This tool is mainly to parse through an MSA file (in the MEGA format) and give out a UI representation of the analysis of the mutations occurred.
- Still in the development phases. Would be putting out a link to the binaries once the complete development and testing is done.
2 widgets:
-
First (main) widget asks user to select MEGA file from desktop. It shows minimal information of how many mutations and the score.
-
- The main window lets you select the MEGA file from your file browser
- The main window lets you select the MEGA file from your file browser
-
- Once the file is selected it displays to you the details in the tabular form as shown.
- Once the file is selected it displays to you the details in the tabular form as shown.
-
Second window pops up when user double clicks the residue . It shows a detailed overview of the mutations.
-
- The following is an example when a residue is clicked from the first window.
- The following is an example when a residue is clicked from the first window.
-
- Residue range selection: This lets you select the range of residues that you particularly want to filter out. Note: Should click the Apply Filter button for it to be effective.
-
- Substitution Matrix score-threshold selection : The score as shown in the 4th column represents the cumulative summation of the scores of the mutations that have happened from the wild type.
This can be filtered => 1) All scores 2) Scores < 0 3) Scores < -1
- Substitution Matrix score-threshold selection : The score as shown in the 4th column represents the cumulative summation of the scores of the mutations that have happened from the wild type.
This can be filtered => 1) All scores 2) Scores < 0 3) Scores < -1
-
- Double-click on the residue from the detailed window will take you to the Uniprot page of the strain.
- Double-click on the residue from the detailed window will take you to the Uniprot page of the strain.
Uniprot Query :
- Shiva Kannan sssk2006@gmail.com