DESCRIPTION

Package: branchpointer
Type: Package
Title: Prediction of intronic splicing branchpoints
Version: 1.3.1
Date: 2017-10-25
Author: Beth Signal
Maintainer: Beth Signal <b.signal@garvan.org.au>
Description: Predicts branchpoint probability for sites in intronic branchpoint windows. Queries can be supplied as intronic regions; or to evaluate the effects of mutations, SNPs.
License: BSD_3_clause + file LICENSE
LazyData: FALSE
Depends:
    caret,
    R(>= 3.4)
Imports:
    plyr,
    kernlab,
    gbm,
    stringr,
    cowplot,
    ggplot2,
    biomaRt,
    Biostrings,
    parallel,
    utils,
    stats,
    BSgenome.Hsapiens.UCSC.hg38,
    rtracklayer,
    GenomicRanges,
    GenomeInfoDb,
    IRanges,
    S4Vectors,
    data.table
Suggests:
    knitr,
    BiocStyle
RoxygenNote: 6.0.1
VignetteBuilder: knitr
biocViews: Software, GenomeAnnotation, GenomicVariation, MotifAnnotation