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FASTQ Files

FASTQ files contain raw sequencing information, including nucleotide sequences and quality scores, and serve as the initial input for a majority of analyses. However, the presence of artifacts, low-quality, or residual adapter sequences can significantly impact downstream processing. Preprocessing steps, including quality trimming, adapter, and artifact removal, may be necessary to ensure data quality and meeting requirements for subsequent analyses.

Key Preprocessing Steps

  1. polyG Artifacts Removal: Removal of reads containing polyG artifacts from Illumina sequencing data.