diff --git a/counts.json b/counts.json index c27b8af..76b4253 100644 --- a/counts.json +++ b/counts.json @@ -2326,10 +2326,10 @@ "2csfastq_1csfastq": 1, "2ft": 2, "2ndscore": 1, - "2to3": 3842, - "2to3-3.10": 840, + "2to3": 3846, + "2to3-3.10": 842, "2to3-3.11": 286, - "2to3-3.12": 305, + "2to3-3.12": 307, "2to3-3.4": 5, "2to3-3.5": 103, "2to3-3.6": 344, @@ -2996,10 +2996,10 @@ "FastK": 2, "FastML_Wrapper.pl": 1, "FastRemap": 1, - "FastTree": 68, + "FastTree": 69, "FastTree-2.1.10.c": 25, "FastTree.c": 2, - "FastTreeMP": 65, + "FastTreeMP": 66, "FastaIndex": 2, "FastaIndex.py": 1, "FastaInfo": 1, @@ -3302,8 +3302,8 @@ "Joiner": 2, "JolyTree.sh": 1, "Juicebox_KR_normalization.sh": 1, - "JxrDecApp": 29, - "JxrEncApp": 29, + "JxrDecApp": 30, + "JxrEncApp": 30, "KAligner": 17, "KEGGCharter_prokaryotic_maps.txt": 2, "KO_database.keg": 1, @@ -3458,9 +3458,9 @@ "MZmine.bat": 1, "MaRaClusterAdapter": 2, "Maaslin2.R": 1, - "Magick++-config": 76, - "MagickCore-config": 76, - "MagickWand-config": 76, + "Magick++-config": 77, + "MagickCore-config": 77, + "MagickWand-config": 77, "Magphi": 1, "MakeBootstraps.py": 1, "MakeDNADatabase.py": 2, @@ -3966,7 +3966,7 @@ "QueueingSystem.dll": 1, "QuickDeconvolution": 1, "QuickSNP.py": 1, - "R": 4694, + "R": 4713, "R-scape": 2, "R-scape-sim": 2, "R-scape-sim-nobps": 2, @@ -4305,7 +4305,7 @@ "Rprof": 1, "Rsample": 5, "Rsample-smp": 5, - "Rscript": 4695, + "Rscript": 4714, "RunTHetA.py": 1, "Run_abSENSE.py": 1, "SAGE": 1, @@ -4543,7 +4543,7 @@ "SvPrep": 1, "SvmTheoreticalSpectrumGeneratorTrainer": 2, "SvtAv1DecApp": 13, - "SvtAv1EncApp": 21, + "SvtAv1EncApp": 23, "Sweave": 1, "SweepFinder2": 1, "SymmetryTester": 3, @@ -5137,7 +5137,7 @@ "acdvalid": 27, "ace.pl": 56, "ace2contig": 2, - "ace2sam": 538, + "ace2sam": 539, "aci": 1, "aclocal.bak": 11, "acmbuild": 1, @@ -5155,8 +5155,8 @@ "actc": 1, "action_report.py": 2, "activate": 1343, - "activate-global-python-argcomplete": 351, - "acyclic": 204, + "activate-global-python-argcomplete": 362, + "acyclic": 206, "adVNTR-Filtering": 1, "ada_model_builder_ntChange.R": 1, "ada_model_predictor.R": 1, @@ -5236,7 +5236,7 @@ "addtit.pl": 2, "adf_checker.pl": 1, "adhocfilelist": 1, - "adig": 4654, + "adig": 4676, "adjustPeakFile.pl": 5, "adjustRedunGroupFile.pl": 5, "adjustScanRankerScoreByGroup": 2, @@ -5353,7 +5353,7 @@ "agrvate": 1, "agtsampleinforw.dll": 2, "ahmm-s": 1, - "ahost": 4654, + "ahost": 4676, "airr-tools": 5, "akita_data.py": 1, "akita_data_read.py": 1, @@ -5375,6 +5375,7 @@ "albatradis-presence_absence": 1, "albatradis-scatterplot": 1, "alc": 1, + "alchemy": 1, "alder": 1, "alembic": 8, "alen": 1, @@ -5489,6 +5490,7 @@ "alleles": 1, "allelicmeth": 1, "alleyoop": 1, + "allhic": 1, "allneeded": 1, "allo": 1, "alltoall.sh": 28, @@ -5568,7 +5570,7 @@ "analyse_blast_outputs.pl": 1, "analyse_loci_list.pl": 1, "analysis_methods.py": 1, - "analyze": 3, + "analyze": 4, "analyze-build": 1, "analyze-read-depth": 2, "analyzeBest": 3, @@ -5605,7 +5607,7 @@ "androiddeployqt6": 3, "anglerfish": 1, "angsd": 1, - "animate": 76, + "animate": 77, "anise": 1, "ann_exons_all.pl": 1, "ann_exons_ens.pl": 7, @@ -5630,12 +5632,13 @@ "ann_pfam_www.pl": 7, "ann_to_diploid": 1, "ann_upfeats_pfam_www_e.pl": 7, + "anneal": 1, "annembed": 1, "annonars": 1, "annosine2": 1, - "annot-tsv": 64, + "annot-tsv": 65, "annot_blast_btop2.pl": 7, - "annotate": 260, + "annotate": 262, "annotate-partitions.py": 7, "annotate.py": 39, "annotate.pyc": 1, @@ -5860,8 +5863,8 @@ "anvi-upgrade": 2, "any2fasta": 22, "aodp": 1, - "aomdec": 29, - "aomenc": 29, + "aomdec": 31, + "aomenc": 31, "api_binding_site": 1, "apirst2html.py": 1, "aplanat": 2, @@ -5965,6 +5968,7 @@ "arborator": 1, "arboreto_with_multiprocessing.py": 1, "arcasHLA": 1, + "arcedit": 1, "archer": 1, "architeuthis": 1, "archive-ncbinlp": 41, @@ -5985,7 +5989,7 @@ "argparse2tool_check_path": 1, "args2slice": 41, "args_oap": 1, - "aria2c": 29, + "aria2c": 30, "ariba": 3, "arlatex": 1, "array-as-vcf": 1, @@ -6028,12 +6032,12 @@ "ascli": 3, "ascp": 3, "ascp_download.sh": 1, - "ase": 4, - "ase-build": 4, - "ase-db": 4, - "ase-gui": 4, - "ase-info": 4, - "ase-run": 4, + "ase": 5, + "ase-build": 5, + "ase-db": 5, + "ase-gui": 5, + "ase-info": 5, + "ase-run": 5, "aserver": 471, "asession": 3, "asgal": 1, @@ -6167,7 +6171,7 @@ "autometa-taxonomy-majority-vote": 2, "autometa-unclustered-recruitment": 2, "autometa-update-databases": 2, - "autopoint": 5329, + "autopoint": 5330, "autoreconf.bak": 10, "autoscan.bak": 10, "autoupdate.bak": 10, @@ -6181,7 +6185,7 @@ "avgEpsGrid": 2, "aviary": 1, "avro": 13, - "awk": 113, + "awk": 114, "aws": 6, "aws-create-elastic-blast-janitor-role.sh": 1, "aws-delete-elastic-blast-janitor-role.sh": 1, @@ -6496,6 +6500,7 @@ "bank2sam": 2, "bank2scaff": 2, "banner": 1, + "bar": 1, "bar_chart.py": 1, "bar_pbsa.py": 4, "baralign.sh": 1, @@ -6655,7 +6660,7 @@ "bcftools": 185, "bcgTree.pl": 1, "bcl_to_fastq": 1, - "bcomps": 204, + "bcomps": 206, "bcool": 2, "bcov": 1, "bcov2-strip": 1, @@ -6669,7 +6674,7 @@ "bdei_u": 1, "bdf2gdfont.PLS": 5, "bdf2gdfont.pl": 92, - "bdftogd": 246, + "bdftogd": 248, "bdss_ci_paths": 1, "beacon": 1, "beacon2-import": 1, @@ -6787,7 +6792,7 @@ "bgenFileInfo": 1, "bgenix": 1, "bgreat": 4, - "bgzip": 740, + "bgzip": 741, "bgzip.pl": 4, "bgziptabix": 32, "bialign.py": 1, @@ -6930,7 +6935,7 @@ "biotree": 1, "biovalidator": 1, "biowdl-input-converter": 1, - "biox": 1, + "biox": 2, "biox-workflow.pl": 3, "bipartition": 5, "bipartition-smp": 5, @@ -6981,7 +6986,7 @@ "blast2lca": 1, "blast2rma": 1, "blast2sam": 1, - "blast2sam.pl": 538, + "blast2sam.pl": 539, "blastMapAnalyzer2.pl": 1, "blastMining": 1, "blastMining_lca.sh": 1, @@ -7107,7 +7112,7 @@ "bowtie2-inspect-l": 116, "bowtie2-inspect-s": 116, "bowtie2_stuff.py": 2, - "bowtie2sam.pl": 538, + "bowtie2sam.pl": 539, "bowtie_PE_separate_then_join.pl": 1, "bowtie_mapper.sh": 1, "box": 1, @@ -7274,7 +7279,7 @@ "broad_utils.py": 1, "brockman_pipeline": 1, "brooklyn_plot": 1, - "brotli": 490, + "brotli": 491, "browse": 18, "bs_call": 2, "bs_seeker2-align.py": 1, @@ -7379,7 +7384,7 @@ "bundlelinks": 2, "bundler": 19, "bunwarpj": 4, - "bunzip2": 6869, + "bunzip2": 6894, "burden_test_vase": 1, "burst_linux_DB12": 1, "burst_linux_DB15": 1, @@ -7433,16 +7438,16 @@ "bxStats.py": 1, "bxcl_seqqc": 1, "bxtools": 1, - "bzcat": 6869, - "bzcmp": 6869, - "bzdiff": 6869, - "bzegrep": 6869, - "bzfgrep": 6869, - "bzgrep": 6869, - "bzip2": 6870, - "bzip2recover": 6869, - "bzless": 6869, - "bzmore": 6869, + "bzcat": 6894, + "bzcmp": 6894, + "bzdiff": 6894, + "bzegrep": 6894, + "bzfgrep": 6894, + "bzgrep": 6894, + "bzip2": 6895, + "bzip2recover": 6894, + "bzless": 6894, + "bzmore": 6894, "c++": 5, "c++filt": 8, "c-index-test": 8, @@ -7459,7 +7464,7 @@ "cPecanLibTests": 1, "cPecanModifyHmm": 1, "cPecanRealign": 1, - "c_rehash": 8014, + "c_rehash": 8039, "ca2ace.pl": 3, "ca2ctg": 2, "ca2mates": 2, @@ -7536,7 +7541,7 @@ "cagecatProcess.py": 1, "cagee": 1, "cai": 28, - "cairo-trace": 5198, + "cairo-trace": 5218, "cairosvg": 6, "cal": 13, "calD": 1, @@ -7641,7 +7646,7 @@ "capnpc-cython": 1, "capost2gnu": 1, "capri_eval": 1, - "captoinfo": 7945, + "captoinfo": 7970, "captus_assembly": 1, "caqc.pl": 3, "caqc_help.ini": 3, @@ -7732,7 +7737,7 @@ "cbc": 113, "cbi": 1, "cblaster": 1, - "cbrunsli": 29, + "cbrunsli": 30, "cc": 5, "cc.bin": 2, "ccache-swig": 13, @@ -7748,7 +7753,7 @@ "ccmake": 12, "ccne-acc": 1, "ccne-fast": 1, - "ccomps": 204, + "ccomps": 206, "cconfig": 1, "ccphylo": 2, "ccqtl": 1, @@ -7898,7 +7903,7 @@ "chaos": 27, "chap": 1, "characterizer.pl": 1, - "chardetect": 287, + "chardetect": 288, "charfreq": 1, "charge": 27, "charmmlipid2amber.py": 7, @@ -7943,6 +7948,7 @@ "check_dependencies.sh": 1, "check_fasta_insdc.py": 1, "check_for_embedded_fasta_headers.py": 2, + "check_for_update.py": 1, "check_gff_for_internal_stops.py": 2, "check_id_map.py": 1, "check_index_consistency": 1, @@ -7980,7 +7986,7 @@ "checkqc-ws": 1, "checkstrand.sh": 1, "checksub": 1, - "checksum-profile": 7, + "checksum-profile": 8, "checktrans": 27, "checkv": 3, "cheetah": 10, @@ -8067,7 +8073,7 @@ "circle_map++": 1, "circledetector.py": 1, "circminer": 1, - "circo": 204, + "circo": 206, "circos": 22, "circos.exe": 22, "circtools": 1, @@ -8092,7 +8098,7 @@ "cit2pmid": 41, "civicpy": 1, "cjk-gs-integrate": 1, - "cjpeg": 5889, + "cjpeg": 5909, "ckeygen": 1, "cksum": 86, "claMLST": 1, @@ -8170,10 +8176,10 @@ "classification_predict": 1, "classifier": 5, "classifier.jar": 2, - "classifier_report.py": 1, - "classify": 1, + "classifier_report.py": 2, + "classify": 2, "classify-ali.pl": 1, - "classify.py": 1, + "classify.py": 2, "classifyMates": 3, "classifyMatesApply": 3, "classifyMatesPairwise": 3, @@ -8203,7 +8209,7 @@ "cleanup-coverage.py": 2, "cleanup-stale-gcp-resources.py": 1, "cleanup.py": 1, - "clear": 7945, + "clear": 7970, "clearCNV": 1, "clearcut": 1, "cleric": 1, @@ -8232,7 +8238,7 @@ "clique": 10, "cliquesnv": 1, "clk": 2, - "cllayerinfo": 3, + "cllayerinfo": 4, "clm": 27, "clmformat": 23, "cloci": 1, @@ -8295,7 +8301,7 @@ "clustalw2": 81, "clustalw2fasta": 13, "clustalw2phylip": 13, - "cluster": 209, + "cluster": 211, "cluster-picker": 2, "cluster2bed.pl": 5, "cluster2bedgraph.pl": 5, @@ -8527,7 +8533,7 @@ "compactors": 1, "compalign": 4, "compalignp": 1, - "compare": 82, + "compare": 83, "compare-alignments.py": 1, "compare-ddbj": 1, "compare-matrices-quick": 1, @@ -8581,7 +8587,7 @@ "compileSpliceCands": 13, "compile_STARE_Linux.sh": 1, "compile_STARE_macOS.sh": 1, - "compile_et": 5951, + "compile_et": 5973, "compiled_table.py": 1, "compleasm": 1, "complementBed": 281, @@ -8592,7 +8598,7 @@ "completion.zsh": 1, "complexsv.py": 1, "compomics.sh": 1, - "composite": 76, + "composite": 77, "composition": 1, "compositional_methods.py": 1, "compound_identification.py": 2, @@ -8690,7 +8696,7 @@ "confindr_database_setup": 2, "conformers": 1, "conifer": 1, - "conjure": 76, + "conjure": 77, "connect.pl": 1, "connect_graph": 1, "connect_subcontigs_GMcloser2.pl": 1, @@ -8758,12 +8764,12 @@ "conus_train": 7, "conv-template": 17, "convbkmk": 1, - "convert": 77, - "convert-caffe2-to-onnx": 60, + "convert": 78, + "convert-caffe2-to-onnx": 62, "convert-ccds-to-bed": 3, "convert-fasta-to-v2.pl": 3, "convert-mirdeep2-fasta.py": 1, - "convert-onnx-to-caffe2": 60, + "convert-onnx-to-caffe2": 62, "convert-readcount-file.py": 1, "convert-regions": 2, "convert-sam-for-rsem": 1, @@ -8895,7 +8901,7 @@ "core_diversity_analyses.py": 1, "core_methods.py": 1, "core_overlap_plot.py": 1, - "corelist": 1752, + "corelist": 1754, "corepack": 12, "coreprocess.pl": 3, "coresnpfilter": 1, @@ -8923,6 +8929,7 @@ "correct_with_k_unitigs_fast.pl": 1, "corrected_insertsize.pl": 1, "corrector": 3, + "correlate": 1, "correlate_counts.py": 1, "correlation": 1, "correlation_matrix": 1, @@ -9003,7 +9010,7 @@ "cp2k_run": 1, "cp2k_shell.ssmp": 1, "cpack": 12, - "cpan": 1752, + "cpan": 1754, "cpancover": 6, "cpanm": 245, "cpat.py": 1, @@ -9145,6 +9152,7 @@ "crispritz.py": 2, "crisprme.py": 1, "crisprtools": 1, + "critical": 1, "crlupdate": 16, "crnsimulator": 2, "croco-0.6-config": 8, @@ -9173,6 +9181,7 @@ "cryptkeeper": 1, "crypto_typer": 1, "cryptogenotyper": 1, + "crystal": 1, "cs": 3, "cs2bs_assembly": 1, "cs2cs": 47, @@ -9198,10 +9207,10 @@ "cstacks": 1, "cstag": 1, "cstranslate": 4, - "csv-import": 77, + "csv-import": 78, "csv2kml": 1, "csv2loom": 1, - "csv2rdf": 34, + "csv2rdf": 35, "csv2tsv": 1, "csv2xlsx": 1, "csv2xml": 230, @@ -9252,8 +9261,8 @@ "curate_spatial_data": 1, "curate_universe": 1, "curesim": 2, - "curl": 5163, - "curl-config": 6049, + "curl": 5182, + "curl-config": 6071, "curlywhirly": 1, "curve_keygen": 73, "cusp": 27, @@ -9304,7 +9313,7 @@ "cw_get_uniprot_data": 1, "cw_query_database": 1, "cweave": 1, - "cwebp": 357, + "cwebp": 358, "cwl-cite-extract": 1, "cwl-docker-extract": 1, "cwl-explode": 1, @@ -9386,7 +9395,7 @@ "dask-worker": 52, "dask_utils.py": 1, "data.py": 1, - "data_classes.py": 1, + "data_classes.py": 2, "data_filter": 1, "data_generator.py": 1, "data_generator_h5.py": 1, @@ -9410,14 +9419,14 @@ "dataset.py": 2, "dataset_manager.py": 1, "datasets": 3, - "datasets-cli": 5, + "datasets-cli": 6, "datashader": 3, "datatool": 352, "datavzrd": 2, "date": 86, "datma.py": 1, "datma_seq.py": 1, - "dav1d": 22, + "dav1d": 24, "davix-cp": 1, "davix-get": 1, "davix-http": 1, @@ -9473,7 +9482,7 @@ "dbkit_create.py": 1, "dbkit_extract.py": 1, "dbkit_merge.py": 1, - "dbrunsli": 29, + "dbrunsli": 30, "dbscan": 1, "dbsnp_iit": 12, "dbtell": 27, @@ -9581,7 +9590,7 @@ "debuginfod": 1, "debuginfod-find": 1, "debugpy": 3, - "dec265": 1, + "dec265": 2, "dec2ctime.pl": 1, "decOM": 1, "decOM-CV": 1, @@ -9648,7 +9657,7 @@ "del01_delete_db_entries.py": 1, "del_from_prfl.pl": 15, "del_parse.py": 1, - "delaunay": 149, + "delaunay": 151, "deldup": 1, "delete_db": 1, "deletion_profile.py": 3, @@ -9713,7 +9722,7 @@ "depth_calc.py": 1, "depth_estim_from_vcf.sh": 1, "depythontex": 1, - "derb": 5952, + "derb": 5972, "derep_stuff.py": 2, "deripcal": 1, "derna": 1, @@ -9810,16 +9819,17 @@ "differential_abundance.py": 1, "differential_md_score": 1, "differential_modification": 1, - "diffimg": 147, + "diffimg": 149, "difflist2bed.pl": 5, "diffmat_precalc": 1, "diffseq": 27, "diffsplice_fishers_exact": 1, + "diffuse": 1, "dig2": 1, "digestdb": 2, "digestiflow-cli": 1, "digestiflow-demux": 1, - "dijkstra": 204, + "dijkstra": 206, "dimacs-solver": 4, "dimacs-to-lgf": 4, "dimspy": 1, @@ -9890,7 +9900,7 @@ "disentangle_organelle_assembly.py": 1, "diskbench.sh": 31, "dispatch_srvr": 3, - "display": 76, + "display": 77, "display_rate_matrix": 2, "dissimilarity_mtx_stats.py": 1, "dist": 2, @@ -9901,6 +9911,7 @@ "distance_matrix_from_mapping.py": 1, "distance_stuff.py": 2, "distances.smk": 1, + "distgeom": 1, "distle": 1, "distmat": 28, "distribution_features.py": 2, @@ -9921,7 +9932,7 @@ "django-admin": 4, "django-admin.py": 3, "django-admin.pyc": 1, - "djpeg": 5889, + "djpeg": 5909, "dkfzbiasfilter.py": 1, "dkfzbiasfilter_summarize.py": 1, "dlcoal_to_dlcpar": 1, @@ -9994,6 +10005,7 @@ "docker_test_script": 1, "docking_py": 1, "docopt.py": 1, + "document": 1, "docutils": 93, "dodge": 1, "dodgedists": 1, @@ -10017,11 +10029,11 @@ "dosage_score": 1, "dosage_score_plot": 1, "dosimple": 1, - "dot": 204, + "dot": 206, "dot2ct": 5, - "dot2gxl": 204, + "dot2gxl": 206, "dot2pp": 4, - "dot_builtins": 204, + "dot_builtins": 206, "dotenv": 9, "dotmatcher": 27, "dotpath": 27, @@ -10290,7 +10302,7 @@ "dvi2fax": 1, "dviasm": 1, "dvicopy": 1, - "dvipdf": 106, + "dvipdf": 107, "dvipdfm": 1, "dvipdfmx": 1, "dvipdft": 1, @@ -10298,7 +10310,7 @@ "dvitomp": 1, "dvitype": 1, "dvorfs": 1, - "dwebp": 357, + "dwebp": 358, "dwgsim": 5, "dwgsim_eval": 5, "dwgsim_eval_plot.py": 1, @@ -10330,6 +10342,7 @@ "dynalign-smp": 5, "dynalign_ii": 5, "dynalign_ii-smp": 5, + "dynamic": 1, "dynamodb_dump": 29, "dynamodb_load": 29, "dysgu": 1, @@ -10392,7 +10405,7 @@ "edgembar": 1, "edgembar-WriteGraphHtml.py": 1, "edgembar-amber2dats.py": 1, - "edgepaint": 204, + "edgepaint": 206, "edgeredef": 5, "edialign": 27, "edirect.pl": 88, @@ -10431,7 +10444,7 @@ "eigenstrat_rename_snps": 1, "eigenstrat_snp_coverage": 1, "einfo": 318, - "einsi": 113, + "einsi": 114, "einverted": 27, "eject": 13, "eklipseHeader.png": 1, @@ -10447,11 +10460,11 @@ "elandresult2bed": 1, "elastic-blast": 1, "elasticluster": 1, - "elasticurl": 68, - "elasticurl_cpp": 68, - "elastipubsub": 68, - "elastipubsub5": 57, - "elastishadow": 7, + "elasticurl": 69, + "elasticurl_cpp": 69, + "elastipubsub": 69, + "elastipubsub5": 58, + "elastishadow": 8, "elb-cost.py": 1, "elbadmin": 29, "elector": 1, @@ -10497,8 +10510,8 @@ "enano": 1, "enasearch": 1, "enc": 1, - "enc2xs": 1752, - "encguess": 1752, + "enc2xs": 1754, + "encguess": 1754, "encode2var": 1, "encode_dir": 1, "encode_exclude_loci": 1, @@ -10547,7 +10560,7 @@ "environment.yml": 1, "envpath": 3, "envset.cmd": 1, - "envsubst": 5329, + "envsubst": 5330, "eoulsan.sh": 1, "epa-ng": 4, "epestfind": 27, @@ -10567,7 +10580,7 @@ "eprimer3": 27, "eprimer32": 27, "eproxy": 88, - "eps2eps": 106, + "eps2eps": 107, "epsg_tr.py": 4, "epspdf": 1, "epspdftk": 1, @@ -10787,7 +10800,7 @@ "exporTPP.pl": 2, "export-itol.pl": 1, "export2graphlan.py": 1, - "export2sam.pl": 538, + "export2sam.pl": 539, "exportTools.sh": 1, "export_mitochondrial_contigs.py": 1, "export_norm_data": 1, @@ -10954,7 +10967,7 @@ "ezez4makefile_v4.pl": 1, "ezez4qsub_vx1.pl": 1, "ezez_vx1.pl": 1, - "f2py": 2199, + "f2py": 2205, "f2py2": 136, "f2py2.7": 136, "f2py3": 1604, @@ -10994,7 +11007,7 @@ "faToVcf": 3, "fa_coords": 12, "fab": 2, - "fabric": 2, + "fabric": 3, "factor": 96, "fade": 1, "fadvise": 1, @@ -11082,7 +11095,7 @@ "fasta-most": 13, "fasta-nr": 4, "fasta-re-match": 8, - "fasta-sanitize.pl": 336, + "fasta-sanitize.pl": 337, "fasta-shuffle-letters": 13, "fasta-splitter": 1, "fasta-strip-identifier": 2, @@ -11389,7 +11402,7 @@ "fastspar_pvalues": 2, "fastspar_reduce": 2, "fasttext": 1, - "fasttree": 72, + "fasttree": 73, "fasttreeMP": 7, "fasttree_pipeline": 1, "fastuniq": 2, @@ -11419,19 +11432,19 @@ "fasxl": 2, "fathom": 2, "favites_lite.py": 1, - "fax2ps": 5359, - "fax2tiff": 5359, + "fax2ps": 5379, + "fax2tiff": 5379, "fba": 1, "fc": 1, - "fc-cache": 5402, - "fc-cat": 5402, - "fc-conflist": 4919, - "fc-list": 5402, - "fc-match": 5402, - "fc-pattern": 5402, - "fc-query": 5402, - "fc-scan": 5402, - "fc-validate": 5402, + "fc-cache": 5422, + "fc-cat": 5422, + "fc-conflist": 4939, + "fc-list": 5422, + "fc-match": 5422, + "fc-pattern": 5422, + "fc-query": 5422, + "fc-scan": 5422, + "fc-validate": 5422, "fc_actg_coordinate": 1, "fc_calc_cutoff": 1, "fc_consensus": 1, @@ -11487,7 +11500,7 @@ "fdollop": 2, "fdolmove": 2, "fdolpenny": 2, - "fdp": 204, + "fdp": 206, "fdr_cutoff.py": 1, "fdrawgram": 2, "fdrawtree": 2, @@ -11546,16 +11559,16 @@ "ffindex_resume.pl": 5, "ffindex_unpack": 4, "ffitch": 2, - "ffmpeg": 12, - "ffprobe": 12, + "ffmpeg": 13, + "ffprobe": 13, "ffq": 1, "ffreqboot": 2, - "fftns": 113, - "fftnsi": 113, - "fftw-wisdom": 170, - "fftw-wisdom-to-conf": 170, - "fftwf-wisdom": 170, - "fftwl-wisdom": 170, + "fftns": 114, + "fftnsi": 114, + "fftw-wisdom": 171, + "fftw-wisdom-to-conf": 171, + "fftwf-wisdom": 171, + "fftwl-wisdom": 171, "fgap.m": 1, "fgbio": 3, "fgendist": 2, @@ -11947,7 +11960,7 @@ "flapjack": 1, "flash": 16, "flash2": 5, - "flask": 50, + "flask": 51, "flatc": 17, "flattenGTF": 6, "flex": 5, @@ -12008,12 +12021,12 @@ "fold": 86, "foldFasta.pl": 1, "foldcomp": 1, - "foldmason": 1, - "foldseek": 3, + "foldmason": 2, + "foldseek": 4, "font-awesome-to-png": 2, "font2c": 3, "fontinst": 1, - "fonttools": 464, + "fonttools": 465, "fop": 1, "forceOneClusterPerPairMem.py": 1, "forest.py": 1, @@ -12105,7 +12118,8 @@ "freec": 1, "freec2bed.pl": 1, "freec2circos.pl": 1, - "freetype-config": 5952, + "freefix": 1, + "freetype-config": 5972, "freeze_graph": 25, "freq2group.pl": 5, "frequency.py": 1, @@ -12119,7 +12133,7 @@ "frg2fastq": 2, "frg2ta": 2, "frgs2clones": 3, - "fribidi": 4057, + "fribidi": 4077, "frictionless": 1, "frm_admin": 1, "frm_purged": 1, @@ -12527,7 +12541,7 @@ "gatk3": 5, "gatk3-register": 3, "gatk_to_gvcf": 1, - "gawk": 113, + "gawk": 114, "gawk-4.1.3": 1, "gawk-4.2.1": 2, "gawk-5.0.0": 1, @@ -12535,8 +12549,8 @@ "gawk-5.1.0": 64, "gawk-5.2.2": 1, "gawk-5.3.0": 35, - "gawk-5.3.1": 3, - "gawkbug": 39, + "gawk-5.3.1": 4, + "gawkbug": 40, "gb2fas": 1, "gb2fasta": 1, "gbSmallDNA2gff.pl": 15, @@ -12557,7 +12571,7 @@ "gbrowse.conf": 15, "gbrowseold2gff3.pl": 15, "gbsx": 1, - "gc": 206, + "gc": 208, "gc-assembler": 1, "gc-content-plot": 2, "gc3s": 1, @@ -12593,9 +12607,10 @@ "gctb": 1, "gctx2gct": 2, "gcv": 2, - "gd2copypal": 246, - "gd2togif": 246, - "gd2topng": 246, + "gd2copypal": 248, + "gd2togif": 248, + "gd2topng": 248, + "gda": 1, "gdal-config": 40, "gdal2tiles": 1, "gdal2tiles.py": 6, @@ -12664,24 +12679,24 @@ "gdbus": 1670, "gdbus-codegen": 1668, "gdc-client": 1, - "gdcmpgif": 246, + "gdcmpgif": 248, "gddiag": 22, "gdi": 1, "gdiff": 1, "gdistribution": 1, - "gdk-pixbuf-csource": 218, - "gdk-pixbuf-pixdata": 218, - "gdk-pixbuf-query-loaders": 218, - "gdk-pixbuf-thumbnailer": 217, + "gdk-pixbuf-csource": 220, + "gdk-pixbuf-pixdata": 220, + "gdk-pixbuf-query-loaders": 220, + "gdk-pixbuf-thumbnailer": 219, "gdlib-config": 44, "gdmicro": 1, "gdown": 4, - "gdparttopng": 246, + "gdparttopng": 248, "gdrive": 1, "gdsctools_anova": 1, "gdsctools_regression": 1, "gdtools": 1, - "gdtopng": 246, + "gdtopng": 248, "gecco": 2, "geckodriver": 2, "geecee": 27, @@ -12719,17 +12734,17 @@ "genbank_to": 1, "genblastG": 1, "genbox": 1, - "genbrk": 5952, - "gencfu": 5952, + "genbrk": 5972, + "gencfu": 5972, "genclust": 1, - "gencnval": 5952, + "gencnval": 5972, "gencode_extract_relevant_gtf_exons.pl": 1, "gencode_singleton_unit_test": 5, "genconf": 1, "gencore": 1, "gencove": 1, "gendb": 13, - "gendict": 5952, + "gendict": 5972, "gendist": 10, "gene2protein.db3": 2, "gene2range": 218, @@ -12893,11 +12908,13 @@ "genotypeSummary": 32, "genotyper": 3, "genotyper_data_classes.py": 1, + "genotyper_utilities": 1, + "genotyper_utilities.py": 1, "genotyphi": 1, "genotyphi.py": 1, "genpcz": 2, "genpept2gsi.pl": 2, - "genrb": 5952, + "genrb": 5972, "genreflex": 3, "genremdinputs.py": 7, "genrestr": 4, @@ -13052,7 +13069,7 @@ "get_general_stats.pl": 1, "get_genes_table.pl": 3, "get_genomes_info.py": 1, - "get_gprof": 18, + "get_gprof": 20, "get_homologues-est.pl": 1, "get_homologues.pl": 1, "get_homology.pl": 1, @@ -13066,7 +13083,7 @@ "get_mirdeep2_precursors.pl": 1, "get_mnv": 1, "get_mpilup_from_id_list.py": 2, - "get_objgraph": 68, + "get_objgraph": 70, "get_objgraph.py": 1, "get_obsolete_term_id_vs_def_in_go.pl": 1, "get_obsolete_term_id_vs_name_in_go.pl": 1, @@ -13176,9 +13193,9 @@ "getscu": 1, "getsize": 13, "getsnvfreq_by_interval": 1, - "gettext": 5329, - "gettext.sh": 5329, - "gettextize": 5329, + "gettext": 5330, + "gettext.sh": 5330, + "gettextize": 5330, "getu0.X86_64.LINUX": 1, "getu0.X86_64.SUNOS": 1, "getuniqgenomealign": 1, @@ -13258,7 +13275,7 @@ "gffutils-cli": 34, "gfinisher": 1, "gflags2man.py": 3, - "gflags_completions.sh": 86, + "gflags_completions.sh": 87, "gfmix": 1, "gfmix.yaml": 1, "gfmix_mammal.smk": 1, @@ -13292,16 +13309,16 @@ "gi2taxid.sh": 31, "gid-taxid": 1, "gie": 44, - "gif2h5": 583, - "gif2hdf": 130, - "gif2rgb": 783, + "gif2h5": 585, + "gif2hdf": 131, + "gif2rgb": 785, "gif2tiff": 189, - "gif2webp": 357, - "gifbuild": 783, - "gifclrmp": 783, + "gif2webp": 358, + "gifbuild": 785, + "gifclrmp": 785, "gifecho": 39, "giffilter": 25, - "giffix": 783, + "giffix": 785, "gifinto": 39, "gifmaker.py": 20, "gifrop": 1, @@ -13312,15 +13329,15 @@ "gifrop_pannotate.R": 1, "gifrop_plots.R": 1, "gifsponge": 25, - "giftext": 783, - "giftogd2": 246, - "giftool": 783, + "giftext": 785, + "giftogd2": 248, + "giftool": 785, "gigrnd.py": 1, "gil2bin": 1, "gimbleprep": 1, "gimme": 4, "gimme_taxa.py": 10, - "ginsi": 113, + "ginsi": 114, "gio": 1558, "gio-launch-desktop": 668, "gio-querymodules": 1670, @@ -13367,7 +13384,7 @@ "glnexus_cli": 1, "glob_res.pl": 1, "global.json": 1, - "glpsol": 255, + "glpsol": 258, "glsearch36": 7, "gm": 2, "gm2ranges": 41, @@ -13397,7 +13414,7 @@ "gmk_m3": 2, "gmk_msh": 2, "gmk_ub2": 2, - "gml2gv": 204, + "gml2gv": 206, "gmsc-mapper": 1, "gmt2regions": 1, "gmtkDMLPtrain": 4, @@ -13605,7 +13622,7 @@ "graphmap": 2, "graphmap2": 1, "graphmb": 1, - "graphml2gv": 204, + "graphml2gv": 206, "graphtyper": 1, "graphunzip.py": 1, "grappaResultParser": 1, @@ -13675,20 +13692,20 @@ "grouperThreads2.32": 1, "groups": 86, "grow-readbank": 2, - "grpc_cpp_plugin": 169, - "grpc_csharp_plugin": 169, - "grpc_node_plugin": 169, - "grpc_objective_c_plugin": 169, - "grpc_php_plugin": 169, - "grpc_python_plugin": 169, - "grpc_ruby_plugin": 169, + "grpc_cpp_plugin": 170, + "grpc_csharp_plugin": 170, + "grpc_node_plugin": 170, + "grpc_objective_c_plugin": 170, + "grpc_php_plugin": 170, + "grpc_python_plugin": 170, + "grpc_ruby_plugin": 170, "grz-cli": 1, - "gs": 106, - "gsbj": 106, + "gs": 107, + "gsbj": 107, "gscat": 2, "gsd": 6, - "gsdj": 106, - "gsdj500": 106, + "gsdj": 107, + "gsdj500": 107, "gsea": 1, "gsea-cli": 1, "gseapy": 6, @@ -13696,11 +13713,11 @@ "gsf": 1, "gsf-office-thumbnailer": 1, "gsf-vba-dump": 1, - "gsl-config": 4596, - "gsl-histogram": 4596, - "gsl-randist": 4596, - "gslj": 106, - "gslp": 106, + "gsl-config": 4615, + "gsl-histogram": 4615, + "gsl-randist": 4615, + "gslj": 107, + "gslp": 107, "gsmap": 1, "gsnap": 12, "gsnap.nosimd": 9, @@ -13708,9 +13725,9 @@ "gsnapl": 12, "gsnapl.nosimd": 9, "gsnapl.sse42": 12, - "gsnd": 106, + "gsnd": 107, "gsort": 5, - "gss-client": 5951, + "gss-client": 5973, "gss-server": 2, "gst-completion-helper": 1, "gst-device-monitor-1.0": 246, @@ -13780,20 +13797,20 @@ "gthgetseq": 3, "gthsplit": 3, "gthsplit2dim.sh": 3, - "gtk-builder-convert": 189, + "gtk-builder-convert": 191, "gtk-builder-tool": 4, - "gtk-demo": 189, + "gtk-demo": 191, "gtk-encode-symbolic-svg": 4, "gtk-launch": 4, - "gtk-query-immodules-2.0": 189, + "gtk-query-immodules-2.0": 191, "gtk-query-immodules-3.0": 4, "gtk-query-settings": 4, "gtk-update-icon-cache": 186, "gtop": 2, - "gts-config": 149, - "gts2dxf": 149, - "gts2oogl": 149, - "gts2stl": 149, + "gts-config": 151, + "gts2dxf": 151, + "gts2oogl": 151, + "gts2stl": 151, "gts_compare": 1, "gts_copy": 1, "gts_count": 1, @@ -13801,10 +13818,10 @@ "gts_filter": 1, "gts_get": 1, "gts_ls": 1, - "gtscheck": 149, - "gtscompare": 149, + "gtscheck": 151, + "gtscompare": 151, "gtst": 2, - "gtstemplate": 149, + "gtstemplate": 151, "gtt-align-and-trim-parallel.sh": 1, "gtt-amino-acid-parallel.sh": 1, "gtt-amino-acid-serial.sh": 1, @@ -13874,13 +13891,13 @@ "gushr.py": 1, "gustaf": 2, "gustaf_mate_joining": 2, - "gv2gml": 204, - "gv2gxl": 204, + "gv2gml": 206, + "gv2gxl": 206, "gvcf2bed": 2, "gvcf2coverage": 1, "gvcf_regions.py": 1, "gvcfgenotyper": 1, - "gvcolor": 204, + "gvcolor": 206, "gvf2bed": 15, "gvf2bed-float128": 15, "gvf2bed-megarow": 15, @@ -13890,11 +13907,11 @@ "gvf2starch-megarow": 15, "gvf2starch-typical": 15, "gvf_iit": 12, - "gvgen": 204, - "gvmap": 204, - "gvmap.sh": 204, - "gvpack": 204, - "gvpr": 204, + "gvgen": 206, + "gvmap": 206, + "gvmap.sh": 206, + "gvpack": 206, + "gvpr": 206, "gw-forcefield.py": 1, "gw-join_parts.py": 1, "gw-merge_topologies.py": 1, @@ -13918,8 +13935,8 @@ "gx-fastq-trimmer-by-quality": 2, "gxf2bed": 1, "gxf2chrom": 1, - "gxl2dot": 204, - "gxl2gv": 204, + "gxl2dot": 206, + "gxl2gv": 206, "gxw2consensus.pl": 1, "gxw2consensus.pl.bak": 1, "gxw2stats.pl": 1, @@ -13934,43 +13951,43 @@ "gzrecover": 1, "h-num": 1, "h-num.pl": 3, - "h264dec": 12, - "h264enc": 12, + "h264dec": 13, + "h264enc": 13, "h2load": 3929, - "h2ph": 1752, - "h2xs": 1752, - "h4_ncdump": 130, - "h4_ncgen": 130, - "h4cc": 130, - "h4redeploy": 130, - "h52gif": 583, - "h5c++": 583, - "h5cc": 588, - "h5clear": 567, - "h5copy": 583, - "h5debug": 583, - "h5delete": 123, - "h5diff": 583, - "h5dump": 585, - "h5fc": 570, - "h5format_convert": 567, - "h5fuse": 2, + "h2ph": 1754, + "h2xs": 1754, + "h4_ncdump": 131, + "h4_ncgen": 131, + "h4cc": 131, + "h4redeploy": 131, + "h52gif": 585, + "h5c++": 585, + "h5cc": 590, + "h5clear": 569, + "h5copy": 585, + "h5debug": 585, + "h5delete": 125, + "h5diff": 585, + "h5dump": 587, + "h5fc": 572, + "h5format_convert": 569, + "h5fuse": 4, "h5fuse.sh": 88, - "h5import": 583, - "h5jam": 583, - "h5ls": 583, - "h5mkgrp": 583, + "h5import": 585, + "h5jam": 585, + "h5ls": 585, + "h5mkgrp": 585, "h5pcc": 3, "h5perf": 3, - "h5perf_serial": 583, + "h5perf_serial": 585, "h5pfc": 3, - "h5redeploy": 583, - "h5repack": 583, - "h5repart": 583, - "h5stat": 583, + "h5redeploy": 585, + "h5repack": 585, + "h5repart": 585, + "h5stat": 585, "h5tools_test_utils": 67, - "h5unjam": 583, - "h5watch": 567, + "h5unjam": 585, + "h5watch": 569, "hAMRoaster": 1, "h_num": 1, "haarz.x": 1, @@ -14118,11 +14135,11 @@ "haystack_pipeline": 1, "haystack_run_test": 1, "haystack_tf_activity_plane": 1, - "hb-info": 335, - "hb-ot-shape-closure": 5137, - "hb-shape": 5137, - "hb-subset": 4701, - "hb-view": 5094, + "hb-info": 355, + "hb-ot-shape-closure": 5157, + "hb-shape": 5157, + "hb-subset": 4721, + "hb-view": 5114, "hbvblast.sh": 1, "hca-matrix-downloader": 1, "hca-mtx-to-10x": 1, @@ -14131,23 +14148,23 @@ "hcluster_sg": 1, "hcp_getpdb": 7, "hdStat": 1, - "hdf24to8": 130, - "hdf2gif": 130, - "hdf2jpeg": 130, + "hdf24to8": 131, + "hdf2gif": 131, + "hdf2jpeg": 131, "hdf2tf.py": 5, "hdf5tobam": 1, "hdf5tobam_dir": 1, - "hdf8to24": 130, - "hdfcomp": 130, - "hdfed": 130, - "hdfimport": 130, - "hdfls": 130, - "hdfpack": 130, - "hdftopal": 130, - "hdftor8": 130, - "hdfunpac": 130, - "hdiff": 130, - "hdp": 130, + "hdf8to24": 131, + "hdfcomp": 131, + "hdfed": 131, + "hdfimport": 131, + "hdfls": 131, + "hdfpack": 131, + "hdftopal": 131, + "hdftor8": 131, + "hdfunpac": 131, + "hdiff": 131, + "hdp": 131, "hdrcopy": 1, "head": 86, "headPolishes": 3, @@ -14242,6 +14259,7 @@ "hiddenDomains.R": 1, "hidehead": 5, "hierarchical_clustering_heatmap.py": 2, + "hierarchy_utils.py": 1, "hifiadapterfilt.bib": 1, "hifiadapterfilt.ris": 1, "hifiadapterfilt.sh": 1, @@ -14408,7 +14426,7 @@ "hpc-blast": 1, "hpc_profile.py": 1, "hpcrunner.pl": 1, - "hrepack": 130, + "hrepack": 131, "hrepeat": 1, "hs-blastn": 3, "hsc2hs": 1, @@ -14424,6 +14442,7 @@ "ht_protocol_finder.pl": 1, "html2repeatbed.pl": 1, "html2text": 2, + "html_head.txt": 1, "htmltree": 148, "htop": 2, "hts_AdapterTrimmer": 2, @@ -14443,7 +14462,7 @@ "htseq-count": 22, "htseq-count-barcodes": 14, "htseq-qa": 22, - "htsfile": 736, + "htsfile": 737, "htsget": 2, "htsinfer": 1, "httpcfg": 16, @@ -14455,7 +14474,7 @@ "huge-merge.pl": 2, "huge-sort.pl": 2, "huge-split.pl": 2, - "huggingface-cli": 5, + "huggingface-cli": 7, "hulk": 1, "humanfriendly": 117, "humann": 1, @@ -14506,21 +14525,21 @@ "humann_unpack_pathways": 1, "humid": 1, "hv-pipeline.py": 1, - "hwloc-annotate": 100, + "hwloc-annotate": 102, "hwloc-assembler": 2, "hwloc-assembler-remote": 2, - "hwloc-bind": 100, - "hwloc-calc": 100, - "hwloc-compress-dir": 100, - "hwloc-diff": 100, + "hwloc-bind": 102, + "hwloc-calc": 102, + "hwloc-compress-dir": 102, + "hwloc-diff": 102, "hwloc-distances": 2, - "hwloc-distrib": 100, - "hwloc-gather-cpuid": 98, - "hwloc-gather-topology": 100, - "hwloc-info": 100, - "hwloc-ls": 100, - "hwloc-patch": 100, - "hwloc-ps": 100, + "hwloc-distrib": 102, + "hwloc-gather-cpuid": 100, + "hwloc-gather-topology": 102, + "hwloc-info": 102, + "hwloc-ls": 102, + "hwloc-patch": 102, + "hwloc-ps": 102, "hyb_analyze": 1, "hyb_check": 1, "hyb_eval": 1, @@ -14589,9 +14608,9 @@ "ichar": 1, "icon-font-to-png": 2, "iconv": 5462, - "icu-config": 5952, - "icuexportdata": 2163, - "icuinfo": 5952, + "icu-config": 5972, + "icuexportdata": 2183, + "icuinfo": 5972, "id": 86, "id_conserved_regions.pl": 1, "idba": 10, @@ -14613,7 +14632,7 @@ "ideas": 1, "idemux": 1, "idemuxCPP": 1, - "identify": 76, + "identify": 77, "identify-cli": 1, "identify-indel-regions.pl": 1, "identifyHMM": 1, @@ -14625,11 +14644,11 @@ "idfetch": 1, "idiag-socket-details": 14, "idle": 335, - "idle3": 3536, - "idle3.10": 840, + "idle3": 3553, + "idle3.10": 842, "idle3.11": 286, - "idle3.12": 305, - "idle3.13": 28, + "idle3.12": 307, + "idle3.13": 41, "idle3.4": 5, "idle3.5": 103, "idle3.6": 344, @@ -14639,7 +14658,7 @@ "idlj": 117, "idmatrix.sh": 31, "idn": 31, - "idn2": 298, + "idn2": 299, "idpAssemble": 2, "idpQonvert": 2, "idpQuery": 2, @@ -14745,9 +14764,9 @@ "illumiprocessor": 2, "ilp-rrrmt": 1, "im2deep": 1, - "imagecodecs": 29, - "imageio_download_bin": 32, - "imageio_remove_bin": 32, + "imagecodecs": 30, + "imageio_download_bin": 33, + "imageio_remove_bin": 33, "imagespread": 5, "imagetops": 1, "imc": 2, @@ -14761,7 +14780,7 @@ "img2dcm": 1, "img2png": 7, "img2py": 7, - "img2webp": 348, + "img2webp": 349, "img2xpm": 7, "imgcmp": 7, "imginfo": 7, @@ -14776,7 +14795,7 @@ "imove": 2, "impala": 38, "impg": 1, - "import": 76, + "import": 77, "import-html-template": 13, "import-itol.pl": 1, "import_DE_results.pl": 1, @@ -14850,11 +14869,11 @@ "infoalign": 27, "infoassembly": 27, "infobase": 27, - "infocmp": 7945, + "infocmp": 7970, "inforesidue": 27, "informant.py": 1, "infoseq": 27, - "infotocap": 7945, + "infotocap": 7970, "ini2xml": 41, "init_Trinotate_sqlite_db.pl": 1, "init_db.sh": 1, @@ -14871,9 +14890,9 @@ "innochecksum": 10, "input_commands.py": 2, "input_output.py": 1, - "input_processing.py": 1, + "input_processing.py": 2, "inputgui.f": 1, - "inputs_validation.py": 1, + "inputs_validation.py": 2, "insert-length-histogram": 2, "insert-sizes": 2, "insert_mol_no_vmd.py": 1, @@ -14894,7 +14913,7 @@ "install": 86, "install.db.tables.r": 5, "install.pl": 2, - "installBiocDataPackage.sh": 301, + "installBiocDataPackage.sh": 312, "installMetaphyler.pl": 1, "installPackages.R": 1, "install_archived_sybilSBML.sh": 1, @@ -14916,10 +14935,11 @@ "installpackages.R": 1, "installvst": 16, "instance_events": 29, - "instmodsh": 1752, + "instmodsh": 1754, "int_seqs_to_char_strings.py": 60, "intake": 1, "intake-server": 1, + "intedit": 1, "integrate_alignments.py": 1, "integration-test": 1, "integration_tests": 1, @@ -14947,7 +14967,7 @@ "interop_plot_qscore_histogram": 4, "interop_plot_sample_qc": 4, "interop_summary": 4, - "interpolate_sam.pl": 538, + "interpolate_sam.pl": 539, "interprophet.rb": 1, "interproscan.sh": 1, "intersect": 5, @@ -14971,6 +14991,7 @@ "intron2exex.pl": 3, "intron_exon_reads.py": 38, "intron_exon_reads.pyc": 1, + "intxyz": 1, "inv": 2, "invert-pubmed": 1, "invertdb": 1, @@ -15034,8 +15055,8 @@ "ipython3.10": 1, "ipython3.9": 4, "iqkm": 1, - "iqtree": 34, - "iqtree2": 23, + "iqtree": 35, + "iqtree2": 24, "ir": 1, "irb": 30, "irepair": 1, @@ -15091,7 +15112,7 @@ "isql": 1, "iss": 2, "isutf8": 3, - "isympy": 44, + "isympy": 46, "it.cpython-36m-x86_64-linux-gnu.so": 1, "it.so": 1, "iterate": 2, @@ -15273,12 +15294,12 @@ "joint-parsimony": 1, "jp.py": 109, "jpackage": 136, - "jpeg2hdf": 130, - "jpegtran": 5889, - "jpgicc": 1081, + "jpeg2hdf": 131, + "jpegtran": 5909, + "jpgicc": 1082, "jpredapi": 1, "jps": 557, - "jq": 314, + "jq": 325, "jronn": 1, "jrunscript": 557, "js-beautify": 1, @@ -15289,7 +15310,7 @@ "json2gff": 1, "json2xml": 230, "json_collect_data_source.py": 1, - "json_pp": 1752, + "json_pp": 1754, "json_xs": 376, "jsondiff": 9, "jsonl2xml": 41, @@ -15351,14 +15372,14 @@ "just-top-hits": 21, "just_blast_test.pl": 1, "jwebserver": 52, - "k5srvutil": 5951, - "k8": 171, + "k5srvutil": 5973, + "k8": 172, "k8-Linux": 1, "k_means": 1, "k_means_coefficient": 1, "k_neighbors": 1, "k_neighbors_coefficient": 1, - "kadmin": 5951, + "kadmin": 5973, "kadmin.local": 2, "kadmind": 2, "kaiju": 4, @@ -15453,7 +15474,7 @@ "kdbmeta.3.0.3": 1, "kdbmeta.3.1.0": 1, "kdbmeta.3.1.1": 1, - "kdestroy": 5951, + "kdestroy": 5973, "kea-config": 38, "keep-header": 1, "keep-ribo-periodic": 1, @@ -15465,7 +15486,7 @@ "keggpathway_map.py": 1, "kestrel": 1, "keyFreq": 1, - "keyctl": 2580, + "keyctl": 2602, "keygen": 1, "keyring": 11, "keytool": 557, @@ -15496,7 +15517,7 @@ "kinSimRiboswitch": 1, "king": 1, "kingfisher": 1, - "kinit": 5951, + "kinit": 5973, "kinship-read": 1, "kinshipDecompose": 1, "kinwalker": 57, @@ -15509,7 +15530,7 @@ "kitsch": 10, "kitsune": 1, "kleborate": 1, - "klist": 5951, + "klist": 5973, "kma": 19, "kma_index": 19, "kma_shm": 19, @@ -15601,7 +15622,7 @@ "kp1mer_to_kmer.py": 1, "kp2np.py": 1, "kpal": 2, - "kpasswd": 5951, + "kpasswd": 5973, "kpileup.py": 1, "kprop": 2, "kpropd": 2, @@ -15648,7 +15669,7 @@ "krakenuniq-report": 1, "krakenuniq-translate": 1, "krakmeopen": 1, - "krb5-config": 5951, + "krb5-config": 5973, "krb5-send-pr": 2, "krb5kdc": 2, "kreport2krona.py": 3, @@ -15664,9 +15685,9 @@ "kseq_split": 1, "ksnp": 1, "kssd": 1, - "ksu": 5951, + "ksu": 5973, "ksw": 1, - "kswitch": 5951, + "kswitch": 5973, "ktClassifyBLAST": 17, "ktClassifyHits": 13, "ktGetContigMagnitudes": 17, @@ -15697,12 +15718,12 @@ "ktserver": 2, "kttimedmgr": 2, "kttimedtest": 2, - "ktutil": 5951, + "ktutil": 5973, "ktutilmgr": 2, "ktutilserv": 2, "ktutiltest": 2, "kubectl": 1, - "kvno": 5951, + "kvno": 5973, "kwip": 2, "kwip-stats": 2, "l4p-tmpl": 32, @@ -15717,7 +15738,7 @@ "lambda": 1, "lambda2": 1, "lambda_indexer": 1, - "lame": 51, + "lame": 52, "lamp": 1, "langford-number": 2, "largeb_despair": 1, @@ -15805,17 +15826,17 @@ "ld.awk": 1, "ld.bfd": 8, "ld.gold": 8, - "ldapadd": 5, - "ldapcompare": 5, - "ldapdelete": 5, - "ldapexop": 5, - "ldapmodify": 5, - "ldapmodrdn": 5, - "ldappasswd": 5, - "ldapsearch": 5, - "ldapurl": 5, - "ldapvc": 5, - "ldapwhoami": 5, + "ldapadd": 6, + "ldapcompare": 6, + "ldapdelete": 6, + "ldapexop": 6, + "ldapmodify": 6, + "ldapmodrdn": 6, + "ldappasswd": 6, + "ldapsearch": 6, + "ldapurl": 6, + "ldapvc": 6, + "ldapwhoami": 6, "ldc-build-runtime": 17, "ldc-profdata": 17, "ldc-prune-cache": 17, @@ -15873,8 +15894,8 @@ "libclair3.cpython-36m-x86_64-linux-gnu.so": 1, "libclair3.o": 1, "libclair3.so": 1, - "libdeflate-gunzip": 4270, - "libdeflate-gzip": 4270, + "libdeflate-gunzip": 4291, + "libdeflate-gzip": 4291, "libdrawgram.so": 5, "libdrawtree.so": 5, "libfile.pl": 1, @@ -15883,9 +15904,9 @@ "libiomp5md.dll": 1, "liblist.pl": 1, "liblist.pl.bak": 1, - "libnetcfg": 1752, - "libpng-config": 6008, - "libpng16-config": 6008, + "libnetcfg": 1754, + "libpng-config": 6028, + "libpng16-config": 6028, "libpypy-c.so": 1, "libpypy-c.so.debug": 1, "libpypy3-c.so.debug": 3, @@ -15911,7 +15932,7 @@ "liftover.awk": 1, "ligand": 1, "lighter": 10, - "lightning": 2, + "lightning": 3, "lightning_predict": 2, "lightning_train": 2, "lighttpd": 2, @@ -15945,11 +15966,11 @@ "link_ssv.py": 1, "linkage2allegro": 1, "linkhsp_unit_test": 5, - "linkicc": 1081, + "linkicc": 1082, "linknets": 2, "links2sql.pl": 7, "linksBed": 281, - "linsi": 113, + "linsi": 114, "linux32": 13, "linux64": 13, "linx": 1, @@ -16180,7 +16201,7 @@ "lpconvert": 1, "lpp_assign_leaflets": 1, "lprodump": 52, - "lprsetup.sh": 106, + "lprsetup.sh": 107, "lpython": 3, "lq_adapt.py": 1, "lq_coverage.py": 1, @@ -16222,12 +16243,12 @@ "lsirq": 8, "lslocks": 13, "lslogins": 13, - "lsm2bin": 30, + "lsm2bin": 31, "lsmem": 13, "lsns": 13, "lss3": 29, - "lstopo": 100, - "lstopo-no-graphics": 100, + "lstopo": 102, + "lstopo-no-graphics": 102, "ltqnorm.pl": 1, "ltqnorm.pl.bak": 1, "ltr_finder": 3, @@ -16265,21 +16286,21 @@ "lwp-request": 200, "lyner": 1, "lz-ani": 1, - "lz4": 3557, + "lz4": 3560, "lz4_decompress": 2, - "lz4c": 3556, - "lz4cat": 3556, - "lzcat": 7760, - "lzcmp": 7760, - "lzdiff": 7760, - "lzegrep": 7760, - "lzfgrep": 7760, - "lzgrep": 7760, - "lzless": 7760, - "lzma": 7760, - "lzmadec": 7760, - "lzmainfo": 7760, - "lzmore": 7760, + "lz4c": 3559, + "lz4cat": 3559, + "lzcat": 7763, + "lzcmp": 7763, + "lzdiff": 7763, + "lzegrep": 7763, + "lzfgrep": 7763, + "lzgrep": 7763, + "lzless": 7763, + "lzma": 7763, + "lzmadec": 7763, + "lzmainfo": 7763, + "lzmore": 7763, "lzop_build_offset_table.py": 60, "m-party": 1, "m-tx": 1, @@ -16397,20 +16418,20 @@ "maf_translate_chars.py": 60, "maf_truncate.py": 60, "maf_word_frequency.py": 60, - "mafft": 114, - "mafft-distance": 113, - "mafft-einsi": 113, - "mafft-fftns": 113, - "mafft-fftnsi": 113, - "mafft-ginsi": 113, - "mafft-homologs.rb": 113, - "mafft-linsi": 113, - "mafft-nwns": 113, - "mafft-nwnsi": 113, - "mafft-profile": 113, - "mafft-qinsi": 113, - "mafft-sparsecore.rb": 111, - "mafft-xinsi": 113, + "mafft": 115, + "mafft-distance": 114, + "mafft-einsi": 114, + "mafft-fftns": 114, + "mafft-fftnsi": 114, + "mafft-ginsi": 114, + "mafft-homologs.rb": 114, + "mafft-linsi": 114, + "mafft-nwns": 114, + "mafft-nwnsi": 114, + "mafft-profile": 114, + "mafft-qinsi": 114, + "mafft-sparsecore.rb": 112, + "mafft-xinsi": 114, "mafft.yaml": 1, "mag-improve": 37, "mag2gfa": 1, @@ -16425,8 +16446,8 @@ "magic-square": 2, "magicblast": 1, "magicblast_unit_test": 5, - "magick": 76, - "magick-script": 76, + "magick": 77, + "magick-script": 77, "magnet-link": 12, "magnitude_difference_flags.py": 2, "magpurify": 1, @@ -16440,7 +16461,7 @@ "main_html_generator.py": 1, "makblk.pl": 4, "makdbs": 4, - "make": 4190, + "make": 4209, "make-barcodes.awk": 1, "make-cluster.R": 1, "make-conf": 2, @@ -16597,7 +16618,7 @@ "makechimeras.sh": 31, "makeclusterdb": 5, "makecontaminatedgenomes.sh": 31, - "makeconv": 5952, + "makeconv": 5972, "makedtx": 1, "makefasta.awk": 1, "makegeo": 39, @@ -16657,7 +16678,7 @@ "manualcompile.sh": 1, "map": 57, "map-fastq.pl": 5, - "map.py": 1, + "map.py": 2, "map2assembly": 1, "map2bed.pl": 2, "map2db": 1, @@ -16719,8 +16740,8 @@ "mapula": 1, "mapview": 46, "mapviewToBed.pl": 1, - "maq2sam-long": 538, - "maq2sam-short": 538, + "maq2sam-long": 539, + "maq2sam-short": 539, "mareymaps_untrimmed.smk": 1, "marge": 1, "margin_cons": 2, @@ -16965,9 +16986,9 @@ "md5cp.2.11.0": 10, "md5cp.3": 2, "md5cp.3.0.0": 2, - "md5fa": 538, + "md5fa": 539, "md5sum": 86, - "md5sum-lite": 538, + "md5sum-lite": 539, "md_coords": 12, "mda_hole": 1, "mdasim": 1, @@ -17491,7 +17512,7 @@ "minimac4": 1, "minimap": 1, "minimap-lite": 1, - "minimap2": 175, + "minimap2": 176, "minimap2-coverage": 2, "minimap2.py": 27, "minimap2_genome": 1, @@ -17506,6 +17527,7 @@ "minimap2_pacbio_meta": 1, "minimap2_pacbio_meta_dir": 1, "minimeta": 1, + "minimize": 1, "minimize_pdb.py": 1, "minimize_pdb_and_cyclic.py": 1, "minimizers": 1, @@ -17517,11 +17539,13 @@ "miniprot": 7, "miniprot_boundary_scorer": 1, "minirmd": 1, + "minirot": 1, "miniterm.py": 1, "miniwdl": 2, "minizip": 5, "minnow": 1, "minority_freq": 1, + "minrigid": 1, "mintie": 1, "minute": 1, "minvar": 1, @@ -17621,7 +17645,7 @@ "mlst_download_functions.jl": 2, "mltree": 1, "mm-alignments.pl": 1, - "mm2gv": 204, + "mm2gv": 206, "mm2plus": 1, "mm2plus.avx": 1, "mm2plus.avx2": 1, @@ -17674,7 +17698,7 @@ "model.r.bak": 1, "model_P": 1, "model_datasets_concatenator.py": 1, - "model_manager.py": 1, + "model_manager.py": 2, "model_postpro.py": 1, "models.py": 1, "modeltest-ng": 5, @@ -17691,13 +17715,15 @@ "module_enrichment.py": 1, "module_identify": 1, "moff_all.py": 1, - "mogrify": 76, + "mogrify": 77, "mojo": 6, "mokapot": 4, "mol2rtf.py": 7, + "mol2xyz": 1, "moleculeSize.py": 1, "molsurf": 6, "molvs": 1, + "molxyz": 1, "momo": 8, "money": 2, "mongo": 3, @@ -17739,7 +17765,8 @@ "monovar.py": 1, "monsda": 1, "monsda_configure": 1, - "montage": 76, + "montage": 77, + "monte": 1, "moods-dna.py": 7, "moose-outdated": 121, "morbo": 6, @@ -17811,9 +17838,9 @@ "mprof-report": 16, "mptopdf": 1, "mpxstats": 1, - "mqtt5_app": 57, - "mqtt5_canary": 57, - "mqtt5canary": 57, + "mqtt5_app": 58, + "mqtt5_canary": 58, + "mqtt5canary": 58, "mquad": 1, "mrcfile-header": 4, "mrcfile-validate": 4, @@ -17856,24 +17883,24 @@ "mseqtools": 1, "msformatter": 1, "msfragger": 2, - "msgattrib": 5329, - "msgcat": 5329, - "msgcmp": 5329, - "msgcomm": 5329, - "msgconv": 5329, - "msgen": 5329, - "msgexec": 5329, + "msgattrib": 5330, + "msgcat": 5330, + "msgcmp": 5330, + "msgcomm": 5330, + "msgconv": 5330, + "msgen": 5330, + "msgexec": 5330, "msgf2pin": 1, "msgf_plus": 3, - "msgfilter": 5329, - "msgfmt": 5329, + "msgfilter": 5330, + "msgfmt": 5330, "msgfplus_search.rb": 1, - "msggrep": 5329, - "msginit": 5329, - "msgmerge": 5329, + "msggrep": 5330, + "msginit": 5330, + "msgmerge": 5330, "msgserv": 1, - "msgunfmt": 5329, - "msguniq": 5329, + "msgunfmt": 5330, + "msguniq": 5330, "msi": 1, "msi_cluster2reads": 1, "msi_clustr2map.pl": 1, @@ -18142,11 +18169,11 @@ "nasm": 1, "nasp": 1, "native2ascii": 112, - "natsort": 176, + "natsort": 177, "nb-classify": 1, "nb-train": 1, "nbmodel_stan2.py": 1, - "nc-config": 134, + "nc-config": 135, "nc3tonc4": 11, "nc4tonc3": 11, "ncbi-acc-download": 1, @@ -18161,11 +18188,11 @@ "ncbi_genetic_codes.py": 1, "ncbisort": 1, "ncbitax2lin": 1, - "nccopy": 134, - "ncdump": 134, + "nccopy": 135, + "ncdump": 135, "ncfp": 1, - "ncgen": 134, - "ncgen3": 134, + "ncgen": 135, + "ncgen3": 135, "ncinfo": 11, "ncm.py": 1, "ncm_fastq.py": 1, @@ -18184,9 +18211,9 @@ "ncrf_to_bed": 2, "ncrf_to_bed.py": 2, "ncurses5-config": 565, - "ncurses6-config": 7238, + "ncurses6-config": 7263, "ncursesw5-config": 703, - "ncursesw6-config": 7239, + "ncursesw6-config": 7264, "ndfes": 1, "ndfes-AvgFESs.py": 1, "ndfes-CheckEquil.py": 1, @@ -18202,7 +18229,7 @@ "ndmetis": 60, "ndx2resttop": 3, "nearblack": 40, - "neato": 204, + "neato": 206, "nebulizer": 1, "necat": 1, "nedbit-features-calculator": 1, @@ -18267,6 +18294,8 @@ "newscanNT.x": 1, "newseq": 27, "newtemp": 1, + "newton": 1, + "newtrot": 1, "nextDenovo": 1, "nextPolish": 2, "nextPolish2": 1, @@ -18291,7 +18320,7 @@ "nf-test": 1, "nfe-umbrella-slice": 7, "ngd": 12, - "ngettext": 5329, + "ngettext": 5330, "ngg_barabasi_albert": 2, "ngg_barbell": 2, "ngg_complete": 2, @@ -18301,9 +18330,9 @@ "ngg_newman_watts_strogatz": 2, "ngg_path": 2, "ngg_ring_lattice": 2, - "nghttp": 4601, - "nghttpd": 4601, - "nghttpx": 4601, + "nghttp": 4623, + "nghttpd": 4623, + "nghttpx": 4623, "ngless": 2, "ngless-wrapped": 1, "nglview": 2, @@ -18428,7 +18457,7 @@ "noncoding-trainer.pl": 2, "nonogram": 2, "nonpareil": 1, - "nop": 204, + "nop": 206, "nopilesum": 1, "noreturn": 27, "norm": 1, @@ -18448,7 +18477,7 @@ "normalize_multicov.pl": 1, "normalize_oneD.R": 1, "normalize_table.py": 1, - "normalizer": 526, + "normalizer": 529, "normandcorrectwrapper.sh": 1, "nose2": 1, "nose2-2.7": 1, @@ -18466,7 +18495,7 @@ "noveliso.py": 1, "novo2maq": 1, "novo2paf": 2, - "novo2sam.pl": 539, + "novo2sam.pl": 540, "novoBreak": 1, "novoalign": 2, "novoalign-license-register": 2, @@ -18542,6 +18571,7 @@ "nucamino": 1, "nucdiff": 1, "nucfreqsfasta": 1, + "nucleic": 1, "nucleoatac": 1, "nucleosome_prediction.pl": 1, "nucleosome_prediction.pl.bak": 1, @@ -18557,11 +18587,11 @@ "nullarbor.pl": 1, "nulltype_module.py": 1, "numCI": 4, - "numba": 177, + "numba": 178, "number-lines": 1, "numfmt": 86, "numlines": 1, - "numpy-config": 88, + "numpy-config": 94, "nunit-console": 10, "nunit-console2": 10, "nunit-console4": 10, @@ -18591,8 +18621,8 @@ "nw_trim": 2, "nwalign3": 1, "nwindow.py": 1, - "nwns": 113, - "nwnsi": 113, + "nwns": 114, + "nwnsi": 114, "nxtrim": 2, "o-bars-for-each-column.R": 1, "o-boxplots.R": 1, @@ -18817,7 +18847,7 @@ "oncotator": 1, "one_field_per_line.py": 60, "onehot2seq": 1, - "onig-config": 314, + "onig-config": 325, "onnxruntime_test": 3, "ontime": 1, "ontocount": 27, @@ -18848,21 +18878,24 @@ "openslide-quickhash1sum": 2, "openslide-show-properties": 2, "openslide-write-png": 2, - "openssl": 8014, + "openssl": 8039, "opentargets_validator": 1, "operation.py": 1, - "opj_compress": 719, - "opj_decompress": 719, - "opj_dump": 719, + "opj_compress": 721, + "opj_decompress": 721, + "opj_dump": 721, "opl2ofm": 1, "opsin": 1, "opt": 6, "opt_init_and_term_probs.pl": 15, "optimir": 1, + "optimize": 1, "optimize2.pl": 1, "optimize_augustus.pl": 15, "optimize_primers.py": 1, "optionshandle_unit_test": 5, + "optirot": 1, + "optrigid": 1, "opts-example-required.pl": 2, "opts-example.pl": 2, "optuna": 4, @@ -18872,11 +18905,11 @@ "orator": 1, "orbd": 117, "orc-bugreport": 14, - "orc-contents": 82, - "orc-memory": 77, - "orc-metadata": 82, - "orc-scan": 77, - "orc-statistics": 82, + "orc-contents": 83, + "orc-memory": 78, + "orc-metadata": 83, + "orc-scan": 78, + "orc-statistics": 83, "orca-server": 1, "orcc": 14, "order.smk": 1, @@ -18930,7 +18963,7 @@ "orthomclSortGroupsFile": 1, "orthomcl_database": 1, "orthomcl_database.py": 1, - "osage": 204, + "osage": 206, "oshCC": 49, "oshc++": 49, "oshcc": 50, @@ -19075,7 +19108,7 @@ "paf_to_barplot.py": 1, "paf_to_dotplot.py": 1, "paf_to_heatmap.py": 1, - "paftools.js": 170, + "paftools.js": 171, "pager": 1, "painter.py": 20, "pair2tb": 1, @@ -19096,11 +19129,11 @@ "pairtools": 3, "pairwise_comparison": 1, "pal2nal.pl": 9, - "pal2rgb": 5359, + "pal2rgb": 5379, "pal_finder": 1, "paladin": 2, "palindrome": 27, - "paltohdf": 130, + "paltohdf": 131, "pam": 1, "pamon": 53, "pamp": 73, @@ -19133,10 +19166,10 @@ "pandaseq-diff": 1, "pandaseq-hang": 1, "pandaxs": 1, - "pandoc": 343, + "pandoc": 346, "pandoc-citeproc": 63, - "pandoc-lua": 17, - "pandoc-server": 45, + "pandoc-lua": 20, + "pandoc-server": 48, "pandora": 2, "panel": 2, "panfeed": 1, @@ -19145,10 +19178,10 @@ "panfeed-plot": 1, "pangenome_variants_to_treeWAS.pl": 1, "pango-collapse": 1, - "pango-list": 4053, + "pango-list": 4073, "pango-querymodules": 10, - "pango-segmentation": 2878, - "pango-view": 4856, + "pango-segmentation": 2898, + "pango-view": 4876, "pangoLEARN": 1, "pango_designation": 1, "pangolearn.smk": 1, @@ -19316,8 +19349,9 @@ "patch-hmm.pl": 2, "patchelf": 3, "patchpos.py": 1, - "patchwork": 204, + "patchwork": 206, "patgen": 1, + "path": 1, "path-graph": 1, "path.py": 1, "pathPhynder": 1, @@ -19404,11 +19438,11 @@ "pcoaPlot.py": 2, "pcor": 1, "pcre-config": 4952, - "pcre2-config": 3790, + "pcre2-config": 3810, "pcre2_jit_test": 3685, - "pcre2grep": 3790, + "pcre2grep": 3810, "pcre2posix_test": 113, - "pcre2test": 3790, + "pcre2test": 3810, "pcregrep": 4952, "pcretest": 4952, "pct2rgb": 1, @@ -19490,13 +19524,14 @@ "pdb_variants": 2, "pdb_wc": 2, "pdbfixer": 2, + "pdbxyz": 1, "pddrive": 1, "pddrive_spawn": 1, "pdf180": 1, "pdf270": 1, "pdf2dcm": 1, - "pdf2dsc": 106, - "pdf2ps": 106, + "pdf2dsc": 107, + "pdf2ps": 107, "pdf2txt.py": 1, "pdf90": 1, "pdfannotextractor": 1, @@ -19615,7 +19650,7 @@ "perf": 1, "perfect-square": 2, "perform_controls.pl": 1, - "perl": 1752, + "perl": 1754, "perl-doc": 2, "perl-reversion": 9, "perl5.22.0": 55, @@ -19623,12 +19658,12 @@ "perl5.26.2": 369, "perl5.30.3": 5, "perl5.32.0": 64, - "perl5.32.1": 1259, - "perlbug": 1752, - "perldoc": 1752, - "perlivp": 1752, + "perl5.32.1": 1261, + "perlbug": 1754, + "perldoc": 1754, + "perlivp": 1754, "perltex": 1, - "perlthanks": 1752, + "perlthanks": 1754, "permuteGPAT++": 32, "permuteSmooth": 32, "permute_structure.pl": 1, @@ -19636,14 +19671,14 @@ "perror": 107, "petl": 1, "peverify": 16, - "pf2afm": 106, + "pf2afm": 107, "pfam.py": 1, "pfam_enrich.pl": 1, "pfam_runner.pl": 5, "pfam_scan.pl": 2, "pfam_search.pl": 1, "pfarrei": 1, - "pfbtopfa": 106, + "pfbtopfa": 107, "pfbwt.x": 1, "pfbwt64.x": 1, "pfbwtNT.x": 1, @@ -19671,7 +19706,7 @@ "pg_build_idx": 1, "pg_build_sdb": 1, "pg_checksums": 42, - "pg_config": 161, + "pg_config": 162, "pg_controldata": 48, "pg_ctl": 48, "pg_dedup": 1, @@ -19987,7 +20022,7 @@ "pickle_cat.py": 1, "pickorientation.awk": 1, "pickout": 1, - "piconv": 1752, + "piconv": 1754, "picopore": 1, "picopore-realtime": 1, "picopore-rename": 1, @@ -20026,10 +20061,10 @@ "pints_caller": 1, "pints_normalizer": 1, "pints_visualizer": 1, - "pip": 3871, + "pip": 3888, "pip2": 1, "pip2.7": 1, - "pip3": 2794, + "pip3": 2811, "pipdeptree": 1, "pipelign": 1, "pipeline.py": 3, @@ -20180,15 +20215,15 @@ "pkcs1-conv": 33, "pkfix": 1, "pkfix-helper": 1, - "pkg-config": 78, - "pkg-config.bin": 78, - "pkgdata": 5952, + "pkg-config": 79, + "pkg-config.bin": 79, + "pkgdata": 5972, "pkginfo": 11, "pkill": 1, "pktogf": 1, "pktype": 1, "pl2bat.pl": 6, - "pl2pm": 1752, + "pl2pm": 1754, "plaScope.sh": 1, "plac_runner.py": 70, "place_orient1.smk": 1, @@ -20226,8 +20261,8 @@ "plip": 1, "plncpro": 1, "plncpro_format_ff.sh": 1, - "plot-ampliconstats": 342, - "plot-bamstats": 538, + "plot-ampliconstats": 343, + "plot-bamstats": 539, "plot-bmprobs": 4, "plot-cnv": 1, "plot-insert-size-distribution": 2, @@ -20389,22 +20424,22 @@ "pmxmutate": 1, "pn2pdf": 1, "pneumo-typer": 1, - "png-fix-itxt": 6008, + "png-fix-itxt": 6028, "pngcp": 89, - "pngfix": 6008, - "pngtogd": 246, - "pngtogd2": 246, + "pngfix": 6028, + "pngtogd": 248, + "pngtogd2": 248, "pnps-gen": 1, "poa": 24, "pocheck": 1, "poclcc": 3, - "pod2html": 1752, - "pod2man": 1752, - "pod2text": 1752, - "pod2usage": 1752, + "pod2html": 1754, + "pod2man": 1754, + "pod2text": 1754, + "pod2usage": 1754, "pod5": 1, "pod_cover": 12, - "podchecker": 1752, + "podchecker": 1754, "podselect": 438, "poetry": 7, "pointwise_datasets_concatenator.py": 1, @@ -20415,7 +20450,9 @@ "polap-parsing.sh": 1, "polap-pt.2.c70.3.faa": 1, "polap.sh": 1, + "polarize": 1, "polca.sh": 1, + "poledit": 1, "policytool": 112, "polish_with_illumina_assembly.sh": 1, "poller.py": 1, @@ -20487,6 +20524,7 @@ "postproc": 1, "postprocess-predictions": 2, "postprocessing.AMPS.r": 1, + "potential": 1, "potrace": 2, "pourRNA": 1, "pout2mzid": 1, @@ -20509,11 +20547,11 @@ "ppanini_rocplot": 1, "ppanini_scatterplot": 1, "ppanini_test": 1, - "pphs": 106, + "pphs": 107, "ppi2html": 2, "pplacer": 22, "ppltotf": 1, - "ppm2tiff": 5359, + "ppm2tiff": 5379, "pprodigal": 2, "pprof": 2, "pprof-symbolize": 1, @@ -20664,7 +20702,7 @@ "print_picrust2_config.py": 1, "print_qiime_config.py": 1, "print_unique": 1, - "printafm": 106, + "printafm": 107, "printenv": 86, "printf": 86, "printimage": 3, @@ -20677,6 +20715,7 @@ "priv-net-run.sh": 1, "prj2make": 2, "prlimit": 8, + "prmedit": 1, "proBAM.py": 1, "proBAM_ENSEMBL.py": 1, "proBAM_GUI.py": 1, @@ -20813,6 +20852,7 @@ "protdist": 10, "protect": 1, "protectionScore.py": 1, + "protein": 1, "protein-neighbors": 86, "proteinDBmasses.py": 1, "proteinDigest.py": 1, @@ -20860,7 +20900,7 @@ "protmapper": 1, "protobuf-net.dll": 2, "protobuf-net.xml": 2, - "protoc": 295, + "protoc": 298, "protoc-23.1.0": 1, "protoc-23.3.0": 4, "protoc-23.4.0": 6, @@ -20870,7 +20910,7 @@ "protoc-25.2.0": 2, "protoc-25.3.0": 32, "protoc-27.5.0": 5, - "protoc-28.2.0": 2, + "protoc-28.2.0": 5, "protoc-gen-grpclib_python": 1, "protoc-gen-mypy": 1, "protoc-gen-mypy_grpc": 1, @@ -20898,30 +20938,30 @@ "protxml_to_table.rb": 1, "prov-compare": 9, "prov-convert": 9, - "prove": 1752, + "prove": 1754, "provean": 1, "provean.sh": 1, "provis": 1, "prox10x.awk": 1, "prt_terms.py": 9, "prun": 3, - "prune": 204, + "prune": 206, "prune-ali.pl": 1, "prune-tree.pl": 1, "prune.awk": 1, "prune_otus.py": 1, "ps": 1, "ps.py": 1, - "ps2ascii": 106, - "ps2epsi": 106, + "ps2ascii": 107, + "ps2epsi": 107, "ps2frag": 1, - "ps2pdf": 106, - "ps2pdf12": 106, - "ps2pdf13": 106, - "ps2pdf14": 106, - "ps2pdfwr": 106, - "ps2ps": 106, - "ps2ps2": 106, + "ps2pdf": 107, + "ps2pdf12": 107, + "ps2pdf13": 107, + "ps2pdf14": 107, + "ps2pdfwr": 107, + "ps2ps": 107, + "ps2ps2": 107, "ps4pdf": 1, "ps_scan.pl": 2, "psa2msa": 2, @@ -20948,7 +20988,7 @@ "psiblast": 352, "psiblast_iteration_unit_test": 5, "psiblast_unit_test": 5, - "psicc": 1081, + "psicc": 1082, "psiclass": 1, "psiphi": 27, "psirc": 1, @@ -20961,7 +21001,7 @@ "psl2bed-float128": 15, "psl2bed-megarow": 15, "psl2bed-typical": 15, - "psl2sam.pl": 538, + "psl2sam.pl": 539, "psl2starch": 15, "psl2starch-float128": 15, "psl2starch-megarow": 15, @@ -20992,8 +21032,11 @@ "psmc_trunc.pl": 1, "psp-gen": 13, "psql": 48, + "pss": 1, "pssmcreate_unit_test": 5, "pssmenginefreqratios_unit_test": 5, + "pssrigid": 1, + "pssrot": 1, "pst2pdf": 1, "pstools": 1, "pstrain": 1, @@ -21006,9 +21049,9 @@ "pt2to3": 77, "ptGAUL.sh": 1, "ptangle": 1, - "ptar": 1752, - "ptardiff": 1752, - "ptargrep": 1752, + "ptar": 1754, + "ptardiff": 1754, + "ptargrep": 1754, "ptdump": 77, "ptest": 1, "ptex": 1, @@ -21188,12 +21231,12 @@ "pydemult": 1, "pydicom": 1, "pydna_repeatfinder": 1, - "pydoc": 3870, - "pydoc3": 3536, - "pydoc3.10": 840, + "pydoc": 3887, + "pydoc3": 3553, + "pydoc3.10": 842, "pydoc3.11": 286, - "pydoc3.12": 305, - "pydoc3.13": 28, + "pydoc3.12": 307, + "pydoc3.13": 41, "pydoc3.4": 5, "pydoc3.5": 103, "pydoc3.6": 344, @@ -21214,8 +21257,8 @@ "pyflyte-execute": 1, "pyflyte-fast-execute": 1, "pyflyte-map-execute": 1, - "pyftmerge": 464, - "pyftsubset": 464, + "pyftmerge": 465, + "pyftsubset": 465, "pygal_gen.py": 2, "pygcap": 1, "pygenetic_code": 1, @@ -21326,8 +21369,8 @@ "pytest": 151, "pytest-benchmark": 1, "pythia8-config": 1, - "python": 3871, - "python-argcomplete-check-easy-install-script": 351, + "python": 3888, + "python-argcomplete-check-easy-install-script": 362, "python-argcomplete-tcsh": 191, "python-build": 3, "python-config": 335, @@ -21337,17 +21380,17 @@ "python2.5-config": 1, "python2.7": 334, "python2.7-config": 316, - "python3": 3537, - "python3-config": 3536, - "python3.1": 1459, - "python3.10": 840, - "python3.10-config": 840, + "python3": 3554, + "python3-config": 3553, + "python3.1": 1476, + "python3.10": 842, + "python3.10-config": 842, "python3.11": 286, "python3.11-config": 286, - "python3.12": 305, - "python3.12-config": 305, - "python3.13": 28, - "python3.13-config": 28, + "python3.12": 307, + "python3.12-config": 307, + "python3.13": 41, + "python3.13-config": 41, "python3.4": 5, "python3.4-config": 5, "python3.4m": 5, @@ -21404,7 +21447,7 @@ "qcli_make_script": 3, "qcollectiongenerator": 262, "qcollectiongenerator-qt4": 3, - "qconvex": 66, + "qconvex": 67, "qcp": 2, "qcreporter.py": 1, "qcs": 2, @@ -21419,7 +21462,7 @@ "qdbusviewer6": 3, "qdbusxml2cpp": 260, "qdbusxml2cpp-qt4": 3, - "qdelaunay": 66, + "qdelaunay": 67, "qdistancefieldgenerator": 146, "qdistancefieldgenerator6": 3, "qdoc": 233, @@ -21430,13 +21473,13 @@ "qfy.py": 1, "qgltf": 194, "qgrs": 1, - "qhalf": 66, + "qhalf": 67, "qhelpconverter": 116, "qhelpconverter-qt4": 3, "qhelpgenerator": 262, "qhelpgenerator-qt4": 3, "qhery": 1, - "qhull": 66, + "qhull": 67, "qiime2lefse.py": 1, "qiimeToMaaslin.py": 1, "qiskit-xyz2pdb": 1, @@ -21583,13 +21626,13 @@ "qvinaw": 1, "qvinaw_split": 1, "qvkgen": 146, - "qvoronoi": 66, + "qvoronoi": 67, "qwebengine_convert_dict": 142, "r-seurat-scripts-post-install-tests.bats": 2, "r-seurat-scripts-post-install-tests.sh": 2, "r2r": 3, "r2r_msa_comply.pl": 2, - "r8tohdf": 130, + "r8tohdf": 131, "rCRS.fasta": 1, "rMETL": 1, "r_sample_int": 1, @@ -21604,6 +21647,7 @@ "racon": 27, "racon_wrapper": 27, "rad_haplotyper.pl": 1, + "radial": 1, "radiant": 1, "radical-utils-fix-headers.pl": 1, "radical-utils-mongodb.py": 1, @@ -21693,9 +21737,9 @@ "rasusa": 5, "ratewig.pl": 5, "ratt": 2, - "rav1e": 13, + "rav1e": 15, "raven": 4, - "raw2tiff": 5359, + "raw2tiff": 5379, "raw_n50": 10, "raw_n50.o": 10, "raw_vcf_parse.py": 1, @@ -21704,12 +21748,12 @@ "raxml-ng": 14, "raxml-ng-mpi": 14, "raxml.yaml": 1, - "raxmlHPC": 35, - "raxmlHPC-AVX2": 35, - "raxmlHPC-PTHREADS": 35, - "raxmlHPC-PTHREADS-AVX2": 35, - "raxmlHPC-PTHREADS-SSE3": 35, - "raxmlHPC-SSE3": 35, + "raxmlHPC": 36, + "raxmlHPC-AVX2": 36, + "raxmlHPC-PTHREADS": 36, + "raxmlHPC-PTHREADS-AVX2": 36, + "raxmlHPC-PTHREADS-SSE3": 36, + "raxmlHPC-SSE3": 36, "raxmlp": 8, "ray": 6, "ray-slurm-metacerberus.sh": 2, @@ -21723,7 +21767,7 @@ "rbhtfinder": 1, "rblist": 2, "rbmoegrid": 2, - "rbox": 66, + "rbox": 67, "rbpbench": 1, "rbrms": 1, "rbs": 9, @@ -21761,11 +21805,11 @@ "rcx_tk": 1, "rdbg": 9, "rdeval": 1, - "rdf2dot": 34, - "rdfgraphisomorphism": 34, - "rdfpipe": 34, - "rdfs2dot": 34, - "rdjpgcom": 5889, + "rdf2dot": 35, + "rdfgraphisomorphism": 35, + "rdfpipe": 35, + "rdfs2dot": 35, + "rdjpgcom": 5909, "rdkit2fps": 1, "rdma_client": 25, "rdma_server": 25, @@ -21800,7 +21844,7 @@ "read_NVC.py": 3, "read_chromo_size": 1, "read_classification.py": 1, - "read_classifier.py": 1, + "read_classifier.py": 2, "read_distribution.py": 3, "read_duplication.py": 3, "read_fasta.py": 1, @@ -21867,7 +21911,7 @@ "recgraph": 1, "reciprocal_blast_local": 1, "reciprocal_blast_local.py": 1, - "recode-sr-latin": 5329, + "recode-sr-latin": 5330, "recode_dir": 1, "recode_dir_legacy": 1, "recoder": 27, @@ -21961,7 +22005,7 @@ "refseqget": 27, "refseqsplit.py": 2, "regenie": 1, - "register-python-argcomplete": 351, + "register-python-argcomplete": 362, "regression_neural_network": 1, "regression_predict": 1, "regtools": 1, @@ -22220,6 +22264,7 @@ "report_single_snps_single_isolate.py": 1, "reporter.pl": 1, "reportfunk": 1, + "reporting_classes.py": 1, "reports.py": 1, "representative.sh": 31, "repstopdf": 1, @@ -22240,7 +22285,7 @@ "reseek": 1, "reseq": 1, "reseq-prepare-names.py": 1, - "reset": 7945, + "reset": 7970, "resetFragLibrary": 2, "reset_array.pl": 1, "reset_experiment.pl": 1, @@ -22363,7 +22408,7 @@ "rism3d.orave": 7, "rism3d.snglpnt": 7, "rism3d.thermo": 7, - "ristosds": 130, + "ristosds": 131, "rlebwt_ms_build": 1, "rls": 1, "rm": 86, @@ -22585,7 +22630,7 @@ "rstpep2html.py": 185, "rstream": 25, "rsv-typer": 1, - "rsvg-convert": 172, + "rsvg-convert": 174, "rsync": 29, "rsync-ssl": 27, "rtags": 1, @@ -22913,6 +22958,7 @@ "saccharis.show_family_categories": 1, "sacrebleu": 1, "sacremoses": 1, + "saddle": 1, "saddle.pl": 2, "saddle2dot.pl": 2, "saddle2gml.pl": 2, @@ -22970,7 +23016,7 @@ "sam2starch-float128": 15, "sam2starch-megarow": 15, "sam2starch-typical": 15, - "sam2vcf.pl": 538, + "sam2vcf.pl": 539, "samFLAGinfo.pl": 1, "samFilter": 1, "samMap.pl": 15, @@ -23030,8 +23076,8 @@ "samtoh5": 1, "samtom4": 1, "samtom5_dir": 1, - "samtools": 563, - "samtools.pl": 538, + "samtools": 564, + "samtools.pl": 539, "samtools_0.1.18": 3, "samtools_mpileup_to_var": 1, "samtoroc.sh": 31, @@ -23155,6 +23201,7 @@ "scallop2": 1, "scalpel-discovery": 2, "scalpel-export": 2, + "scan": 1, "scan-build": 7, "scan-build-py": 1, "scan-view": 7, @@ -23163,7 +23210,7 @@ "scancel-range": 1, "scancel_range.py": 1, "scandeps.pl": 2, - "scanpy": 62, + "scanpy": 63, "scanpy-cli": 1, "scanpy-filter-cells": 1, "scanpy-filter-genes": 1, @@ -23204,7 +23251,7 @@ "sccaf-assess-merger": 1, "sccaf-regress-out": 1, "sccaller": 1, - "sccmap": 204, + "sccmap": 206, "sccmec": 1, "scelestial": 1, "scelestial-synthesis": 1, @@ -23236,7 +23283,7 @@ "scitokens-test-access": 1, "scitokens-verify": 1, "sclass.X86_64.LINUX": 1, - "sclient": 5951, + "sclient": 5973, "sclust_summary.sh": 1, "scluster": 3, "scmap-cli-post-install-tests.bats": 1, @@ -23344,7 +23391,7 @@ "sdsort": 2, "sdsplit": 2, "sdtether": 2, - "sdust": 158, + "sdust": 159, "se": 1, "sea": 2, "seagen": 3, @@ -23365,7 +23412,7 @@ "secondary2split.py": 1, "sectosupp": 1, "secutil": 16, - "sed": 3974, + "sed": 3993, "seealso": 27, "seedRand.py": 1, "seedme": 1, @@ -23466,7 +23513,7 @@ "seq2onehot": 1, "seq2profile.pl": 5, "seq2science": 2, - "seq_cache_populate.pl": 538, + "seq_cache_populate.pl": 539, "seq_count": 2, "seq_diff": 1, "seq_download.py": 2, @@ -23609,7 +23656,7 @@ "severus": 1, "sexdeterrmine": 1, "sexp-conv": 33, - "sfdp": 204, + "sfdp": 206, "sfetch": 4, "sff-dump": 23, "sff-dump.2": 18, @@ -23676,7 +23723,7 @@ "sharq.3": 2, "sharq.3.0.0": 2, "shasta": 1, - "shasum": 1752, + "shasum": 1754, "shed-tools": 2, "shell_utils.py": 1, "shiboken2": 2, @@ -23774,7 +23821,7 @@ "sim-cover2": 2, "sim-shotgun": 2, "sim4db": 3, - "sim_client": 5951, + "sim_client": 5973, "sim_reads": 10, "sim_reads.o": 10, "sim_reads_tran": 10, @@ -23900,7 +23947,7 @@ "skip_selfmatches.py": 1, "skipredundant": 27, "skipseq": 27, - "skivi": 32, + "skivi": 33, "skmer": 1, "skopeo": 1, "skyline2isocor": 1, @@ -24018,6 +24065,7 @@ "sndfile-play": 56, "sndfile-regtest": 1, "sndfile-salvage": 56, + "sniffer": 1, "sniffles": 2, "sniffles-debug": 1, "sniffles_dir": 1, @@ -24076,7 +24124,7 @@ "snver-pool": 1, "soap": 2, "soap.coverage": 2, - "soap2sam.pl": 538, + "soap2sam.pl": 539, "soapcpp2": 1, "soapsplice": 1, "soapsuds": 16, @@ -24160,6 +24208,7 @@ "sourmash": 12, "sozip": 7, "spaTyper": 1, + "spacefill": 1, "spacepharer": 1, "spacy": 1, "spades": 3, @@ -24223,6 +24272,7 @@ "spectrast_create.rb": 1, "spectrast_filter.rb": 1, "spectrast_updateiRTs.py": 1, + "spectrum": 1, "speedtest.py": 1, "sph_process": 1, "sphae": 1, @@ -24232,7 +24282,7 @@ "sphinx-quickstart": 42, "spine.pl": 1, "spinner.py": 1, - "splain": 1752, + "splain": 1754, "splash": 2, "splice_site_summary.pl": 1, "spliceai": 1, @@ -24344,11 +24394,11 @@ "splitsource": 27, "splitter": 27, "splitubam": 1, - "spm_decode": 1, - "spm_encode": 1, - "spm_export_vocab": 1, - "spm_normalize": 1, - "spm_train": 1, + "spm_decode": 2, + "spm_encode": 2, + "spm_export_vocab": 2, + "spm_normalize": 2, + "spm_train": 2, "spoa": 7, "sponge": 3, "sports-league": 2, @@ -24373,7 +24423,7 @@ "sqlformat": 9, "sqlite.pl": 1, "sqlite3": 2728, - "sqlite3_analyzer": 7330, + "sqlite3_analyzer": 7355, "sqlitebrowser": 1, "sqlmetal": 16, "sqlsharp": 16, @@ -24690,7 +24740,7 @@ "stitch_impute.R": 1, "stk2ct": 1, "stl2dcm": 1, - "stl2gts": 149, + "stl2gts": 151, "stoch_genDimerRates": 1, "stochastic": 5, "stochastic-smp": 5, @@ -24719,7 +24769,7 @@ "strainy": 1, "stranger": 1, "strawk": 1, - "stream": 77, + "stream": 78, "stream-local": 41, "stream-pubmed": 316, "stream_atac": 1, @@ -24728,7 +24778,7 @@ "streamlit": 6, "streamlit.cmd": 6, "streamsam.sh": 31, - "streamzip": 1323, + "streamzip": 1325, "streme": 6, "streme_xml_to_html": 6, "stress-ng": 1, @@ -24871,6 +24921,7 @@ "superfocus_downloadDB": 1, "supermatcher": 27, "supernova2gfa": 1, + "superpose": 1, "supersim": 1, "superstr": 1, "superstr-multiparse.py": 1, @@ -25003,7 +25054,7 @@ "tab2krona.py": 1, "tab2mapper.pl": 1, "tab2ovls": 2, - "tabix": 740, + "tabix": 741, "tabix++": 24, "table2asn": 3, "table_add_column.py": 60, @@ -25013,8 +25064,8 @@ "tableschema": 1, "tablet": 1, "tabnum2id": 1, - "tabs": 7945, - "tabulate": 146, + "tabs": 7970, + "tabulate": 147, "tabulate.py": 1, "tabulator": 1, "tabutils": 1, @@ -25187,9 +25238,9 @@ "tbvcfreport": 1, "tcdemux": 1, "tcfinder": 1, - "tclsh": 7567, + "tclsh": 7592, "tclsh8.5": 473, - "tclsh8.6": 7330, + "tclsh8.6": 7355, "tcode": 27, "tcsh": 3, "td_bignet": 2, @@ -25307,16 +25358,23 @@ "testfilesystem.sh": 31, "testformat.sh": 31, "testformat2.sh": 31, + "testgrad": 1, + "testhess": 1, "testld": 2, "testld.3": 2, "testld.3.0.0": 2, "testnodes.pl": 2, "testobj": 1, + "testpair": 1, + "testpol": 1, + "testrot": 1, "testsaslauthd": 2, "testsolv": 24, "testsomatic.R": 2, "teststrandbias.R": 2, + "testsurf": 1, "testval": 1, + "testvir": 1, "tetramerfreq.sh": 31, "tex": 1, "tex4ebook": 1, @@ -25405,7 +25463,7 @@ "tiara-test": 3, "tiberius": 1, "tiberius.py": 1, - "tic": 7945, + "tic": 7970, "tiddit": 1, "tides": 1, "tidk": 1, @@ -25413,23 +25471,23 @@ "tidygff3": 1, "tidyp": 66, "tie": 1, - "tiff2bw": 5359, - "tiff2fsspec": 24, - "tiff2pdf": 5359, - "tiff2ps": 5359, - "tiff2rgba": 5359, - "tiffcmp": 5359, - "tiffcomment": 26, - "tiffcp": 5635, - "tiffcrop": 5359, - "tiffdither": 5359, - "tiffdump": 5635, - "tifffile": 30, - "tiffinfo": 5635, - "tiffmedian": 5359, - "tiffset": 5635, - "tiffsplit": 5635, - "tificc": 1081, + "tiff2bw": 5379, + "tiff2fsspec": 25, + "tiff2pdf": 5379, + "tiff2ps": 5379, + "tiff2rgba": 5379, + "tiffcmp": 5379, + "tiffcomment": 27, + "tiffcp": 5655, + "tiffcrop": 5379, + "tiffdither": 5379, + "tiffdump": 5655, + "tifffile": 31, + "tiffinfo": 5655, + "tiffmedian": 5379, + "tiffset": 5655, + "tiffsplit": 5655, + "tificc": 1082, "tigStore": 3, "tiger-hash": 12, "tigge_check": 1, @@ -25461,9 +25519,11 @@ "time_series_post_processing.py": 1, "timeout": 86, "timeout_decorator.py": 1, + "timer": 1, + "timerot": 1, "timescorealn": 1, "timetree_inference.py": 1, - "timezone-dump": 77, + "timezone-dump": 78, "timsdata.dll": 2, "tin.py": 3, "ting": 1, @@ -25483,7 +25543,7 @@ "titan-gc-prepare.py": 1, "titan.py": 1, "titration": 2, - "tjbench": 507, + "tjbench": 527, "tkconch": 1, "tkpp": 1, "tksm": 1, @@ -25514,7 +25574,7 @@ "to_upper_case.pl.bak": 1, "toco": 83, "toco_from_protos": 83, - "toe": 7945, + "toe": 7970, "tohnsw": 1, "toil": 3, "toil-cwl-runner": 3, @@ -25522,7 +25582,7 @@ "tolkein": 1, "tombo": 2, "toml2xml": 41, - "tomlq": 302, + "tomlq": 313, "tomsimilarity": 1, "tomtom": 13, "tomtom_xml_to_html": 13, @@ -25542,7 +25602,7 @@ "topology": 1, "tops-viterbi_decoding": 1, "topword.R": 1, - "torch_shm_manager": 17, + "torch_shm_manager": 19, "torchapp": 1, "torchapp-imageclassifier": 1, "torchbiggraph_config": 2, @@ -25554,8 +25614,9 @@ "torchbiggraph_import_from_tsv": 2, "torchbiggraph_partitionserver": 2, "torchbiggraph_train": 2, - "torchfrtrace": 1, - "torchrun": 45, + "torchfrtrace": 3, + "torchrun": 47, + "torsfit": 1, "touch": 86, "toulligqc": 1, "tox": 2, @@ -25568,8 +25629,8 @@ "tpp_hostname": 2, "tpp_models.pl": 2, "tpptray.bat": 2, - "tput": 7945, - "tqdm": 412, + "tput": 7970, + "tqdm": 416, "tr": 86, "tr-trimmer": 1, "trace_comment": 2, @@ -25598,8 +25659,8 @@ "tradis_merge_plots": 2, "tradis_plot": 2, "trafoXML_visualize.py": 1, - "train": 1, - "train.py": 4, + "train": 2, + "train.py": 5, "train.sh": 1, "trainGlimmerHMM": 16, "train_amplify": 1, @@ -25636,14 +25697,14 @@ "transferFilesToRemoteComputers.pl": 1, "transfer_annotation_to_groups": 7, "transfig": 2, - "transform": 149, + "transform": 151, "transform-coverage-profile": 1, "transform_biom.py": 1, "transform_coordinate_matrices.py": 1, "transform_gfa.py": 1, - "transformers-cli": 4, + "transformers-cli": 5, "transformseq": 13, - "transicc": 1081, + "transicc": 1082, "transit": 1, "transition_counter": 1, "transl": 1, @@ -25671,7 +25732,7 @@ "transseq.pl": 1, "transterm": 1, "trawler": 4, - "tred": 204, + "tred": 206, "tree-events-dlc": 1, "tree-events-dlcpar": 1, "tree-mean-lengths": 1, @@ -25756,6 +25817,7 @@ "trimal": 19, "trimal.yaml": 1, "trimends": 2, + "trimesh": 1, "trimest": 27, "trimfrg": 2, "trimmer.py": 1, @@ -25799,7 +25861,7 @@ "tryptic.py": 1, "ts": 3, "tsebra.py": 3, - "tset": 7945, + "tset": 7970, "tskit": 7, "tsort": 86, "tsp": 2, @@ -25836,7 +25898,7 @@ "ttree": 66, "tts": 5, "tttrlib": 1, - "ttx": 464, + "ttx": 465, "tty": 86, "tune": 1, "turbocor": 1, @@ -25850,7 +25912,7 @@ "twoBitToFa": 19, "twofeat": 27, "twopaco": 3, - "twopi": 204, + "twopi": 206, "twstats": 1, "txUnique": 6, "tximport.R": 1, @@ -25924,12 +25986,13 @@ "undexar": 1, "undexqv": 1, "undexta": 3, - "undill": 68, + "undill": 70, "unexpand": 86, "unfazed": 1, "unfiltered_plot.R": 1, - "unflatten": 204, + "unflatten": 206, "unicode2ascii.sh": 31, + "unicore": 1, "unicycler": 8, "unicycler_align": 4, "unicycler_check": 4, @@ -25976,12 +26039,12 @@ "unitig-counter": 1, "unitig_distance": 1, "unitigger": 4, - "unix-lpr.sh": 106, + "unix-lpr.sh": 107, "unix2dos": 2, "unix2mac": 2, "unlink": 86, - "unlz4": 3556, - "unlzma": 7760, + "unlz4": 3559, + "unlzma": 7763, "unmapped2anchors.py": 1, "unmerge": 1, "unmerge-paired-reads.sh": 2, @@ -25999,7 +26062,7 @@ "unstarch-typical": 15, "untangle": 2, "unweight_fasta.py": 1, - "unxz": 7984, + "unxz": 7987, "unzip": 32, "unzip.sh": 30, "unziphdf5": 1, @@ -26007,7 +26070,7 @@ "unzipont": 1, "unzipont_dir": 1, "unzipsfx": 25, - "unzstd": 5392, + "unzstd": 5414, "update-blastdb.py": 2, "update-serotypefinder-db": 1, "update-sort-bed-migrate-candidates": 15, @@ -26081,7 +26144,7 @@ "utmpdump": 13, "utrgff2gbrowse.pl": 15, "utrrnaseq": 13, - "uuclient": 5951, + "uuclient": 5973, "uuid": 38, "uuid-config": 38, "uuidgen": 13, @@ -26107,6 +26170,7 @@ "vadr-run.sh": 1, "vafator": 1, "vafator2decifer": 1, + "valence": 1, "valet.py": 1, "validate": 5, "validate-docstrings": 3, @@ -26576,6 +26640,9 @@ "vftovp": 1, "vg": 5, "vgan": 1, + "vibbig": 1, + "vibrate": 1, + "vibrot": 1, "vidir": 3, "viewMSA.pl": 4, "view_xargs.sh": 1, @@ -26625,7 +26692,7 @@ "viz.R": 1, "vk": 1, "vkmz": 1, - "vmake": 130, + "vmake": 131, "vmatch": 3, "vmatchselect": 3, "vmcvmrnme": 1, @@ -26646,12 +26713,12 @@ "vpl2ovp": 1, "vpl2vpl": 1, "vptovf": 1, - "vpxdec": 11, - "vpxenc": 11, + "vpxdec": 12, + "vpxenc": 12, "vsearch": 31, "vseqinfo": 3, "vseqselect": 3, - "vshow": 130, + "vshow": 131, "vsnp3_alignment_vcf.py": 1, "vsnp3_annotation.py": 1, "vsnp3_assembly.py": 1, @@ -26752,7 +26819,7 @@ "watchmedo": 10, "watden": 2, "water": 27, - "wayland-scanner": 5, + "wayland-scanner": 6, "wb": 2, "wbuild": 2, "wc": 86, @@ -26767,9 +26834,9 @@ "weave": 2, "webcheck.sh": 31, "weblogo": 13, - "webpinfo": 2662, - "webpmux": 2671, - "webpng": 246, + "webpinfo": 2663, + "webpmux": 2672, + "webpng": 248, "webserver-results.body": 3, "webserver-results.head": 15, "webserver-results.tail": 15, @@ -26789,16 +26856,16 @@ "wgMLST": 1, "wgatools": 1, "wgdi": 1, - "wget": 453, + "wget": 454, "wgetdir": 1, "wgmlst": 1, "wgs2ncbi": 1, - "wgsim": 539, - "wgsim_eval.pl": 539, + "wgsim": 540, + "wgsim_eval.pl": 540, "wham": 1, "whamg": 1, "whatshap": 14, - "wheel": 3840, + "wheel": 3844, "wheezy.template": 2, "whereis": 13, "which": 1, @@ -26845,9 +26912,9 @@ "wipertools": 1, "wiq.py": 1, "wisestork": 1, - "wish": 7567, + "wish": 7592, "wish8.5": 473, - "wish8.6": 7330, + "wish8.6": 7355, "wkhtmltoimage": 2, "wkhtmltopdf": 2, "wlmscpfs": 1, @@ -26898,7 +26965,7 @@ "write_tfrecord_species.py": 1, "writedb_entry": 1, "writedb_unit_test": 5, - "wrjpgcom": 5889, + "wrjpgcom": 5909, "ws": 2, "wsdl": 16, "wsdl2": 16, @@ -26933,86 +27000,86 @@ "wxrc-3.0": 1, "wxrc-3.1": 4, "wxrc-3.2": 3, - "x264": 12, - "x265": 11, + "x264": 13, + "x265": 12, "x86_64": 13, - "x86_64-conda-linux-gnu-addr2line": 3413, - "x86_64-conda-linux-gnu-ar": 3413, - "x86_64-conda-linux-gnu-as": 3413, - "x86_64-conda-linux-gnu-c++": 3383, - "x86_64-conda-linux-gnu-c++filt": 3413, - "x86_64-conda-linux-gnu-c89": 3367, - "x86_64-conda-linux-gnu-c99": 3367, - "x86_64-conda-linux-gnu-cc": 3396, + "x86_64-conda-linux-gnu-addr2line": 3432, + "x86_64-conda-linux-gnu-ar": 3432, + "x86_64-conda-linux-gnu-as": 3432, + "x86_64-conda-linux-gnu-c++": 3402, + "x86_64-conda-linux-gnu-c++filt": 3432, + "x86_64-conda-linux-gnu-c89": 3386, + "x86_64-conda-linux-gnu-c99": 3386, + "x86_64-conda-linux-gnu-cc": 3415, "x86_64-conda-linux-gnu-clang": 1, "x86_64-conda-linux-gnu-clang++": 1, "x86_64-conda-linux-gnu-clang++.cfg": 1, "x86_64-conda-linux-gnu-clang.cfg": 1, - "x86_64-conda-linux-gnu-cpp": 3396, + "x86_64-conda-linux-gnu-cpp": 3415, "x86_64-conda-linux-gnu-ct-ng.config": 573, - "x86_64-conda-linux-gnu-dwp": 3413, - "x86_64-conda-linux-gnu-elfedit": 3413, - "x86_64-conda-linux-gnu-f95": 3374, - "x86_64-conda-linux-gnu-g++": 3383, - "x86_64-conda-linux-gnu-gcc": 3396, - "x86_64-conda-linux-gnu-gcc-ar": 3396, - "x86_64-conda-linux-gnu-gcc-nm": 3396, - "x86_64-conda-linux-gnu-gcc-ranlib": 3396, - "x86_64-conda-linux-gnu-gcov": 3396, - "x86_64-conda-linux-gnu-gcov-dump": 3396, - "x86_64-conda-linux-gnu-gcov-tool": 3396, - "x86_64-conda-linux-gnu-gfortran": 3374, + "x86_64-conda-linux-gnu-dwp": 3432, + "x86_64-conda-linux-gnu-elfedit": 3432, + "x86_64-conda-linux-gnu-f95": 3393, + "x86_64-conda-linux-gnu-g++": 3402, + "x86_64-conda-linux-gnu-gcc": 3415, + "x86_64-conda-linux-gnu-gcc-ar": 3415, + "x86_64-conda-linux-gnu-gcc-nm": 3415, + "x86_64-conda-linux-gnu-gcc-ranlib": 3415, + "x86_64-conda-linux-gnu-gcov": 3415, + "x86_64-conda-linux-gnu-gcov-dump": 3415, + "x86_64-conda-linux-gnu-gcov-tool": 3415, + "x86_64-conda-linux-gnu-gfortran": 3393, "x86_64-conda-linux-gnu-gfortran.bin": 575, - "x86_64-conda-linux-gnu-gprof": 3413, - "x86_64-conda-linux-gnu-ld": 5720, - "x86_64-conda-linux-gnu-ld.bfd": 3413, - "x86_64-conda-linux-gnu-ld.gold": 3413, - "x86_64-conda-linux-gnu-nm": 3413, - "x86_64-conda-linux-gnu-objcopy": 3413, - "x86_64-conda-linux-gnu-objdump": 3413, - "x86_64-conda-linux-gnu-pkg-config": 71, - "x86_64-conda-linux-gnu-ranlib": 3413, - "x86_64-conda-linux-gnu-readelf": 3413, - "x86_64-conda-linux-gnu-size": 3413, - "x86_64-conda-linux-gnu-strings": 3413, - "x86_64-conda-linux-gnu-strip": 3413, - "x86_64-conda-linux-gnu.cfg": 13, - "x86_64-conda_cos6-linux-gnu-addr2line": 4180, - "x86_64-conda_cos6-linux-gnu-ar": 4180, - "x86_64-conda_cos6-linux-gnu-as": 4180, - "x86_64-conda_cos6-linux-gnu-c++": 4163, - "x86_64-conda_cos6-linux-gnu-c++filt": 4180, - "x86_64-conda_cos6-linux-gnu-c89": 3367, - "x86_64-conda_cos6-linux-gnu-c99": 3367, - "x86_64-conda_cos6-linux-gnu-cc": 4177, - "x86_64-conda_cos6-linux-gnu-cpp": 4177, + "x86_64-conda-linux-gnu-gprof": 3432, + "x86_64-conda-linux-gnu-ld": 5745, + "x86_64-conda-linux-gnu-ld.bfd": 3432, + "x86_64-conda-linux-gnu-ld.gold": 3432, + "x86_64-conda-linux-gnu-nm": 3432, + "x86_64-conda-linux-gnu-objcopy": 3432, + "x86_64-conda-linux-gnu-objdump": 3432, + "x86_64-conda-linux-gnu-pkg-config": 72, + "x86_64-conda-linux-gnu-ranlib": 3432, + "x86_64-conda-linux-gnu-readelf": 3432, + "x86_64-conda-linux-gnu-size": 3432, + "x86_64-conda-linux-gnu-strings": 3432, + "x86_64-conda-linux-gnu-strip": 3432, + "x86_64-conda-linux-gnu.cfg": 33, + "x86_64-conda_cos6-linux-gnu-addr2line": 4199, + "x86_64-conda_cos6-linux-gnu-ar": 4199, + "x86_64-conda_cos6-linux-gnu-as": 4199, + "x86_64-conda_cos6-linux-gnu-c++": 4182, + "x86_64-conda_cos6-linux-gnu-c++filt": 4199, + "x86_64-conda_cos6-linux-gnu-c89": 3386, + "x86_64-conda_cos6-linux-gnu-c99": 3386, + "x86_64-conda_cos6-linux-gnu-cc": 4196, + "x86_64-conda_cos6-linux-gnu-cpp": 4196, "x86_64-conda_cos6-linux-gnu-ct-ng.config": 1354, - "x86_64-conda_cos6-linux-gnu-dwp": 4180, - "x86_64-conda_cos6-linux-gnu-elfedit": 4180, - "x86_64-conda_cos6-linux-gnu-f95": 4143, - "x86_64-conda_cos6-linux-gnu-g++": 4163, - "x86_64-conda_cos6-linux-gnu-gcc": 4177, - "x86_64-conda_cos6-linux-gnu-gcc-ar": 4177, - "x86_64-conda_cos6-linux-gnu-gcc-nm": 4177, - "x86_64-conda_cos6-linux-gnu-gcc-ranlib": 4177, - "x86_64-conda_cos6-linux-gnu-gcov": 4176, - "x86_64-conda_cos6-linux-gnu-gcov-dump": 4176, - "x86_64-conda_cos6-linux-gnu-gcov-tool": 4176, - "x86_64-conda_cos6-linux-gnu-gfortran": 4143, + "x86_64-conda_cos6-linux-gnu-dwp": 4199, + "x86_64-conda_cos6-linux-gnu-elfedit": 4199, + "x86_64-conda_cos6-linux-gnu-f95": 4162, + "x86_64-conda_cos6-linux-gnu-g++": 4182, + "x86_64-conda_cos6-linux-gnu-gcc": 4196, + "x86_64-conda_cos6-linux-gnu-gcc-ar": 4196, + "x86_64-conda_cos6-linux-gnu-gcc-nm": 4196, + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": 4196, + "x86_64-conda_cos6-linux-gnu-gcov": 4195, + "x86_64-conda_cos6-linux-gnu-gcov-dump": 4195, + "x86_64-conda_cos6-linux-gnu-gcov-tool": 4195, + "x86_64-conda_cos6-linux-gnu-gfortran": 4162, "x86_64-conda_cos6-linux-gnu-gfortran.bin": 1344, - "x86_64-conda_cos6-linux-gnu-gprof": 4180, - "x86_64-conda_cos6-linux-gnu-ld": 6554, - "x86_64-conda_cos6-linux-gnu-ld.bfd": 4180, - "x86_64-conda_cos6-linux-gnu-ld.gold": 4180, - "x86_64-conda_cos6-linux-gnu-nm": 4180, - "x86_64-conda_cos6-linux-gnu-objcopy": 4180, - "x86_64-conda_cos6-linux-gnu-objdump": 4180, + "x86_64-conda_cos6-linux-gnu-gprof": 4199, + "x86_64-conda_cos6-linux-gnu-ld": 6579, + "x86_64-conda_cos6-linux-gnu-ld.bfd": 4199, + "x86_64-conda_cos6-linux-gnu-ld.gold": 4199, + "x86_64-conda_cos6-linux-gnu-nm": 4199, + "x86_64-conda_cos6-linux-gnu-objcopy": 4199, + "x86_64-conda_cos6-linux-gnu-objdump": 4199, "x86_64-conda_cos6-linux-gnu-pkg-config": 6, - "x86_64-conda_cos6-linux-gnu-ranlib": 4180, - "x86_64-conda_cos6-linux-gnu-readelf": 4180, - "x86_64-conda_cos6-linux-gnu-size": 4180, - "x86_64-conda_cos6-linux-gnu-strings": 4180, - "x86_64-conda_cos6-linux-gnu-strip": 4180, + "x86_64-conda_cos6-linux-gnu-ranlib": 4199, + "x86_64-conda_cos6-linux-gnu-readelf": 4199, + "x86_64-conda_cos6-linux-gnu-size": 4199, + "x86_64-conda_cos6-linux-gnu-strings": 4199, + "x86_64-conda_cos6-linux-gnu-strip": 4199, "x86_64-conda_cos7-linux-gnu-ld": 24, "x86_64-unknown-linux-gnu-pkg-config": 1, "xa2multi.pl": 164, @@ -27040,7 +27107,7 @@ "xgboost": 31, "xgboost.dll": 1, "xgboost.lib": 1, - "xgettext": 5329, + "xgettext": 5330, "xgui": 2, "xhmm": 1, "xinteract": 2, @@ -27054,7 +27121,7 @@ "xmfa2maf": 4, "xmfa2maf.pl": 1, "xml": 1, - "xml2-config": 5475, + "xml2-config": 5482, "xml2-config.bak": 34, "xml2dcm": 1, "xml2dsr": 1, @@ -27067,10 +27134,10 @@ "xml_spellcheck": 64, "xml_split": 64, "xml_to_bas.pl": 3, - "xmlcatalog": 5475, + "xmlcatalog": 5482, "xmlget": 23, "xmlindent": 1, - "xmllint": 5475, + "xmllint": 5482, "xmlpatterns": 260, "xmlpatterns-qt4": 3, "xmlpatternsvalidator": 260, @@ -27089,7 +27156,7 @@ "xpore": 1, "xpore-dataprep": 1, "xpore-diffmod": 1, - "xq": 302, + "xq": 313, "xrdacctest": 1, "xrdadler32": 1, "xrdcopy": 1, @@ -27112,8 +27179,10 @@ "xsltproc_lite": 7, "xstreme": 2, "xstreme_html_to_tsv": 2, - "xsubpp": 1752, + "xsubpp": 1754, "xsv": 1, + "xtalfit": 1, + "xtalmin": 1, "xtandem": 3, "xtb": 1, "xtea": 1, @@ -27128,23 +27197,27 @@ "xtractcolv": 1, "xtractore": 1, "xtractprotos": 4, - "xxh128sum": 38, - "xxh32sum": 38, - "xxh64sum": 38, - "xxhsum": 39, + "xxh128sum": 39, + "xxh32sum": 39, + "xxh64sum": 39, + "xxhsum": 40, "xy-plot": 88, "xyalign": 1, "xyz_sfetch": 1, - "xz": 7984, - "xzcat": 7760, - "xzcmp": 7760, - "xzdec": 7760, - "xzdiff": 7760, - "xzegrep": 7760, - "xzfgrep": 7760, - "xzgrep": 7760, - "xzless": 7760, - "xzmore": 7760, + "xyzedit": 1, + "xyzint": 1, + "xyzmol2": 1, + "xyzpdb": 1, + "xz": 7987, + "xzcat": 7763, + "xzcmp": 7763, + "xzdec": 7763, + "xzdiff": 7763, + "xzegrep": 7763, + "xzfgrep": 7763, + "xzgrep": 7763, + "xzless": 7763, + "xzmore": 7763, "y2racc": 7, "yacc": 4, "yacht": 1, @@ -27179,7 +27252,7 @@ "yoyo": 3, "yoyo-migrate": 3, "yplan": 1, - "yq": 302, + "yq": 313, "ytasm": 1, "yte": 68, "zagros": 1, @@ -27199,21 +27272,21 @@ "zff2gff3.pl": 2, "zfgrep": 23, "zforce": 23, - "zfp": 29, + "zfp": 30, "zga": 1, "zgrep": 23, "zic": 45, "zip": 17, "zipHomerResults.pl": 5, "zipcloak": 3, - "zipcmp": 98, - "zipdetails": 1752, + "zipcmp": 99, + "zipdetails": 1754, "zipgrep": 25, "zipinfo": 25, - "zipmerge": 98, + "zipmerge": 99, "zipnote": 3, "zipsplit": 3, - "ziptool": 98, + "ziptool": 99, "zless": 5, "zlib.net.dll": 4, "zlib_decompress": 5, @@ -27222,9 +27295,9 @@ "znew": 23, "zol": 2, "zoom": 1, - "zoom2sam.pl": 538, - "zopfli": 29, - "zopflipng": 29, + "zoom2sam.pl": 539, + "zopfli": 30, + "zopflipng": 30, "zorro": 1, "zorro_dist.pl": 1, "zpca-counts": 1, @@ -27232,10 +27305,10 @@ "zrun": 3, "zsh": 3, "zsh-5.8": 3, - "zstd": 5392, - "zstdcat": 5392, - "zstdgrep": 5190, - "zstdless": 5190, - "zstdmt": 5392, + "zstd": 5414, + "zstdcat": 5414, + "zstdgrep": 5212, + "zstdless": 5212, + "zstdmt": 5414, "ztr_dump": 2 } \ No newline at end of file diff --git a/quay.io/biocontainers/a/allhic:0.9.14--he881be0_0.json b/quay.io/biocontainers/a/allhic:0.9.14--he881be0_0.json new file mode 100644 index 0000000..c424cc6 --- /dev/null +++ b/quay.io/biocontainers/a/allhic:0.9.14--he881be0_0.json @@ -0,0 +1,3 @@ +{ + "allhic": "/usr/local/bin/allhic" +} \ No newline at end of file diff --git a/quay.io/biocontainers/a/amplicontyper:0.1.28--pyhdfd78af_0.json b/quay.io/biocontainers/a/amplicontyper:0.1.28--pyhdfd78af_0.json new file mode 100644 index 0000000..20b2d5a --- /dev/null +++ b/quay.io/biocontainers/a/amplicontyper:0.1.28--pyhdfd78af_0.json @@ -0,0 +1,133 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.12": "/usr/local/bin/2to3-3.12", + "ace2sam": "/usr/local/bin/ace2sam", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "annot-tsv": "/usr/local/bin/annot-tsv", + "bgzip": "/usr/local/bin/bgzip", + "blast2sam.pl": "/usr/local/bin/blast2sam.pl", + "bowtie2sam.pl": "/usr/local/bin/bowtie2sam.pl", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "check_for_update.py": "/usr/local/bin/check_for_update.py", + "classifier_report.py": "/usr/local/bin/classifier_report.py", + "classify": "/usr/local/bin/classify", + "classify.py": "/usr/local/bin/classify.py", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl-config": "/usr/local/bin/curl-config", + "data_classes.py": "/usr/local/bin/data_classes.py", + "export2sam.pl": "/usr/local/bin/export2sam.pl", + "f2py": "/usr/local/bin/f2py", + "fasta-sanitize.pl": "/usr/local/bin/fasta-sanitize.pl", + "genotyper_utilities": "/usr/local/bin/genotyper_utilities", + "genotyper_utilities.py": "/usr/local/bin/genotyper_utilities.py", + "gss-client": "/usr/local/bin/gss-client", + "hierarchy_utils.py": "/usr/local/bin/hierarchy_utils.py", + "html_head.txt": "/usr/local/bin/html_head.txt", + "htsfile": "/usr/local/bin/htsfile", + "idle3": "/usr/local/bin/idle3", + "idle3.12": "/usr/local/bin/idle3.12", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "input_processing.py": "/usr/local/bin/input_processing.py", + "inputs_validation.py": "/usr/local/bin/inputs_validation.py", + "interpolate_sam.pl": "/usr/local/bin/interpolate_sam.pl", + "k5srvutil": "/usr/local/bin/k5srvutil", + "k8": "/usr/local/bin/k8", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "map.py": "/usr/local/bin/map.py", + "maq2sam-long": "/usr/local/bin/maq2sam-long", + "maq2sam-short": "/usr/local/bin/maq2sam-short", + "md5fa": "/usr/local/bin/md5fa", + "md5sum-lite": "/usr/local/bin/md5sum-lite", + "minimap2": "/usr/local/bin/minimap2", + "model_manager.py": "/usr/local/bin/model_manager.py", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "normalizer": "/usr/local/bin/normalizer", + "novo2sam.pl": "/usr/local/bin/novo2sam.pl", + "numpy-config": "/usr/local/bin/numpy-config", + "openssl": "/usr/local/bin/openssl", + "paftools.js": "/usr/local/bin/paftools.js", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "plot-ampliconstats": "/usr/local/bin/plot-ampliconstats", + "plot-bamstats": "/usr/local/bin/plot-bamstats", + "psl2sam.pl": "/usr/local/bin/psl2sam.pl", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.12": "/usr/local/bin/pydoc3.12", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.12": "/usr/local/bin/python3.12", + "python3.12-config": "/usr/local/bin/python3.12-config", + "read_classifier.py": "/usr/local/bin/read_classifier.py", + "reporting_classes.py": "/usr/local/bin/reporting_classes.py", + "reset": "/usr/local/bin/reset", + "sam2vcf.pl": "/usr/local/bin/sam2vcf.pl", + "samtools": "/usr/local/bin/samtools", + "samtools.pl": "/usr/local/bin/samtools.pl", + "sclient": "/usr/local/bin/sclient", + "sdust": "/usr/local/bin/sdust", + "seq_cache_populate.pl": "/usr/local/bin/seq_cache_populate.pl", + "sim_client": "/usr/local/bin/sim_client", + "soap2sam.pl": "/usr/local/bin/soap2sam.pl", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabix": "/usr/local/bin/tabix", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tqdm": "/usr/local/bin/tqdm", + "train": "/usr/local/bin/train", + "train.py": "/usr/local/bin/train.py", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wgsim": "/usr/local/bin/wgsim", + "wgsim_eval.pl": "/usr/local/bin/wgsim_eval.pl", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "zoom2sam.pl": "/usr/local/bin/zoom2sam.pl", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-bettr:1.2.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-bettr:1.2.0--r44hdfd78af_0.json new file mode 100644 index 0000000..1d98155 --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-bettr:1.2.0--r44hdfd78af_0.json @@ -0,0 +1,225 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "activate-global-python-argcomplete": "/usr/local/bin/activate-global-python-argcomplete", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "installBiocDataPackage.sh": "/usr/local/bin/installBiocDataPackage.sh", + "jpegtran": "/usr/local/bin/jpegtran", + "jq": "/usr/local/bin/jq", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "onig-config": "/usr/local/bin/onig-config", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pandoc": "/usr/local/bin/pandoc", + "pandoc-lua": "/usr/local/bin/pandoc-lua", + "pandoc-server": "/usr/local/bin/pandoc-server", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python-argcomplete-check-easy-install-script": "/usr/local/bin/python-argcomplete-check-easy-install-script", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "register-python-argcomplete": "/usr/local/bin/register-python-argcomplete", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tomlq": "/usr/local/bin/tomlq", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xq": "/usr/local/bin/xq", + "yq": "/usr/local/bin/yq", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-bioga:1.0.0--r44he5774e6_0.json b/quay.io/biocontainers/b/bioconductor-bioga:1.0.0--r44he5774e6_0.json new file mode 100644 index 0000000..b1408c7 --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-bioga:1.0.0--r44he5774e6_0.json @@ -0,0 +1,422 @@ +{ + "Magick++-config": "/usr/local/bin/Magick++-config", + "MagickCore-config": "/usr/local/bin/MagickCore-config", + "MagickWand-config": "/usr/local/bin/MagickWand-config", + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "SvtAv1EncApp": "/usr/local/bin/SvtAv1EncApp", + "activate-global-python-argcomplete": "/usr/local/bin/activate-global-python-argcomplete", + "acyclic": "/usr/local/bin/acyclic", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "animate": "/usr/local/bin/animate", + "annotate": "/usr/local/bin/annotate", + "aomdec": "/usr/local/bin/aomdec", + "aomenc": "/usr/local/bin/aomenc", + "bcomps": "/usr/local/bin/bcomps", + "bdftogd": "/usr/local/bin/bdftogd", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "ccomps": "/usr/local/bin/ccomps", + "circo": "/usr/local/bin/circo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "cllayerinfo": "/usr/local/bin/cllayerinfo", + "cluster": "/usr/local/bin/cluster", + "compare": "/usr/local/bin/compare", + "compile_et": "/usr/local/bin/compile_et", + "composite": "/usr/local/bin/composite", + "conjure": "/usr/local/bin/conjure", + "convert": "/usr/local/bin/convert", + "corelist": "/usr/local/bin/corelist", + "cpan": "/usr/local/bin/cpan", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "cwebp": "/usr/local/bin/cwebp", + "dav1d": "/usr/local/bin/dav1d", + "dec265": "/usr/local/bin/dec265", + "delaunay": "/usr/local/bin/delaunay", + "derb": "/usr/local/bin/derb", + "diffimg": "/usr/local/bin/diffimg", + "dijkstra": "/usr/local/bin/dijkstra", + "display": "/usr/local/bin/display", + "djpeg": "/usr/local/bin/djpeg", + "dot": "/usr/local/bin/dot", + "dot2gxl": "/usr/local/bin/dot2gxl", + "dot_builtins": "/usr/local/bin/dot_builtins", + "dvipdf": "/usr/local/bin/dvipdf", + "dwebp": "/usr/local/bin/dwebp", + "edgepaint": "/usr/local/bin/edgepaint", + "enc2xs": "/usr/local/bin/enc2xs", + "encguess": "/usr/local/bin/encguess", + "eps2eps": "/usr/local/bin/eps2eps", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "fdp": "/usr/local/bin/fdp", + "ffmpeg": "/usr/local/bin/ffmpeg", + "ffprobe": "/usr/local/bin/ffprobe", + "fftw-wisdom": "/usr/local/bin/fftw-wisdom", + "fftw-wisdom-to-conf": "/usr/local/bin/fftw-wisdom-to-conf", + "fftwf-wisdom": "/usr/local/bin/fftwf-wisdom", + "fftwl-wisdom": "/usr/local/bin/fftwl-wisdom", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "gc": "/usr/local/bin/gc", + "gd2copypal": "/usr/local/bin/gd2copypal", + "gd2togif": "/usr/local/bin/gd2togif", + "gd2topng": "/usr/local/bin/gd2topng", + "gdcmpgif": "/usr/local/bin/gdcmpgif", + "gdk-pixbuf-csource": "/usr/local/bin/gdk-pixbuf-csource", + "gdk-pixbuf-pixdata": "/usr/local/bin/gdk-pixbuf-pixdata", + "gdk-pixbuf-query-loaders": "/usr/local/bin/gdk-pixbuf-query-loaders", + "gdk-pixbuf-thumbnailer": "/usr/local/bin/gdk-pixbuf-thumbnailer", + "gdparttopng": "/usr/local/bin/gdparttopng", + "gdtopng": "/usr/local/bin/gdtopng", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gif2rgb": "/usr/local/bin/gif2rgb", + "gif2webp": "/usr/local/bin/gif2webp", + "gifbuild": "/usr/local/bin/gifbuild", + "gifclrmp": "/usr/local/bin/gifclrmp", + "giffix": "/usr/local/bin/giffix", + "giftext": "/usr/local/bin/giftext", + "giftogd2": "/usr/local/bin/giftogd2", + "giftool": "/usr/local/bin/giftool", + "gml2gv": "/usr/local/bin/gml2gv", + "graphml2gv": "/usr/local/bin/graphml2gv", + "gs": "/usr/local/bin/gs", + "gsbj": "/usr/local/bin/gsbj", + "gsdj": "/usr/local/bin/gsdj", + "gsdj500": "/usr/local/bin/gsdj500", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gslj": "/usr/local/bin/gslj", + "gslp": "/usr/local/bin/gslp", + "gsnd": "/usr/local/bin/gsnd", + "gss-client": "/usr/local/bin/gss-client", + "gtk-builder-convert": "/usr/local/bin/gtk-builder-convert", + "gtk-demo": "/usr/local/bin/gtk-demo", + "gtk-query-immodules-2.0": "/usr/local/bin/gtk-query-immodules-2.0", + "gts-config": "/usr/local/bin/gts-config", + "gts2dxf": "/usr/local/bin/gts2dxf", + "gts2oogl": "/usr/local/bin/gts2oogl", + "gts2stl": "/usr/local/bin/gts2stl", + "gtscheck": "/usr/local/bin/gtscheck", + "gtscompare": "/usr/local/bin/gtscompare", + "gtstemplate": "/usr/local/bin/gtstemplate", + "gv2gml": "/usr/local/bin/gv2gml", + "gv2gxl": "/usr/local/bin/gv2gxl", + "gvcolor": "/usr/local/bin/gvcolor", + "gvgen": "/usr/local/bin/gvgen", + "gvmap": "/usr/local/bin/gvmap", + "gvmap.sh": "/usr/local/bin/gvmap.sh", + "gvpack": "/usr/local/bin/gvpack", + "gvpr": "/usr/local/bin/gvpr", + "gxl2dot": "/usr/local/bin/gxl2dot", + "gxl2gv": "/usr/local/bin/gxl2gv", + "h264dec": "/usr/local/bin/h264dec", + "h264enc": "/usr/local/bin/h264enc", + "h2ph": "/usr/local/bin/h2ph", + "h2xs": "/usr/local/bin/h2xs", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "hwloc-annotate": "/usr/local/bin/hwloc-annotate", + "hwloc-bind": "/usr/local/bin/hwloc-bind", + "hwloc-calc": "/usr/local/bin/hwloc-calc", + "hwloc-compress-dir": "/usr/local/bin/hwloc-compress-dir", + "hwloc-diff": "/usr/local/bin/hwloc-diff", + "hwloc-distrib": "/usr/local/bin/hwloc-distrib", + "hwloc-gather-cpuid": "/usr/local/bin/hwloc-gather-cpuid", + "hwloc-gather-topology": "/usr/local/bin/hwloc-gather-topology", + "hwloc-info": "/usr/local/bin/hwloc-info", + "hwloc-ls": "/usr/local/bin/hwloc-ls", + "hwloc-patch": "/usr/local/bin/hwloc-patch", + "hwloc-ps": "/usr/local/bin/hwloc-ps", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "identify": "/usr/local/bin/identify", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "img2webp": "/usr/local/bin/img2webp", + "import": "/usr/local/bin/import", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "installBiocDataPackage.sh": "/usr/local/bin/installBiocDataPackage.sh", + "instmodsh": "/usr/local/bin/instmodsh", + "jpegtran": "/usr/local/bin/jpegtran", + "jq": "/usr/local/bin/jq", + "json_pp": "/usr/local/bin/json_pp", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "lame": "/usr/local/bin/lame", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libnetcfg": "/usr/local/bin/libnetcfg", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "lprsetup.sh": "/usr/local/bin/lprsetup.sh", + "lstopo": "/usr/local/bin/lstopo", + "lstopo-no-graphics": "/usr/local/bin/lstopo-no-graphics", + "magick": "/usr/local/bin/magick", + "magick-script": "/usr/local/bin/magick-script", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "mm2gv": "/usr/local/bin/mm2gv", + "mogrify": "/usr/local/bin/mogrify", + "montage": "/usr/local/bin/montage", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "neato": "/usr/local/bin/neato", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "nop": "/usr/local/bin/nop", + "onig-config": "/usr/local/bin/onig-config", + "openssl": "/usr/local/bin/openssl", + "opj_compress": "/usr/local/bin/opj_compress", + "opj_decompress": "/usr/local/bin/opj_decompress", + "opj_dump": "/usr/local/bin/opj_dump", + "osage": "/usr/local/bin/osage", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pandoc": "/usr/local/bin/pandoc", + "pandoc-lua": "/usr/local/bin/pandoc-lua", + "pandoc-server": "/usr/local/bin/pandoc-server", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "patchwork": "/usr/local/bin/patchwork", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pdf2dsc": "/usr/local/bin/pdf2dsc", + "pdf2ps": "/usr/local/bin/pdf2ps", + "perl": "/usr/local/bin/perl", + "perl5.32.1": "/usr/local/bin/perl5.32.1", + "perlbug": "/usr/local/bin/perlbug", + "perldoc": "/usr/local/bin/perldoc", + "perlivp": "/usr/local/bin/perlivp", + "perlthanks": "/usr/local/bin/perlthanks", + "pf2afm": "/usr/local/bin/pf2afm", + "pfbtopfa": "/usr/local/bin/pfbtopfa", + "piconv": "/usr/local/bin/piconv", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkg-config": "/usr/local/bin/pkg-config", + "pkg-config.bin": "/usr/local/bin/pkg-config.bin", + "pkgdata": "/usr/local/bin/pkgdata", + "pl2pm": "/usr/local/bin/pl2pm", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "pngtogd": "/usr/local/bin/pngtogd", + "pngtogd2": "/usr/local/bin/pngtogd2", + "pod2html": "/usr/local/bin/pod2html", + "pod2man": "/usr/local/bin/pod2man", + "pod2text": "/usr/local/bin/pod2text", + "pod2usage": "/usr/local/bin/pod2usage", + "podchecker": "/usr/local/bin/podchecker", + "pphs": "/usr/local/bin/pphs", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "printafm": "/usr/local/bin/printafm", + "protoc": "/usr/local/bin/protoc", + "protoc-28.2.0": "/usr/local/bin/protoc-28.2.0", + "prove": "/usr/local/bin/prove", + "prune": "/usr/local/bin/prune", + "ps2ascii": "/usr/local/bin/ps2ascii", + "ps2epsi": "/usr/local/bin/ps2epsi", + "ps2pdf": "/usr/local/bin/ps2pdf", + "ps2pdf12": "/usr/local/bin/ps2pdf12", + "ps2pdf13": "/usr/local/bin/ps2pdf13", + "ps2pdf14": "/usr/local/bin/ps2pdf14", + "ps2pdfwr": "/usr/local/bin/ps2pdfwr", + "ps2ps": "/usr/local/bin/ps2ps", + "ps2ps2": "/usr/local/bin/ps2ps2", + "ptar": "/usr/local/bin/ptar", + "ptardiff": "/usr/local/bin/ptardiff", + "ptargrep": "/usr/local/bin/ptargrep", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python-argcomplete-check-easy-install-script": "/usr/local/bin/python-argcomplete-check-easy-install-script", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "rav1e": "/usr/local/bin/rav1e", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "register-python-argcomplete": "/usr/local/bin/register-python-argcomplete", + "reset": "/usr/local/bin/reset", + "rsvg-convert": "/usr/local/bin/rsvg-convert", + "sccmap": "/usr/local/bin/sccmap", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sfdp": "/usr/local/bin/sfdp", + "shasum": "/usr/local/bin/shasum", + "sim_client": "/usr/local/bin/sim_client", + "splain": "/usr/local/bin/splain", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "stl2gts": "/usr/local/bin/stl2gts", + "stream": "/usr/local/bin/stream", + "streamzip": "/usr/local/bin/streamzip", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tomlq": "/usr/local/bin/tomlq", + "tput": "/usr/local/bin/tput", + "transform": "/usr/local/bin/transform", + "tred": "/usr/local/bin/tred", + "tset": "/usr/local/bin/tset", + "twopi": "/usr/local/bin/twopi", + "unflatten": "/usr/local/bin/unflatten", + "unix-lpr.sh": "/usr/local/bin/unix-lpr.sh", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "vpxdec": "/usr/local/bin/vpxdec", + "vpxenc": "/usr/local/bin/vpxenc", + "wayland-scanner": "/usr/local/bin/wayland-scanner", + "webpinfo": "/usr/local/bin/webpinfo", + "webpmux": "/usr/local/bin/webpmux", + "webpng": "/usr/local/bin/webpng", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x264": "/usr/local/bin/x264", + "x265": "/usr/local/bin/x265", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-pkg-config": "/usr/local/bin/x86_64-conda-linux-gnu-pkg-config", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "xq": "/usr/local/bin/xq", + "xsubpp": "/usr/local/bin/xsubpp", + "yq": "/usr/local/bin/yq", + "zipdetails": "/usr/local/bin/zipdetails", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-bugphyzz:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-bugphyzz:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..2a8024e --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-bugphyzz:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,222 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "activate-global-python-argcomplete": "/usr/local/bin/activate-global-python-argcomplete", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "installBiocDataPackage.sh": "/usr/local/bin/installBiocDataPackage.sh", + "jpegtran": "/usr/local/bin/jpegtran", + "jq": "/usr/local/bin/jq", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "onig-config": "/usr/local/bin/onig-config", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python-argcomplete-check-easy-install-script": "/usr/local/bin/python-argcomplete-check-easy-install-script", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "register-python-argcomplete": "/usr/local/bin/register-python-argcomplete", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tomlq": "/usr/local/bin/tomlq", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xq": "/usr/local/bin/xq", + "yq": "/usr/local/bin/yq", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-dfplyr:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-dfplyr:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..d227c94 --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-dfplyr:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,200 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-ggseqalign:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-ggseqalign:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..2a8024e --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-ggseqalign:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,222 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "activate-global-python-argcomplete": "/usr/local/bin/activate-global-python-argcomplete", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "installBiocDataPackage.sh": "/usr/local/bin/installBiocDataPackage.sh", + "jpegtran": "/usr/local/bin/jpegtran", + "jq": "/usr/local/bin/jq", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "onig-config": "/usr/local/bin/onig-config", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python-argcomplete-check-easy-install-script": "/usr/local/bin/python-argcomplete-check-easy-install-script", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "register-python-argcomplete": "/usr/local/bin/register-python-argcomplete", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tomlq": "/usr/local/bin/tomlq", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xq": "/usr/local/bin/xq", + "yq": "/usr/local/bin/yq", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-gypsum:1.2.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-gypsum:1.2.0--r44hdfd78af_0.json new file mode 100644 index 0000000..a8e60de --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-gypsum:1.2.0--r44hdfd78af_0.json @@ -0,0 +1,223 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-immunogenviewer:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-immunogenviewer:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..2a8024e --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-immunogenviewer:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,222 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "activate-global-python-argcomplete": "/usr/local/bin/activate-global-python-argcomplete", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "installBiocDataPackage.sh": "/usr/local/bin/installBiocDataPackage.sh", + "jpegtran": "/usr/local/bin/jpegtran", + "jq": "/usr/local/bin/jq", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "onig-config": "/usr/local/bin/onig-config", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python-argcomplete-check-easy-install-script": "/usr/local/bin/python-argcomplete-check-easy-install-script", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "register-python-argcomplete": "/usr/local/bin/register-python-argcomplete", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tomlq": "/usr/local/bin/tomlq", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xq": "/usr/local/bin/xq", + "yq": "/usr/local/bin/yq", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-kmcut:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-kmcut:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..2a8024e --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-kmcut:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,222 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "activate-global-python-argcomplete": "/usr/local/bin/activate-global-python-argcomplete", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "installBiocDataPackage.sh": "/usr/local/bin/installBiocDataPackage.sh", + "jpegtran": "/usr/local/bin/jpegtran", + "jq": "/usr/local/bin/jq", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "onig-config": "/usr/local/bin/onig-config", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python-argcomplete-check-easy-install-script": "/usr/local/bin/python-argcomplete-check-easy-install-script", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "register-python-argcomplete": "/usr/local/bin/register-python-argcomplete", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tomlq": "/usr/local/bin/tomlq", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xq": "/usr/local/bin/xq", + "yq": "/usr/local/bin/yq", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-omxplore:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-omxplore:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..53da81e --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-omxplore:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,293 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "activate-global-python-argcomplete": "/usr/local/bin/activate-global-python-argcomplete", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "f2py": "/usr/local/bin/f2py", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gif2h5": "/usr/local/bin/gif2h5", + "gif2hdf": "/usr/local/bin/gif2hdf", + "glpsol": "/usr/local/bin/glpsol", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "h4_ncdump": "/usr/local/bin/h4_ncdump", + "h4_ncgen": "/usr/local/bin/h4_ncgen", + "h4cc": "/usr/local/bin/h4cc", + "h4redeploy": "/usr/local/bin/h4redeploy", + "h52gif": "/usr/local/bin/h52gif", + "h5c++": "/usr/local/bin/h5c++", + "h5cc": "/usr/local/bin/h5cc", + "h5clear": "/usr/local/bin/h5clear", + "h5copy": "/usr/local/bin/h5copy", + "h5debug": "/usr/local/bin/h5debug", + "h5delete": "/usr/local/bin/h5delete", + "h5diff": "/usr/local/bin/h5diff", + "h5dump": "/usr/local/bin/h5dump", + "h5fc": "/usr/local/bin/h5fc", + "h5format_convert": "/usr/local/bin/h5format_convert", + "h5fuse": "/usr/local/bin/h5fuse", + "h5import": "/usr/local/bin/h5import", + "h5jam": "/usr/local/bin/h5jam", + "h5ls": "/usr/local/bin/h5ls", + "h5mkgrp": "/usr/local/bin/h5mkgrp", + "h5perf_serial": "/usr/local/bin/h5perf_serial", + "h5redeploy": "/usr/local/bin/h5redeploy", + "h5repack": "/usr/local/bin/h5repack", + "h5repart": "/usr/local/bin/h5repart", + "h5stat": "/usr/local/bin/h5stat", + "h5unjam": "/usr/local/bin/h5unjam", + "h5watch": "/usr/local/bin/h5watch", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "hdf24to8": "/usr/local/bin/hdf24to8", + "hdf2gif": "/usr/local/bin/hdf2gif", + "hdf2jpeg": "/usr/local/bin/hdf2jpeg", + "hdf8to24": "/usr/local/bin/hdf8to24", + "hdfcomp": "/usr/local/bin/hdfcomp", + "hdfed": "/usr/local/bin/hdfed", + "hdfimport": "/usr/local/bin/hdfimport", + "hdfls": "/usr/local/bin/hdfls", + "hdfpack": "/usr/local/bin/hdfpack", + "hdftopal": "/usr/local/bin/hdftopal", + "hdftor8": "/usr/local/bin/hdftor8", + "hdfunpac": "/usr/local/bin/hdfunpac", + "hdiff": "/usr/local/bin/hdiff", + "hdp": "/usr/local/bin/hdp", + "hrepack": "/usr/local/bin/hrepack", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "installBiocDataPackage.sh": "/usr/local/bin/installBiocDataPackage.sh", + "jpeg2hdf": "/usr/local/bin/jpeg2hdf", + "jpegtran": "/usr/local/bin/jpegtran", + "jq": "/usr/local/bin/jq", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "lz4": "/usr/local/bin/lz4", + "lz4c": "/usr/local/bin/lz4c", + "lz4cat": "/usr/local/bin/lz4cat", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "nc-config": "/usr/local/bin/nc-config", + "nccopy": "/usr/local/bin/nccopy", + "ncdump": "/usr/local/bin/ncdump", + "ncgen": "/usr/local/bin/ncgen", + "ncgen3": "/usr/local/bin/ncgen3", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "numpy-config": "/usr/local/bin/numpy-config", + "onig-config": "/usr/local/bin/onig-config", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "paltohdf": "/usr/local/bin/paltohdf", + "pandoc": "/usr/local/bin/pandoc", + "pandoc-lua": "/usr/local/bin/pandoc-lua", + "pandoc-server": "/usr/local/bin/pandoc-server", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python-argcomplete-check-easy-install-script": "/usr/local/bin/python-argcomplete-check-easy-install-script", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "r8tohdf": "/usr/local/bin/r8tohdf", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "register-python-argcomplete": "/usr/local/bin/register-python-argcomplete", + "reset": "/usr/local/bin/reset", + "ristosds": "/usr/local/bin/ristosds", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tomlq": "/usr/local/bin/tomlq", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlz4": "/usr/local/bin/unlz4", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "vmake": "/usr/local/bin/vmake", + "vshow": "/usr/local/bin/vshow", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "xq": "/usr/local/bin/xq", + "yq": "/usr/local/bin/yq", + "zipcmp": "/usr/local/bin/zipcmp", + "zipmerge": "/usr/local/bin/zipmerge", + "ziptool": "/usr/local/bin/ziptool", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-pipets:1.2.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-pipets:1.2.0--r44hdfd78af_0.json new file mode 100644 index 0000000..2a8024e --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-pipets:1.2.0--r44hdfd78af_0.json @@ -0,0 +1,222 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "activate-global-python-argcomplete": "/usr/local/bin/activate-global-python-argcomplete", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "installBiocDataPackage.sh": "/usr/local/bin/installBiocDataPackage.sh", + "jpegtran": "/usr/local/bin/jpegtran", + "jq": "/usr/local/bin/jq", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "onig-config": "/usr/local/bin/onig-config", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python-argcomplete-check-easy-install-script": "/usr/local/bin/python-argcomplete-check-easy-install-script", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "register-python-argcomplete": "/usr/local/bin/register-python-argcomplete", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tomlq": "/usr/local/bin/tomlq", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xq": "/usr/local/bin/xq", + "yq": "/usr/local/bin/yq", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-rhinotyper:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-rhinotyper:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..2a8024e --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-rhinotyper:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,222 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "activate-global-python-argcomplete": "/usr/local/bin/activate-global-python-argcomplete", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "installBiocDataPackage.sh": "/usr/local/bin/installBiocDataPackage.sh", + "jpegtran": "/usr/local/bin/jpegtran", + "jq": "/usr/local/bin/jq", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "onig-config": "/usr/local/bin/onig-config", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python-argcomplete-check-easy-install-script": "/usr/local/bin/python-argcomplete-check-easy-install-script", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "register-python-argcomplete": "/usr/local/bin/register-python-argcomplete", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tomlq": "/usr/local/bin/tomlq", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xq": "/usr/local/bin/xq", + "yq": "/usr/local/bin/yq", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-scmitomut:1.2.0--r44he5774e6_0.json b/quay.io/biocontainers/b/bioconductor-scmitomut:1.2.0--r44he5774e6_0.json new file mode 100644 index 0000000..d227c94 --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-scmitomut:1.2.0--r44he5774e6_0.json @@ -0,0 +1,200 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-scmultisim:1.2.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-scmultisim:1.2.0--r44hdfd78af_0.json new file mode 100644 index 0000000..de14519 --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-scmultisim:1.2.0--r44hdfd78af_0.json @@ -0,0 +1,226 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "activate-global-python-argcomplete": "/usr/local/bin/activate-global-python-argcomplete", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "glpsol": "/usr/local/bin/glpsol", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "installBiocDataPackage.sh": "/usr/local/bin/installBiocDataPackage.sh", + "jpegtran": "/usr/local/bin/jpegtran", + "jq": "/usr/local/bin/jq", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "onig-config": "/usr/local/bin/onig-config", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python-argcomplete-check-easy-install-script": "/usr/local/bin/python-argcomplete-check-easy-install-script", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "register-python-argcomplete": "/usr/local/bin/register-python-argcomplete", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tomlq": "/usr/local/bin/tomlq", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "xq": "/usr/local/bin/xq", + "yq": "/usr/local/bin/yq", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-scoup:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-scoup:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..2a8024e --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-scoup:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,222 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "activate-global-python-argcomplete": "/usr/local/bin/activate-global-python-argcomplete", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "installBiocDataPackage.sh": "/usr/local/bin/installBiocDataPackage.sh", + "jpegtran": "/usr/local/bin/jpegtran", + "jq": "/usr/local/bin/jq", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "onig-config": "/usr/local/bin/onig-config", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python-argcomplete-check-easy-install-script": "/usr/local/bin/python-argcomplete-check-easy-install-script", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "register-python-argcomplete": "/usr/local/bin/register-python-argcomplete", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tomlq": "/usr/local/bin/tomlq", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xq": "/usr/local/bin/xq", + "yq": "/usr/local/bin/yq", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-seahtrue:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-seahtrue:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..a8e60de --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-seahtrue:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,223 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-sketchr:1.2.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-sketchr:1.2.0--r44hdfd78af_0.json new file mode 100644 index 0000000..d227c94 --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-sketchr:1.2.0--r44hdfd78af_0.json @@ -0,0 +1,200 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-spectraql:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-spectraql:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..d227c94 --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-spectraql:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,200 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-tidysbml:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-tidysbml:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..7ec934c --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-tidysbml:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,226 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-tidytof:1.0.0--r44he5774e6_0.json b/quay.io/biocontainers/b/bioconductor-tidytof:1.0.0--r44he5774e6_0.json new file mode 100644 index 0000000..edd7ebc --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-tidytof:1.0.0--r44he5774e6_0.json @@ -0,0 +1,204 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "glpsol": "/usr/local/bin/glpsol", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/biox:1.0.0--pyhdfd78af_0.json b/quay.io/biocontainers/b/biox:1.0.0--pyhdfd78af_0.json new file mode 100644 index 0000000..346dc0c --- /dev/null +++ b/quay.io/biocontainers/b/biox:1.0.0--pyhdfd78af_0.json @@ -0,0 +1,54 @@ +{ + "biox": "/usr/local/bin/biox", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "clear": "/usr/local/bin/clear", + "f2py": "/usr/local/bin/f2py", + "get_gprof": "/usr/local/bin/get_gprof", + "get_objgraph": "/usr/local/bin/get_objgraph", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "numpy-config": "/usr/local/bin/numpy-config", + "openssl": "/usr/local/bin/openssl", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "reset": "/usr/local/bin/reset", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tqdm": "/usr/local/bin/tqdm", + "tset": "/usr/local/bin/tset", + "undill": "/usr/local/bin/undill", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld" +} \ No newline at end of file diff --git a/quay.io/biocontainers/n/needletail:0.6.1--py310hc7d9715_0.json b/quay.io/biocontainers/n/needletail:0.6.1--py310hc7d9715_0.json new file mode 100644 index 0000000..7ae64ec --- /dev/null +++ b/quay.io/biocontainers/n/needletail:0.6.1--py310hc7d9715_0.json @@ -0,0 +1,50 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.10": "/usr/local/bin/2to3-3.10", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "clear": "/usr/local/bin/clear", + "idle3": "/usr/local/bin/idle3", + "idle3.10": "/usr/local/bin/idle3.10", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "openssl": "/usr/local/bin/openssl", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.10": "/usr/local/bin/pydoc3.10", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.10": "/usr/local/bin/python3.10", + "python3.10-config": "/usr/local/bin/python3.10-config", + "reset": "/usr/local/bin/reset", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld" +} \ No newline at end of file diff --git a/quay.io/biocontainers/n/novae:0.2.2--pyhdfd78af_0.json b/quay.io/biocontainers/n/novae:0.2.2--pyhdfd78af_0.json new file mode 100644 index 0000000..ed53a87 --- /dev/null +++ b/quay.io/biocontainers/n/novae:0.2.2--pyhdfd78af_0.json @@ -0,0 +1,344 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.12": "/usr/local/bin/2to3-3.12", + "JxrDecApp": "/usr/local/bin/JxrDecApp", + "JxrEncApp": "/usr/local/bin/JxrEncApp", + "SvtAv1EncApp": "/usr/local/bin/SvtAv1EncApp", + "acyclic": "/usr/local/bin/acyclic", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "annotate": "/usr/local/bin/annotate", + "aomdec": "/usr/local/bin/aomdec", + "aomenc": "/usr/local/bin/aomenc", + "ase": "/usr/local/bin/ase", + "ase-build": "/usr/local/bin/ase-build", + "ase-db": "/usr/local/bin/ase-db", + "ase-gui": "/usr/local/bin/ase-gui", + "ase-info": "/usr/local/bin/ase-info", + "ase-run": "/usr/local/bin/ase-run", + "bcomps": "/usr/local/bin/bcomps", + "bdftogd": "/usr/local/bin/bdftogd", + "brotli": "/usr/local/bin/brotli", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cbrunsli": "/usr/local/bin/cbrunsli", + "ccomps": "/usr/local/bin/ccomps", + "chardetect": "/usr/local/bin/chardetect", + "circo": "/usr/local/bin/circo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "cluster": "/usr/local/bin/cluster", + "compile_et": "/usr/local/bin/compile_et", + "convert-caffe2-to-onnx": "/usr/local/bin/convert-caffe2-to-onnx", + "convert-onnx-to-caffe2": "/usr/local/bin/convert-onnx-to-caffe2", + "csv2rdf": "/usr/local/bin/csv2rdf", + "curl-config": "/usr/local/bin/curl-config", + "dav1d": "/usr/local/bin/dav1d", + "dbrunsli": "/usr/local/bin/dbrunsli", + "delaunay": "/usr/local/bin/delaunay", + "derb": "/usr/local/bin/derb", + "diffimg": "/usr/local/bin/diffimg", + "dijkstra": "/usr/local/bin/dijkstra", + "djpeg": "/usr/local/bin/djpeg", + "dot": "/usr/local/bin/dot", + "dot2gxl": "/usr/local/bin/dot2gxl", + "dot_builtins": "/usr/local/bin/dot_builtins", + "edgepaint": "/usr/local/bin/edgepaint", + "f2py": "/usr/local/bin/f2py", + "fabric": "/usr/local/bin/fabric", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "fdp": "/usr/local/bin/fdp", + "flask": "/usr/local/bin/flask", + "fonttools": "/usr/local/bin/fonttools", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "gc": "/usr/local/bin/gc", + "gd2copypal": "/usr/local/bin/gd2copypal", + "gd2togif": "/usr/local/bin/gd2togif", + "gd2topng": "/usr/local/bin/gd2topng", + "gdcmpgif": "/usr/local/bin/gdcmpgif", + "gdk-pixbuf-csource": "/usr/local/bin/gdk-pixbuf-csource", + "gdk-pixbuf-pixdata": "/usr/local/bin/gdk-pixbuf-pixdata", + "gdk-pixbuf-query-loaders": "/usr/local/bin/gdk-pixbuf-query-loaders", + "gdk-pixbuf-thumbnailer": "/usr/local/bin/gdk-pixbuf-thumbnailer", + "gdparttopng": "/usr/local/bin/gdparttopng", + "gdtopng": "/usr/local/bin/gdtopng", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gif2h5": "/usr/local/bin/gif2h5", + "gif2rgb": "/usr/local/bin/gif2rgb", + "gifbuild": "/usr/local/bin/gifbuild", + "gifclrmp": "/usr/local/bin/gifclrmp", + "giffix": "/usr/local/bin/giffix", + "giftext": "/usr/local/bin/giftext", + "giftogd2": "/usr/local/bin/giftogd2", + "giftool": "/usr/local/bin/giftool", + "gml2gv": "/usr/local/bin/gml2gv", + "graphml2gv": "/usr/local/bin/graphml2gv", + "gss-client": "/usr/local/bin/gss-client", + "gtk-builder-convert": "/usr/local/bin/gtk-builder-convert", + "gtk-demo": "/usr/local/bin/gtk-demo", + "gtk-query-immodules-2.0": "/usr/local/bin/gtk-query-immodules-2.0", + "gts-config": "/usr/local/bin/gts-config", + "gts2dxf": "/usr/local/bin/gts2dxf", + "gts2oogl": "/usr/local/bin/gts2oogl", + "gts2stl": "/usr/local/bin/gts2stl", + "gtscheck": "/usr/local/bin/gtscheck", + "gtscompare": "/usr/local/bin/gtscompare", + "gtstemplate": "/usr/local/bin/gtstemplate", + "gv2gml": "/usr/local/bin/gv2gml", + "gv2gxl": "/usr/local/bin/gv2gxl", + "gvcolor": "/usr/local/bin/gvcolor", + "gvgen": "/usr/local/bin/gvgen", + "gvmap": "/usr/local/bin/gvmap", + "gvmap.sh": "/usr/local/bin/gvmap.sh", + "gvpack": "/usr/local/bin/gvpack", + "gvpr": "/usr/local/bin/gvpr", + "gxl2dot": "/usr/local/bin/gxl2dot", + "gxl2gv": "/usr/local/bin/gxl2gv", + "h52gif": "/usr/local/bin/h52gif", + "h5c++": "/usr/local/bin/h5c++", + "h5cc": "/usr/local/bin/h5cc", + "h5clear": "/usr/local/bin/h5clear", + "h5copy": "/usr/local/bin/h5copy", + "h5debug": "/usr/local/bin/h5debug", + "h5delete": "/usr/local/bin/h5delete", + "h5diff": "/usr/local/bin/h5diff", + "h5dump": "/usr/local/bin/h5dump", + "h5fc": "/usr/local/bin/h5fc", + "h5format_convert": "/usr/local/bin/h5format_convert", + "h5fuse": "/usr/local/bin/h5fuse", + "h5import": "/usr/local/bin/h5import", + "h5jam": "/usr/local/bin/h5jam", + "h5ls": "/usr/local/bin/h5ls", + "h5mkgrp": "/usr/local/bin/h5mkgrp", + "h5perf_serial": "/usr/local/bin/h5perf_serial", + "h5redeploy": "/usr/local/bin/h5redeploy", + "h5repack": "/usr/local/bin/h5repack", + "h5repart": "/usr/local/bin/h5repart", + "h5stat": "/usr/local/bin/h5stat", + "h5unjam": "/usr/local/bin/h5unjam", + "h5watch": "/usr/local/bin/h5watch", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "huggingface-cli": "/usr/local/bin/huggingface-cli", + "hwloc-annotate": "/usr/local/bin/hwloc-annotate", + "hwloc-bind": "/usr/local/bin/hwloc-bind", + "hwloc-calc": "/usr/local/bin/hwloc-calc", + "hwloc-compress-dir": "/usr/local/bin/hwloc-compress-dir", + "hwloc-diff": "/usr/local/bin/hwloc-diff", + "hwloc-distrib": "/usr/local/bin/hwloc-distrib", + "hwloc-gather-cpuid": "/usr/local/bin/hwloc-gather-cpuid", + "hwloc-gather-topology": "/usr/local/bin/hwloc-gather-topology", + "hwloc-info": "/usr/local/bin/hwloc-info", + "hwloc-ls": "/usr/local/bin/hwloc-ls", + "hwloc-patch": "/usr/local/bin/hwloc-patch", + "hwloc-ps": "/usr/local/bin/hwloc-ps", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.12": "/usr/local/bin/idle3.12", + "imagecodecs": "/usr/local/bin/imagecodecs", + "imageio_download_bin": "/usr/local/bin/imageio_download_bin", + "imageio_remove_bin": "/usr/local/bin/imageio_remove_bin", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "isympy": "/usr/local/bin/isympy", + "jpegtran": "/usr/local/bin/jpegtran", + "jpgicc": "/usr/local/bin/jpgicc", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "ldapadd": "/usr/local/bin/ldapadd", + "ldapcompare": "/usr/local/bin/ldapcompare", + "ldapdelete": "/usr/local/bin/ldapdelete", + "ldapexop": "/usr/local/bin/ldapexop", + "ldapmodify": "/usr/local/bin/ldapmodify", + "ldapmodrdn": "/usr/local/bin/ldapmodrdn", + "ldappasswd": "/usr/local/bin/ldappasswd", + "ldapsearch": "/usr/local/bin/ldapsearch", + "ldapurl": "/usr/local/bin/ldapurl", + "ldapvc": "/usr/local/bin/ldapvc", + "ldapwhoami": "/usr/local/bin/ldapwhoami", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "lightning": "/usr/local/bin/lightning", + "linkicc": "/usr/local/bin/linkicc", + "lsm2bin": "/usr/local/bin/lsm2bin", + "lstopo": "/usr/local/bin/lstopo", + "lstopo-no-graphics": "/usr/local/bin/lstopo-no-graphics", + "lz4": "/usr/local/bin/lz4", + "lz4c": "/usr/local/bin/lz4c", + "lz4cat": "/usr/local/bin/lz4cat", + "makeconv": "/usr/local/bin/makeconv", + "mm2gv": "/usr/local/bin/mm2gv", + "natsort": "/usr/local/bin/natsort", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "neato": "/usr/local/bin/neato", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "nop": "/usr/local/bin/nop", + "normalizer": "/usr/local/bin/normalizer", + "numba": "/usr/local/bin/numba", + "numpy-config": "/usr/local/bin/numpy-config", + "openssl": "/usr/local/bin/openssl", + "opj_compress": "/usr/local/bin/opj_compress", + "opj_decompress": "/usr/local/bin/opj_decompress", + "opj_dump": "/usr/local/bin/opj_dump", + "osage": "/usr/local/bin/osage", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "patchwork": "/usr/local/bin/patchwork", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pg_config": "/usr/local/bin/pg_config", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "pngtogd": "/usr/local/bin/pngtogd", + "pngtogd2": "/usr/local/bin/pngtogd2", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "protoc": "/usr/local/bin/protoc", + "protoc-28.2.0": "/usr/local/bin/protoc-28.2.0", + "prune": "/usr/local/bin/prune", + "psicc": "/usr/local/bin/psicc", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.12": "/usr/local/bin/pydoc3.12", + "pyftmerge": "/usr/local/bin/pyftmerge", + "pyftsubset": "/usr/local/bin/pyftsubset", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.12": "/usr/local/bin/python3.12", + "python3.12-config": "/usr/local/bin/python3.12-config", + "qconvex": "/usr/local/bin/qconvex", + "qdelaunay": "/usr/local/bin/qdelaunay", + "qhalf": "/usr/local/bin/qhalf", + "qhull": "/usr/local/bin/qhull", + "qvoronoi": "/usr/local/bin/qvoronoi", + "rav1e": "/usr/local/bin/rav1e", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rbox": "/usr/local/bin/rbox", + "rdf2dot": "/usr/local/bin/rdf2dot", + "rdfgraphisomorphism": "/usr/local/bin/rdfgraphisomorphism", + "rdfpipe": "/usr/local/bin/rdfpipe", + "rdfs2dot": "/usr/local/bin/rdfs2dot", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "rsvg-convert": "/usr/local/bin/rsvg-convert", + "scanpy": "/usr/local/bin/scanpy", + "sccmap": "/usr/local/bin/sccmap", + "sclient": "/usr/local/bin/sclient", + "sfdp": "/usr/local/bin/sfdp", + "sim_client": "/usr/local/bin/sim_client", + "skivi": "/usr/local/bin/skivi", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "stl2gts": "/usr/local/bin/stl2gts", + "tabs": "/usr/local/bin/tabs", + "tabulate": "/usr/local/bin/tabulate", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2fsspec": "/usr/local/bin/tiff2fsspec", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcomment": "/usr/local/bin/tiffcomment", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tifffile": "/usr/local/bin/tifffile", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tificc": "/usr/local/bin/tificc", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "torch_shm_manager": "/usr/local/bin/torch_shm_manager", + "torchfrtrace": "/usr/local/bin/torchfrtrace", + "torchrun": "/usr/local/bin/torchrun", + "tput": "/usr/local/bin/tput", + "tqdm": "/usr/local/bin/tqdm", + "transform": "/usr/local/bin/transform", + "transicc": "/usr/local/bin/transicc", + "tred": "/usr/local/bin/tred", + "trimesh": "/usr/local/bin/trimesh", + "tset": "/usr/local/bin/tset", + "ttx": "/usr/local/bin/ttx", + "twopi": "/usr/local/bin/twopi", + "unflatten": "/usr/local/bin/unflatten", + "unlz4": "/usr/local/bin/unlz4", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "webpng": "/usr/local/bin/webpng", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "zfp": "/usr/local/bin/zfp", + "zopfli": "/usr/local/bin/zopfli", + "zopflipng": "/usr/local/bin/zopflipng", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/p/pycoverm:0.6.2--py310h34483ff_0.json b/quay.io/biocontainers/p/pycoverm:0.6.2--py310h34483ff_0.json new file mode 100644 index 0000000..df73669 --- /dev/null +++ b/quay.io/biocontainers/p/pycoverm:0.6.2--py310h34483ff_0.json @@ -0,0 +1,52 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.10": "/usr/local/bin/2to3-3.10", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "clear": "/usr/local/bin/clear", + "f2py": "/usr/local/bin/f2py", + "idle3": "/usr/local/bin/idle3", + "idle3.10": "/usr/local/bin/idle3.10", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "numpy-config": "/usr/local/bin/numpy-config", + "openssl": "/usr/local/bin/openssl", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.10": "/usr/local/bin/pydoc3.10", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.10": "/usr/local/bin/python3.10", + "python3.10-config": "/usr/local/bin/python3.10-config", + "reset": "/usr/local/bin/reset", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld" +} \ No newline at end of file diff --git a/quay.io/biocontainers/t/tinker:8.11.3--h8d36177_0.json b/quay.io/biocontainers/t/tinker:8.11.3--h8d36177_0.json new file mode 100644 index 0000000..13d5211 --- /dev/null +++ b/quay.io/biocontainers/t/tinker:8.11.3--h8d36177_0.json @@ -0,0 +1,67 @@ +{ + "alchemy": "/usr/local/bin/alchemy", + "analyze": "/usr/local/bin/analyze", + "anneal": "/usr/local/bin/anneal", + "arcedit": "/usr/local/bin/arcedit", + "bar": "/usr/local/bin/bar", + "correlate": "/usr/local/bin/correlate", + "critical": "/usr/local/bin/critical", + "crystal": "/usr/local/bin/crystal", + "diffuse": "/usr/local/bin/diffuse", + "distgeom": "/usr/local/bin/distgeom", + "document": "/usr/local/bin/document", + "dynamic": "/usr/local/bin/dynamic", + "freefix": "/usr/local/bin/freefix", + "gda": "/usr/local/bin/gda", + "intedit": "/usr/local/bin/intedit", + "intxyz": "/usr/local/bin/intxyz", + "minimize": "/usr/local/bin/minimize", + "minirot": "/usr/local/bin/minirot", + "minrigid": "/usr/local/bin/minrigid", + "mol2xyz": "/usr/local/bin/mol2xyz", + "molxyz": "/usr/local/bin/molxyz", + "monte": "/usr/local/bin/monte", + "newton": "/usr/local/bin/newton", + "newtrot": "/usr/local/bin/newtrot", + "nucleic": "/usr/local/bin/nucleic", + "optimize": "/usr/local/bin/optimize", + "optirot": "/usr/local/bin/optirot", + "optrigid": "/usr/local/bin/optrigid", + "path": "/usr/local/bin/path", + "pdbxyz": "/usr/local/bin/pdbxyz", + "polarize": "/usr/local/bin/polarize", + "poledit": "/usr/local/bin/poledit", + "potential": "/usr/local/bin/potential", + "prmedit": "/usr/local/bin/prmedit", + "protein": "/usr/local/bin/protein", + "pss": "/usr/local/bin/pss", + "pssrigid": "/usr/local/bin/pssrigid", + "pssrot": "/usr/local/bin/pssrot", + "radial": "/usr/local/bin/radial", + "saddle": "/usr/local/bin/saddle", + "scan": "/usr/local/bin/scan", + "sniffer": "/usr/local/bin/sniffer", + "spacefill": "/usr/local/bin/spacefill", + "spectrum": "/usr/local/bin/spectrum", + "superpose": "/usr/local/bin/superpose", + "testgrad": "/usr/local/bin/testgrad", + "testhess": "/usr/local/bin/testhess", + "testpair": "/usr/local/bin/testpair", + "testpol": "/usr/local/bin/testpol", + "testrot": "/usr/local/bin/testrot", + "testsurf": "/usr/local/bin/testsurf", + "testvir": "/usr/local/bin/testvir", + "timer": "/usr/local/bin/timer", + "timerot": "/usr/local/bin/timerot", + "torsfit": "/usr/local/bin/torsfit", + "valence": "/usr/local/bin/valence", + "vibbig": "/usr/local/bin/vibbig", + "vibrate": "/usr/local/bin/vibrate", + "vibrot": "/usr/local/bin/vibrot", + "xtalfit": "/usr/local/bin/xtalfit", + "xtalmin": "/usr/local/bin/xtalmin", + "xyzedit": "/usr/local/bin/xyzedit", + "xyzint": "/usr/local/bin/xyzint", + "xyzmol2": "/usr/local/bin/xyzmol2", + "xyzpdb": "/usr/local/bin/xyzpdb" +} \ No newline at end of file diff --git a/quay.io/biocontainers/u/unicore:1.0.1--h7ef3eeb_0.json b/quay.io/biocontainers/u/unicore:1.0.1--h7ef3eeb_0.json new file mode 100644 index 0000000..5242c55 --- /dev/null +++ b/quay.io/biocontainers/u/unicore:1.0.1--h7ef3eeb_0.json @@ -0,0 +1,229 @@ +{ + "FastTree": "/usr/local/bin/FastTree", + "FastTreeMP": "/usr/local/bin/FastTreeMP", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "aria2c": "/usr/local/bin/aria2c", + "autopoint": "/usr/local/bin/autopoint", + "awk": "/usr/local/bin/awk", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "checksum-profile": "/usr/local/bin/checksum-profile", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "convert-caffe2-to-onnx": "/usr/local/bin/convert-caffe2-to-onnx", + "convert-onnx-to-caffe2": "/usr/local/bin/convert-onnx-to-caffe2", + "corelist": "/usr/local/bin/corelist", + "cpan": "/usr/local/bin/cpan", + "csv-import": "/usr/local/bin/csv-import", + "curl-config": "/usr/local/bin/curl-config", + "datasets-cli": "/usr/local/bin/datasets-cli", + "einsi": "/usr/local/bin/einsi", + "elasticurl": "/usr/local/bin/elasticurl", + "elasticurl_cpp": "/usr/local/bin/elasticurl_cpp", + "elastipubsub": "/usr/local/bin/elastipubsub", + "elastipubsub5": "/usr/local/bin/elastipubsub5", + "elastishadow": "/usr/local/bin/elastishadow", + "enc2xs": "/usr/local/bin/enc2xs", + "encguess": "/usr/local/bin/encguess", + "envsubst": "/usr/local/bin/envsubst", + "f2py": "/usr/local/bin/f2py", + "fasttree": "/usr/local/bin/fasttree", + "fftns": "/usr/local/bin/fftns", + "fftnsi": "/usr/local/bin/fftnsi", + "foldmason": "/usr/local/bin/foldmason", + "foldseek": "/usr/local/bin/foldseek", + "gawk": "/usr/local/bin/gawk", + "gawk-5.3.1": "/usr/local/bin/gawk-5.3.1", + "gawkbug": "/usr/local/bin/gawkbug", + "get_gprof": "/usr/local/bin/get_gprof", + "get_objgraph": "/usr/local/bin/get_objgraph", + "gettext": "/usr/local/bin/gettext", + "gettext.sh": "/usr/local/bin/gettext.sh", + "gettextize": "/usr/local/bin/gettextize", + "gflags_completions.sh": "/usr/local/bin/gflags_completions.sh", + "ginsi": "/usr/local/bin/ginsi", + "grpc_cpp_plugin": "/usr/local/bin/grpc_cpp_plugin", + "grpc_csharp_plugin": "/usr/local/bin/grpc_csharp_plugin", + "grpc_node_plugin": "/usr/local/bin/grpc_node_plugin", + "grpc_objective_c_plugin": "/usr/local/bin/grpc_objective_c_plugin", + "grpc_php_plugin": "/usr/local/bin/grpc_php_plugin", + "grpc_python_plugin": "/usr/local/bin/grpc_python_plugin", + "grpc_ruby_plugin": "/usr/local/bin/grpc_ruby_plugin", + "gss-client": "/usr/local/bin/gss-client", + "h2ph": "/usr/local/bin/h2ph", + "h2xs": "/usr/local/bin/h2xs", + "huggingface-cli": "/usr/local/bin/huggingface-cli", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "idn2": "/usr/local/bin/idn2", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "instmodsh": "/usr/local/bin/instmodsh", + "iqtree": "/usr/local/bin/iqtree", + "iqtree2": "/usr/local/bin/iqtree2", + "isympy": "/usr/local/bin/isympy", + "json_pp": "/usr/local/bin/json_pp", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libnetcfg": "/usr/local/bin/libnetcfg", + "linsi": "/usr/local/bin/linsi", + "lz4": "/usr/local/bin/lz4", + "lz4c": "/usr/local/bin/lz4c", + "lz4cat": "/usr/local/bin/lz4cat", + "mafft": "/usr/local/bin/mafft", + "mafft-distance": "/usr/local/bin/mafft-distance", + "mafft-einsi": "/usr/local/bin/mafft-einsi", + "mafft-fftns": "/usr/local/bin/mafft-fftns", + "mafft-fftnsi": "/usr/local/bin/mafft-fftnsi", + "mafft-ginsi": "/usr/local/bin/mafft-ginsi", + "mafft-homologs.rb": "/usr/local/bin/mafft-homologs.rb", + "mafft-linsi": "/usr/local/bin/mafft-linsi", + "mafft-nwns": "/usr/local/bin/mafft-nwns", + "mafft-nwnsi": "/usr/local/bin/mafft-nwnsi", + "mafft-profile": "/usr/local/bin/mafft-profile", + "mafft-qinsi": "/usr/local/bin/mafft-qinsi", + "mafft-sparsecore.rb": "/usr/local/bin/mafft-sparsecore.rb", + "mafft-xinsi": "/usr/local/bin/mafft-xinsi", + "mqtt5_app": "/usr/local/bin/mqtt5_app", + "mqtt5_canary": "/usr/local/bin/mqtt5_canary", + "mqtt5canary": "/usr/local/bin/mqtt5canary", + "msgattrib": "/usr/local/bin/msgattrib", + "msgcat": "/usr/local/bin/msgcat", + "msgcmp": "/usr/local/bin/msgcmp", + "msgcomm": "/usr/local/bin/msgcomm", + "msgconv": "/usr/local/bin/msgconv", + "msgen": "/usr/local/bin/msgen", + "msgexec": "/usr/local/bin/msgexec", + "msgfilter": "/usr/local/bin/msgfilter", + "msgfmt": "/usr/local/bin/msgfmt", + "msggrep": "/usr/local/bin/msggrep", + "msginit": "/usr/local/bin/msginit", + "msgmerge": "/usr/local/bin/msgmerge", + "msgunfmt": "/usr/local/bin/msgunfmt", + "msguniq": "/usr/local/bin/msguniq", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "ngettext": "/usr/local/bin/ngettext", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "normalizer": "/usr/local/bin/normalizer", + "numpy-config": "/usr/local/bin/numpy-config", + "nwns": "/usr/local/bin/nwns", + "nwnsi": "/usr/local/bin/nwnsi", + "openssl": "/usr/local/bin/openssl", + "orc-contents": "/usr/local/bin/orc-contents", + "orc-memory": "/usr/local/bin/orc-memory", + "orc-metadata": "/usr/local/bin/orc-metadata", + "orc-scan": "/usr/local/bin/orc-scan", + "orc-statistics": "/usr/local/bin/orc-statistics", + "perl": "/usr/local/bin/perl", + "perl5.32.1": "/usr/local/bin/perl5.32.1", + "perlbug": "/usr/local/bin/perlbug", + "perldoc": "/usr/local/bin/perldoc", + "perlivp": "/usr/local/bin/perlivp", + "perlthanks": "/usr/local/bin/perlthanks", + "piconv": "/usr/local/bin/piconv", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pl2pm": "/usr/local/bin/pl2pm", + "pod2html": "/usr/local/bin/pod2html", + "pod2man": "/usr/local/bin/pod2man", + "pod2text": "/usr/local/bin/pod2text", + "pod2usage": "/usr/local/bin/pod2usage", + "podchecker": "/usr/local/bin/podchecker", + "protoc": "/usr/local/bin/protoc", + "protoc-28.2.0": "/usr/local/bin/protoc-28.2.0", + "prove": "/usr/local/bin/prove", + "ptar": "/usr/local/bin/ptar", + "ptardiff": "/usr/local/bin/ptardiff", + "ptargrep": "/usr/local/bin/ptargrep", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "raxmlHPC": "/usr/local/bin/raxmlHPC", + "raxmlHPC-AVX2": "/usr/local/bin/raxmlHPC-AVX2", + "raxmlHPC-PTHREADS": "/usr/local/bin/raxmlHPC-PTHREADS", + "raxmlHPC-PTHREADS-AVX2": "/usr/local/bin/raxmlHPC-PTHREADS-AVX2", + "raxmlHPC-PTHREADS-SSE3": "/usr/local/bin/raxmlHPC-PTHREADS-SSE3", + "raxmlHPC-SSE3": "/usr/local/bin/raxmlHPC-SSE3", + "recode-sr-latin": "/usr/local/bin/recode-sr-latin", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "shasum": "/usr/local/bin/shasum", + "sim_client": "/usr/local/bin/sim_client", + "splain": "/usr/local/bin/splain", + "spm_decode": "/usr/local/bin/spm_decode", + "spm_encode": "/usr/local/bin/spm_encode", + "spm_export_vocab": "/usr/local/bin/spm_export_vocab", + "spm_normalize": "/usr/local/bin/spm_normalize", + "spm_train": "/usr/local/bin/spm_train", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "streamzip": "/usr/local/bin/streamzip", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "timezone-dump": "/usr/local/bin/timezone-dump", + "toe": "/usr/local/bin/toe", + "torch_shm_manager": "/usr/local/bin/torch_shm_manager", + "torchfrtrace": "/usr/local/bin/torchfrtrace", + "torchrun": "/usr/local/bin/torchrun", + "tput": "/usr/local/bin/tput", + "tqdm": "/usr/local/bin/tqdm", + "transformers-cli": "/usr/local/bin/transformers-cli", + "tset": "/usr/local/bin/tset", + "undill": "/usr/local/bin/undill", + "unicore": "/usr/local/bin/unicore", + "unlz4": "/usr/local/bin/unlz4", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wget": "/usr/local/bin/wget", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xgettext": "/usr/local/bin/xgettext", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "xsubpp": "/usr/local/bin/xsubpp", + "xxh128sum": "/usr/local/bin/xxh128sum", + "xxh32sum": "/usr/local/bin/xxh32sum", + "xxh64sum": "/usr/local/bin/xxh64sum", + "xxhsum": "/usr/local/bin/xxhsum", + "zipdetails": "/usr/local/bin/zipdetails", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/skips.json b/skips.json index 0001137..8830a06 100644 --- a/skips.json +++ b/skips.json @@ -122,12 +122,30 @@ "quay.io/biocontainers/bgt", "quay.io/biocontainers/bioconda-repodata-patches", "quay.io/biocontainers/bioconductor-ampliqueso", + "quay.io/biocontainers/bioconductor-brew3r.r", + "quay.io/biocontainers/bioconductor-clustall", "quay.io/biocontainers/bioconductor-compspot", "quay.io/biocontainers/bioconductor-data-packages", + "quay.io/biocontainers/bioconductor-dinor", + "quay.io/biocontainers/bioconductor-dominosignal", "quay.io/biocontainers/bioconductor-flowtype", + "quay.io/biocontainers/bioconductor-hdxmsqc", + "quay.io/biocontainers/bioconductor-hubmapr", + "quay.io/biocontainers/bioconductor-koinar", "quay.io/biocontainers/bioconductor-moonlightr", + "quay.io/biocontainers/bioconductor-motiftestr", + "quay.io/biocontainers/bioconductor-pedixplorer", + "quay.io/biocontainers/bioconductor-pepsettest", + "quay.io/biocontainers/bioconductor-pgxrpi", + "quay.io/biocontainers/bioconductor-pwalign", "quay.io/biocontainers/bioconductor-rchyoptimyx", + "quay.io/biocontainers/bioconductor-scrapper", + "quay.io/biocontainers/bioconductor-shiny.gosling", + "quay.io/biocontainers/bioconductor-spacemarkers", + "quay.io/biocontainers/bioconductor-survclust", + "quay.io/biocontainers/bioconductor-tidyflowcore", "quay.io/biocontainers/bioconductor-ttmap", + "quay.io/biocontainers/bioconductor-ucsc.utils", "quay.io/biocontainers/bioformats2raw", "quay.io/biocontainers/blat", "quay.io/biocontainers/blobtoolkit", @@ -232,6 +250,7 @@ "quay.io/biocontainers/r-bayesprism", "quay.io/biocontainers/r-cdseq", "quay.io/biocontainers/r-circrnafull", + "quay.io/biocontainers/r-deconcell", "quay.io/biocontainers/r-fateid", "quay.io/biocontainers/r-mixomics", "quay.io/biocontainers/r-momf", @@ -262,6 +281,7 @@ "quay.io/biocontainers/sparseassembler", "quay.io/biocontainers/spingo", "quay.io/biocontainers/strainest", + "quay.io/biocontainers/svseq2", "quay.io/biocontainers/tagore", "quay.io/biocontainers/tantan", "quay.io/biocontainers/thermorawparser",