026rsquo;s make headers navy colored.\nCreate assets/css/reveal_custom.css with:\n.reveal section h1, .reveal section h2, .reveal section h3 { color: navy; } Questions? Ask\nDocumentation\n",
"date": -62135596800,
"expirydate": -62135596800,
"kind": "page",
"lang": "en",
"lastmod": -62135596800,
"objectID": "c2915ec5da95791851caafdcba9664af",
"permalink": "https://shazanfar.github.io/slides/example-slides/",
"publishdate": "0001-01-01T00:00:00Z",
"relpermalink": "/slides/example-slides/",
"section": "slides",
"summary": "Welcome to Slides Academic\nFeatures Efficiently write slides in Markdown 3-in-1: Create, Present, and Publish your slides Supports speaker notes Mobile friendly slides Controls Next: Right Arrow or Space Previous: Left Arrow Start: Home Finish: End Overview: Esc Speaker notes: S Fullscreen: F Zoom: Alt + Click PDF Export: E Code Highlighting Inline code: variable\nCode block:\nporridge = \u0026quot;blueberry\u0026quot; if porridge == \u0026quot;blueberry\u0026quot;: print(\u0026quot;Eating...\u0026quot;) Math In-line math: $x + y = z$",
"tags": null,
"title": "Slides",
"type": "slides"
}
]