RManualGeneration.yml

# This workflow will autogenerate a manual for usage of Rsirius
# For more information see: https://cran.r-project.org/web/packages/roxygen2/vignettes/roxygen2.html

name: RManualGeneration

on: [workflow_dispatch]

jobs:
  build:
    runs-on: ubuntu-latest
    timeout-minutes: 30
    strategy:
      fail-fast: false
      matrix:
        r-version: ["4.4.0"]
    steps:
    - uses: actions/checkout@v3
    - name: Set up R ${{ matrix.r-version }}
      uses: r-lib/actions/setup-r@v2
      with:
        r-version: ${{ matrix.r-version }}
    - name: Install libcurl4
      run: |
        sudo apt-get update -y
        sudo apt-get install -y libcurl4-openssl-dev
    - name: Install curl
      run: install.packages("curl")
      shell: Rscript {0}
    - name: Install httr2
      run: install.packages("httr2")
      shell: Rscript {0}
    - name: Install jsonlite
      run: install.packages("jsonlite")
      shell: Rscript {0}
    - name: Install base64enc
      run: install.packages("base64enc")
      shell: Rscript {0}
    - name: Install remotes
      run: install.packages("remotes")
      shell: Rscript {0}
    - name: Extract RoxygenNote version
      id: roxygen_version
      run: |
        version=$(grep "^RoxygenNote: " client-api_r/generated/DESCRIPTION | awk '{print $2}')
        echo "roxygen_note=$version" >> $GITHUB_OUTPUT
    - name: Install roxygen2
      run: remotes::install_version("roxygen2", version = "${{ steps.roxygen_version.outputs.roxygen_note }}")
      shell: Rscript {0}
    - name: Generate Rsirius Manual
      run: roxygen2::roxygenize("client-api_r/generated", roclets = NULL, load_code = NULL, clean = TRUE)
      shell: Rscript {0}
    - name: update files and push to remote
      uses: stefanzweifel/git-auto-commit-action@v4.15.2
      with:
        commit_message: Auto-Generated RSirius Manual