From 8e638727ec11d61d69625057ec984740a1a0c381 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Sinan=20U=C4=9Fur=20Umu?= Date: Sun, 18 Feb 2024 13:53:06 +0100 Subject: [PATCH] v0.2.0.12 --- cellsnake/command_line.py | 2 +- docs/conf.py | 2 +- environment.yml | 26 +++++++++++++++++--------- setup.py | 2 +- 4 files changed, 20 insertions(+), 12 deletions(-) diff --git a/cellsnake/command_line.py b/cellsnake/command_line.py index 215f2bd..0146e13 100755 --- a/cellsnake/command_line.py +++ b/cellsnake/command_line.py @@ -36,7 +36,7 @@ __author__ = 'Sinan U. Umu' -__version__= '0.2.0.12rc2' +__version__= '0.2.0.12' __logo__=""" _ _ _ | || | | | diff --git a/docs/conf.py b/docs/conf.py index 14fd2d1..93b56ae 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -22,7 +22,7 @@ author = 'Sinan U. Umu' # The full version, including alpha/beta/rc tags -release = '0.2.0.12rc1' +release = '0.2.0.12' # -- General configuration --------------------------------------------------- diff --git a/environment.yml b/environment.yml index 7edad4c..f802ec0 100644 --- a/environment.yml +++ b/environment.yml @@ -13,17 +13,16 @@ dependencies: - pysam >=0.16.0.1 - python - regex >=2021.4.4 - - scipy + - scipy - snakemake >=7.22.0 - umap-learn - plotly - python-kaleido - - r-base==4.2.2 - - r-igraph==1.3.4 + - r-base==4.3 + # - r-base - r-ggraph==2.1.0 - r-seurat==4.3.0 - r-clustree==0.5.0 - - r-ggthemes - r-viridis - r-librarian - r-patchwork @@ -48,18 +47,20 @@ dependencies: - r-monocle3 #version 1.0.0 is the current - r-randomcolor - bioconductor-rhdf5lib - - bioconductor-clusterprofiler==4.6.0 - - bioconductor-scater==1.26.0 + #- bioconductor-clusterprofiler==4.6.0 + - bioconductor-clusterprofiler + #- bioconductor-scater==1.26.0 + - bioconductor-scater - bioconductor-limma - bioconductor-complexheatmap - bioconductor-topgo - bioconductor-org.hs.eg.db - - bioconductor-miqc + - bioconductor-miqc - bioconductor-rhdf5lib - bioconductor-singler - bioconductor-celldex - bioconductor-enhancedvolcano - - geos==3.11.1 + - geos - cmake - hdf5 - numba>=0.56.4 @@ -72,6 +73,13 @@ dependencies: - pip - scanpy>=1.9.1 - cython + - r-matrixstats==1.0.0 + - r-matrix==1.6_1.1 + #- r-ggthemes==4.2.4 + - r-ggthemes + #- r-gplots==3.1.3 + - r-gplots + - r-igraph # - pip: # - scipy>=1.6.2 # - regex>=2021.4.4 @@ -85,4 +93,4 @@ dependencies: # - snakemake>=7.22.0 # - umap-learn # - plotly -# - kaleido +# - kaleido \ No newline at end of file diff --git a/setup.py b/setup.py index afe8bc6..bd7936b 100644 --- a/setup.py +++ b/setup.py @@ -20,7 +20,7 @@ def run(self): setup( name="cellsnake", - version="0.2.0.12.rc2", + version="0.2.0.12", packages=find_packages(exclude=('tests*','testing*')), long_description=long_description, long_description_content_type="text/markdown",