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smith-chem-wisc / MetaMorpheus Public

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rmillikin edited this page Apr 5, 2017 · 23 revisions

Quantification

Peptides

Proteins

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Toggle table of contents Pages 38

Home
Adding Custom Modifications
Ambiguity
Amino Acid Substitution Discovery
Averaging Task
Binary Decision Tree Metrics
Calibration Task
Contaminants
Crosslink Search Task
Docker Image
Enhanced Match Between Runs Output Explained
Example TOML Files for each Task
Experimental Design
G PTM D: Global Post translational Modification Discovery Task
Getting Started
Glossary of Terminology
How to perform match between runs (MBR) with spectrum similarity validation
Hybrid Search
Import Results Into Skyline
Match Between Runs
MetaMorpheus Task Parameters Defined
mzIdentML output
N Glyco Search Task
Non specific cleavage ("No Enzyme", "Non specific") searches
O Glyco Search Task
Protease Digestion
Protein Parsimony & Grouping (Protein Inference)
Pruned Databases
Quantification
Scoring
Search Task
Spectral Library Search Task
Speedy Semi and Non Specific Enzyme Search Tasks
Top Down Search Task
Try the beta release of MetaMorpheus for Windows
Using the Command Line
Vignette: Bottom up mouse
Vignette: Top down yeast

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